Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000820.1

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Reverse (-)

185324 .. 187173

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000820.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

atgagcacagagaatgatcggaaccgccaaaccgccgcaaccagcaacgccaccacaattccttacttacctgacaacgtcatcgaaaaaatcctgtccttccttccgatcaatctagcggcccaggcgaacaccgtctcgaagcaatgggcagccctgtggccttcgttcccagtaatcgatctcgacgaggccgatccgatcaattgcgaactctatatcgaacctggacgtttcctcagcttcttgcaccattcactcagacgatgcggggatcagaggctcttggacaagttgaggattcgagccgaccttcgatacgcctacgtgttggtaacagagtggattgattttgcaattgataggtgtgttaaagagttagatcttcgaaatttgggtgagaattgtgagttcctgatagctcatgccgttttaactctgaaatctttaaccagtctgaatttggagaatgtgagactttatgcaagttctgggcttaacggtccagtttgcctacccttattgaaaaccatgtccctcacagagttggaatttttcgacgatgaggaggactgggccatttgcgccgtccccagcttaatttcggggtgtcctagcatggagcaattgtctattaagaaatgtaagcttggctactctaccatggaccttgaaatttcaagttacagtctcaaatccgtggaaattatgcattgccattgtatgaatttggtggttaccgccaagaatctcgagtcttttacattctattcggattgcacctgtccttaccataagactatgtacttgtgggaatgtgataacttgaaacatgtggacatctcttgtttggggttgaaacggcttctactgcatacatgcctagaaactatggagaactcgttttacactccaaatctagaggcttttgagtttagcggatatctgaaggccaaggtccattttgtggatgctccatcaaagttattgaaggctacaatcagagtttgggagacctcatggcccattgaatattattctgctatgagagattttcttgaaagtttcaattgctccaaaaaagtgaagctacatattgaggatgctgagggtgtcataataccagaacatcggagaatggaatggtcttccccattacctagtattaagcagctgcagctatacttttatgctccattgggggacagagaatattgtttgagaccttcattgatttggctggcaccatctgctgagattctaccatttctagataataatgattatgattatgatgaggatgaggatgaggatgatgatgatgacgacgatgatgatgatgatgatgacaatgacgacgacgttgatgaccacaacgaagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

461

Amino Acids

53.06

Weight (kDa)

4.49

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1243
AccB7I	CCANNNNNTGG	1 cut(s)	967
AciI	CCGC	7 cut(s)	25, 33, 36, 119, 270, 741, 939
AclWI	GGATC	2 cut(s)	191, 282
AcsI	RAATTY	5 cut(s)	391, 460, 551, 675, 727
AcuI	CTGAAG	1 cut(s)	968
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	1 cut(s)	967
AflIII	ACRYGT	2 cut(s)	327, 832
AgsI	TTSAA	9 cut(s)	526, 674, 681, 829, 859, 991, 1031, 1061, 1069
AjnI	CCWGG	2 cut(s)	123, 226
AluBI	AGCT	7 cut(s)	243, 422, 597, 649, 1090, 1174, 1180
AluI	AGCT	7 cut(s)	243, 422, 597, 649, 1090, 1174, 1180
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	5 cut(s)	142, 469, 695, 1007, 1216
AlwI	GGATC	2 cut(s)	191, 282
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	6 cut(s)	120, 161, 192, 576, 951, 1022
ApeKI	GCWGC	4 cut(s)	152, 1171, 1174, 1177
ApoI	RAATTY	5 cut(s)	391, 460, 551, 675, 727
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	6 cut(s)	121, 503, 576, 667, 958, 1023
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	503, 667, 958
BanI	GGYRCC	1 cut(s)	1243
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	2 cut(s)	239, 1107
BbvI	GCAGC	4 cut(s)	164, 1161, 1183, 1189
BccI	CCATC	2 cut(s)	985, 1255
BceAI	ACGGC	3 cut(s)	413, 572, 878
BciT130I	CCWGG	2 cut(s)	125, 228
BcoDI	GTCTC	5 cut(s)	142, 469, 695, 1007, 1216
BfaI	CTAG	6 cut(s)	116, 615, 884, 920, 1161, 1271
BfmI	CTRYAG	1 cut(s)	1175
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	6 cut(s)	36, 120, 153, 1172, 1175, 1178
BlsI	GCNGC	6 cut(s)	37, 121, 154, 1173, 1176, 1179
Bme1390I	CCNGG	2 cut(s)	125, 228
Bme18I	GGWCC	3 cut(s)	503, 667, 958
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	6 cut(s)	121, 503, 576, 667, 958, 1023
BmiI	GGNNCC	2 cut(s)	23, 1245
BmrFI	CCNGG	2 cut(s)	125, 228
BmrI	ACTGGG	2 cut(s)	167, 583
BmsI	GCATC	3 cut(s)	257, 961, 1093
BmuI	ACTGGG	2 cut(s)	167, 583
BpiI	GAAGAC	1 cut(s)	1140
Bpu10I	CCTNAGC	2 cut(s)	239, 1107
Bpu14I	TTCGAA	1 cut(s)	388
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	328
BsaI	GGTCTC	2 cut(s)	1007, 1216
BsaJI	CCNNGG	4 cut(s)	123, 663, 699, 954
BsaXI	ACNNNNNCTCC	4 cut(s)	614, 644, 887, 917
Bsc4I	CCNNNNNNNGG	1 cut(s)	967
Bse1I	ACTGG	4 cut(s)	173, 453, 506, 578
Bse3DI	GCAATG	2 cut(s)	152, 712
BseBI	CCWGG	2 cut(s)	125, 228
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	123, 663, 699, 954
BseGI	GGATG	5 cut(s)	976, 1108, 1306, 1312, 1318
BseLI	CCNNNNNNNGG	1 cut(s)	967
BseMI	GCAATG	2 cut(s)	152, 712
BseMII	CTCAG	4 cut(s)	253, 274, 1098, 1245
BseNI	ACTGG	4 cut(s)	173, 453, 506, 578
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	4 cut(s)	164, 1161, 1183, 1189
BseYI	CCCAGC	1 cut(s)	593
BshFI	GGCC	6 cut(s)	122, 163, 194, 578, 953, 1024
BshNI	GGYRCC	1 cut(s)	1243
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	752
BslFI	GGGAC	3 cut(s)	520, 575, 1217
BslI	CCNNNNNNNGG	1 cut(s)	967
BsmAI	GTCTC	5 cut(s)	142, 469, 695, 1007, 1216
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	3 cut(s)	520, 575, 1217
BsnI	GGCC	6 cut(s)	122, 163, 194, 578, 953, 1024
Bso31I	GGTCTC	2 cut(s)	1007, 1216
BsoBI	CYCGRG	1 cut(s)	752
Bsp119I	TTCGAA	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	7 cut(s)	25, 33, 36, 119, 270, 741, 939
BspANI	GGCC	6 cut(s)	122, 163, 194, 578, 953, 1024
BspCNI	CTCAG	4 cut(s)	252, 273, 1099, 1246
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	23, 1245
BspMAI	CTGCAG	1 cut(s)	1179
BspPI	GGATC	2 cut(s)	191, 282
BspT104I	TTCGAA	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	1243
BspTNI	GGTCTC	2 cut(s)	1007, 1216
BsrDI	GCAATG	2 cut(s)	152, 712
BsrI	ACTGG	4 cut(s)	173, 453, 506, 578
BssECI	CCNNGG	4 cut(s)	123, 663, 699, 954
BssMI	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
BssT1I	CCWWGG	2 cut(s)	663, 954
Bst2UI	CCWGG	2 cut(s)	125, 228
Bst4CI	ACNGT	3 cut(s)	136, 503, 689
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstBAI	YACGTR	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	1242
BstDEI	CTNAG	4 cut(s)	239, 260, 1107, 1254
BstDSI	CCRYGG	2 cut(s)	663, 699
BstEII	GGTNACC	1 cut(s)	736
BstF5I	GGATG	5 cut(s)	976, 1108, 1306, 1312, 1318
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	7 cut(s)	19, 111, 184, 199, 204, 277, 385
BstMAI	GTCTC	5 cut(s)	142, 469, 695, 1007, 1216
BstMBI	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 584, 871, 1177, 1250
BstNI	CCWGG	2 cut(s)	125, 228
BstNSI	RCATGY	2 cut(s)	836, 882
BstPI	GGTNACC	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	123, 226
BstSFI	CTRYAG	1 cut(s)	1175
BstV1I	GCAGC	4 cut(s)	164, 1161, 1183, 1189
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	6 cut(s)	122, 163, 194, 578, 953, 1024
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	2 cut(s)	663, 699
BtsCI	GGATG	5 cut(s)	976, 1108, 1306, 1312, 1318
Cac8I	GCNNGC	1 cut(s)	1242
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	6 cut(s)	121, 503, 576, 667, 958, 1023
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	7 cut(s)	425, 532, 619, 664, 833, 879, 1020
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	4 cut(s)	239, 260, 1107, 1254
DpnI	GATC	7 cut(s)	18, 110, 183, 198, 203, 276, 384
DpnII	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
Eco130I	CCWWGG	2 cut(s)	663, 954
Eco31I	GGTCTC	2 cut(s)	1007, 1216
Eco32I	GATATC	1 cut(s)	944
Eco47I	GGWCC	3 cut(s)	503, 667, 958
Eco57I	CTGAAG	1 cut(s)	968
Eco88I	CYCGRG	1 cut(s)	752
Eco91I	GGTNACC	1 cut(s)	736
EcoO65I	GGTNACC	1 cut(s)	736
EcoRII	CCWGG	2 cut(s)	123, 226
EcoRV	GATATC	1 cut(s)	944
EcoT14I	CCWWGG	2 cut(s)	663, 954
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	2 cut(s)	663, 954
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	7 cut(s)	428, 535, 622, 667, 836, 882, 1023
FaqI	GGGAC	3 cut(s)	520, 575, 1217
FatI	CATG	7 cut(s)	424, 531, 618, 663, 832, 878, 1019
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	6 cut(s)	36, 120, 153, 1172, 1175, 1178
FokI	GGATG	5 cut(s)	983, 1115, 1313, 1319, 1325
Fsp4HI	GCNGC	6 cut(s)	36, 120, 153, 1172, 1175, 1178
FspBI	CTAG	6 cut(s)	116, 615, 884, 920, 1161, 1271
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	6 cut(s)	36, 120, 153, 1172, 1175, 1178
GsaI	CCCAGC	1 cut(s)	597
HaeIII	GGCC	6 cut(s)	122, 163, 194, 578, 953, 1024
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	7 cut(s)	428, 535, 622, 667, 836, 882, 1023
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	4 cut(s)	301, 748, 755, 1258
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188III	TCNNGA	7 cut(s)	139, 185, 415, 752, 920, 1058, 1271
Hpy8I	GTNNAC	1 cut(s)	838
Hpy99I	CGWCG	5 cut(s)	191, 563, 1331, 1361, 1364
HpyAV	CCTTC	7 cut(s)	109, 113, 174, 323, 943, 985, 1236
HpyCH4III	ACNGT	3 cut(s)	136, 503, 689
HpyCH4IV	ACGT	4 cut(s)	78, 232, 327, 1362
HpyCH4V	TGCA	7 cut(s)	250, 356, 485, 712, 780, 874, 1177
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 584, 871, 1177, 1250
HpyF3I	CTNAG	4 cut(s)	239, 260, 1107, 1254
HpySE526I	ACGT	4 cut(s)	78, 232, 327, 1362
Hsp92II	CATG	7 cut(s)	428, 535, 622, 667, 836, 882, 1023
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
LmnI	GCTCC	4 cut(s)	622, 979, 1079, 1198
Lsp1109I	GCAGC	4 cut(s)	164, 1161, 1183, 1189
LweI	GCATC	3 cut(s)	257, 961, 1093
MaeI	CTAG	6 cut(s)	116, 615, 884, 920, 1161, 1271
MaeII	ACGT	4 cut(s)	78, 232, 327, 1362
MaeIII	GTNAC	3 cut(s)	334, 683, 736
MalI	GATC	7 cut(s)	18, 110, 183, 198, 203, 276, 384
MboI	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
MboII	GAAGA	2 cut(s)	377, 1140
MfeI	CAATTG	4 cut(s)	205, 357, 626, 1069
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	1 cut(s)	528
Mph1103I	ATGCAT	1 cut(s)	714
MseI	TTAA	7 cut(s)	372, 434, 449, 498, 599, 636, 1167
MspA1I	CMGCKG	1 cut(s)	1174
MspR9I	CCNGG	2 cut(s)	125, 228
MunI	CAATTG	4 cut(s)	205, 357, 626, 1069
MvaI	CCWGG	2 cut(s)	125, 228
MwoI	GCNNNNNNNGC	5 cut(s)	125, 584, 871, 1177, 1250
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
NlaIII	CATG	7 cut(s)	428, 535, 622, 667, 836, 882, 1023
NlaIV	GGNNCC	2 cut(s)	23, 1245
NsiI	ATGCAT	1 cut(s)	714
NspI	RCATGY	2 cut(s)	836, 882
NspV	TTCGAA	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	752
PciI	ACATGT	1 cut(s)	832
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 192
PfeI	GAWTC	3 cut(s)	301, 748, 1258
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	967
PkrI	GCNGC	6 cut(s)	37, 121, 154, 1173, 1176, 1179
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
Ppu21I	YACGTR	1 cut(s)	328
PscI	ACATGT	1 cut(s)	832
Psp6I	CCWGG	2 cut(s)	123, 226
PspEI	GGTNACC	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	2 cut(s)	123, 226
PspN4I	GGNNCC	2 cut(s)	23, 1245
PspPI	GGNCC	6 cut(s)	121, 503, 576, 667, 958, 1023
PsrI	GAACNNNNNNTAC	2 cut(s)	890, 922
PstI	CTGCAG	1 cut(s)	1179
PsuI	RGATCY	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	1174
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
SaqAI	TTAA	7 cut(s)	372, 434, 449, 498, 599, 636, 1167
SatI	GCNGC	6 cut(s)	36, 120, 153, 1172, 1175, 1178
Sau3AI	GATC	7 cut(s)	16, 108, 181, 196, 201, 274, 382
Sau96I	GGNCC	6 cut(s)	121, 503, 576, 667, 958, 1023
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	125, 228
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	257, 961, 1093
SfcI	CTRYAG	1 cut(s)	1175
Sfr274I	CTCGAG	1 cut(s)	752
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	3 cut(s)	503, 667, 958
SlaI	CTCGAG	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SsiI	CCGC	7 cut(s)	25, 33, 36, 119, 270, 741, 939
SspI	AATATT	2 cut(s)	1034, 1214
SspMI	CTAG	6 cut(s)	116, 615, 884, 920, 1161, 1271
StyD4I	CCNGG	2 cut(s)	123, 226
StyI	CCWWGG	2 cut(s)	663, 954
TaaI	ACNGT	3 cut(s)	136, 503, 689
TaiI	ACGT	4 cut(s)	81, 235, 330, 1365
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	2 cut(s)	38, 122
TfiI	GAWTC	3 cut(s)	301, 748, 1258
Tru1I	TTAA	7 cut(s)	372, 434, 449, 498, 599, 636, 1167
Tru9I	TTAA	7 cut(s)	372, 434, 449, 498, 599, 636, 1167
TseI	GCWGC	4 cut(s)	152, 1171, 1174, 1177
TspDTI	ATGAA	2 cut(s)	740, 1218
TspGWI	ACGGA	1 cut(s)	688
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	967
VpaK11BI	GGWCC	3 cut(s)	503, 667, 958
XapI	RAATTY	5 cut(s)	391, 460, 551, 675, 727
XbaI	TCTAGA	2 cut(s)	919, 1270
XceI	RCATGY	2 cut(s)	836, 882
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	752
XspI	CTAG	6 cut(s)	116, 615, 884, 920, 1161, 1271
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.