Rh6CG080100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003459
Physical Location & Seq
Reverse (-)
8669073 .. 8669384
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG080100.1

Sequence Viewer

Length: 312 bp
ATGTCCCTCAAAGAGGTTGAATTCGATGACGAAATTGATCTTGAGATCTTAATTCATGGTTGCCCTCATCTCGAGCGCATATCATTAAATCTGTGTGATCTTGGCTACACGCCCCCGGATCTTCACATTTCGTGTTCGAGTCTTAAATCATTGGAAATTATGAACTGCCATTCGTTGGATTTTGCAGTTCAGTGTATCAATCTTGAGTCTTTTATGTTCGTTTCCGAGTGTACCTGTGCCCTCCATAATGCTTTGACCGTGTGGAAATGTGACAACCTGAAGCTTCTTTACTTGTTTAGTGTGGGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

103

Amino Acids

11.61

Weight (kDa)

4.57

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 2 - 96 2e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 2 cut(s) 13, 175
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
AlwI GGATC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 71
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BcnI CCSGG 1 cut(s) 116
BglII AGATCT 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 62, 224
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 175
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 13, 175
BseSI GKGCMC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 13, 175
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 37, 45, 97, 118
BspPI GGATC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 37, 45, 97, 118
Bst4CI ACNGT 1 cut(s) 259
BstENI CCTNNNNNAGG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 4 cut(s) 40, 48, 100, 121
BstMBI GATC 4 cut(s) 37, 45, 97, 118
BstSCI CCNGG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 45, 118
BstYI RGATCY 2 cut(s) 45, 118
BtsIMutI CAGTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 56
CviJI RGCY 2 cut(s) 105, 283
CviKI_1 RGCY 2 cut(s) 105, 283
CviQI GTAC 1 cut(s) 231
DpnI GATC 4 cut(s) 39, 47, 99, 120
DpnII GATC 4 cut(s) 37, 45, 97, 118
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 20
FaeI CATG 1 cut(s) 59
FaiI YATR 5 cut(s) 57, 80, 161, 215, 246
FatI CATG 1 cut(s) 55
GlaI GCGC 1 cut(s) 77
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 139, 206
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 3 cut(s) 41, 71, 203
Hpy8I GTNNAC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 185
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 4 cut(s) 37, 45, 97, 118
LpnPI CCDG 3 cut(s) 129, 247, 290
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 39, 47, 99, 120
MboI GATC 4 cut(s) 37, 45, 97, 118
MboII GAAGA 1 cut(s) 113
MflI RGATCY 2 cut(s) 45, 118
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 4 cut(s) 20, 33, 51, 156
MlyI GAGTC 2 cut(s) 148, 215
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 7, 17, 75, 251
MseI TTAA 3 cut(s) 50, 86, 144
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 116
NciI CCSGG 1 cut(s) 116
NdeII GATC 4 cut(s) 37, 45, 97, 118
NlaIII CATG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 175
PleI GAGTC 2 cut(s) 147, 214
PpsI GAGTC 2 cut(s) 147, 214
PsuI RGATCY 2 cut(s) 45, 118
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 50, 86, 144
Sau3AI GATC 4 cut(s) 37, 45, 97, 118
SchI GAGTC 2 cut(s) 148, 215
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 241
SetI ASST 4 cut(s) 18, 236, 279, 285
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 3 cut(s) 41, 71, 203
SmoI CTYRAG 3 cut(s) 41, 71, 203
Sse9I AATT 4 cut(s) 20, 33, 51, 156
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 3 cut(s) 24, 72, 137
TasI AATT 4 cut(s) 20, 33, 51, 156
Tru1I TTAA 3 cut(s) 50, 86, 144
Tru9I TTAA 3 cut(s) 50, 86, 144
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 44, 176
TspRI CASTG 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 175
XagI CCTNNNNNAGG 1 cut(s) 11
XapI RAATTY 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.