Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

4950942 .. 4951934

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTATTTGTGGGAATGTGATAGCTTGAAACATGTGGACATCTCTTGCAAGGGTTTGAGACAGCTTCTATTGCACAATTGCCTAGAAACTATGGAGAACTCTTTAAACACTCCCAGTCTGGAGATTTTTGAGTTTAGTGGTTATCTGAAGGCCCAGATCCATTTTGTGGAGGCTCCATCAAATTTAATAAACTCTATAATCAGAGTATGGGAGACCATATGGCCCATTGAATATTATTCTGCTATGAGAGATTTTCTTGAAAGTTTCGATTACTCCAGAAAAGTGAAGATACATATTGAAGAGGCTGAGGGTGTCATAATACCAGAACATTGCAGAATGGAATGGTCTCCCCCATTACCTAGTATTAGGCAGCTGCAGCTGTACTTTTCGGCTCCATTGGGGGACACAGAATATTGTTTGAGACCCTCATTGCTTTGGATGGCACCATCTGCAGAGGTTCTACCTTTTCTACATAATGATGACGACAGTGATGATTATGAAGATATGGTCGACCGCAATAACAATGATCACAATGATTATGAGGACGATGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

186

Amino Acids

21.78

Weight (kDa)

4.37

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	28, 230, 260, 299
AluBI	AGCT	4 cut(s)	24, 64, 373, 379
AluI	AGCT	4 cut(s)	24, 64, 373, 379
Alw26I	GTCTC	4 cut(s)	52, 206, 351, 415
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	150, 221
ApeKI	GCWGC	3 cut(s)	370, 373, 376
ApoI	RAATTY	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	151, 222
BanI	GGYRCC	1 cut(s)	442
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	360, 382, 388
BccI	CCATC	3 cut(s)	184, 433, 454
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	4 cut(s)	52, 206, 351, 415
BfaI	CTAG	2 cut(s)	83, 360
BfmI	CTRYAG	2 cut(s)	374, 450
BisI	GCNGC	3 cut(s)	371, 374, 377
BlsI	GCNGC	3 cut(s)	372, 375, 378
BmgT120I	GGNCC	2 cut(s)	151, 222
BmiI	GGNNCC	3 cut(s)	174, 393, 444
BmrI	ACTGGG	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	2 cut(s)	140, 259
Bpu10I	CCTNAGC	1 cut(s)	306
BsaI	GGTCTC	3 cut(s)	206, 351, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	2 cut(s)	328, 428
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	2 cut(s)	328, 428
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	360, 382, 388
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	2 cut(s)	152, 223
BshNI	GGYRCC	1 cut(s)	442
BsiEI	CGRYCG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	4 cut(s)	52, 206, 351, 415
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	152, 223
Bso31I	GGTCTC	3 cut(s)	206, 351, 415
Bsp143I	GATC	2 cut(s)	156, 526
BspACI	CCGC	1 cut(s)	514
BspANI	GGCC	2 cut(s)	152, 223
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	174, 393, 444
BspMAI	CTGCAG	2 cut(s)	378, 454
BspPI	GGATC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	442
BspTNI	GGTCTC	3 cut(s)	206, 351, 415
BsrDI	GCAATG	2 cut(s)	328, 428
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	156, 526
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	159, 529
BstMAI	GTCTC	4 cut(s)	52, 206, 351, 415
BstMBI	GATC	2 cut(s)	156, 526
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 376, 449
BstNSI	RCATGY	1 cut(s)	35
BstSFI	CTRYAG	2 cut(s)	374, 450
BstV1I	GCAGC	3 cut(s)	360, 382, 388
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	152, 223
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	151, 222
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	24, 64, 152, 173, 223, 305, 373, 379, 392
CviKI_1	RGCY	9 cut(s)	24, 64, 152, 173, 223, 305, 373, 379, 392
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	158, 528
DpnII	GATC	2 cut(s)	156, 526
DraI	TTTAAA	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	3 cut(s)	206, 351, 415
Eco57I	CTGAAG	1 cut(s)	167
FaeI	CATG	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	371, 374, 377
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	3 cut(s)	371, 374, 377
FspBI	CTAG	2 cut(s)	83, 360
GluI	GCNGC	3 cut(s)	371, 374, 377
GsuI	CTGGAG	2 cut(s)	140, 259
HaeIII	GGCC	2 cut(s)	152, 223
Hin1II	CATG	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	37, 511
Hpy188I	TCNGA	2 cut(s)	147, 203
Hpy188III	TCNNGA	3 cut(s)	119, 257, 276
Hpy8I	GTNNAC	2 cut(s)	37, 511
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	5 cut(s)	48, 73, 333, 376, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 376, 449
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	156, 526
LmnI	GCTCC	2 cut(s)	178, 397
LpnPI	CCDG	5 cut(s)	104, 127, 167, 289, 336
Lsp1109I	GCAGC	3 cut(s)	360, 382, 388
MaeI	CTAG	2 cut(s)	83, 360
MalI	GATC	2 cut(s)	158, 528
MboI	GATC	2 cut(s)	156, 526
MboII	GAAGA	3 cut(s)	298, 311, 512
MfeI	CAATTG	1 cut(s)	76
MflI	RGATCY	1 cut(s)	156
MluCI	AATT	2 cut(s)	76, 181
MnlI	CCTC	6 cut(s)	163, 295, 301, 436, 448, 535
MseI	TTAA	2 cut(s)	104, 185
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	2 cut(s)	373, 379
MunI	CAATTG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	70, 376, 449
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	2 cut(s)	156, 526
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	3 cut(s)	174, 393, 444
NspI	RCATGY	1 cut(s)	35
PciI	ACATGT	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	372, 375, 378
PscI	ACATGT	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	174, 393, 444
PspPI	GGNCC	2 cut(s)	151, 222
PstI	CTGCAG	2 cut(s)	378, 454
PsuI	RGATCY	1 cut(s)	156
PvuII	CAGCTG	2 cut(s)	373, 379
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	477
SalI	GTCGAC	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	104, 185
SatI	GCNGC	3 cut(s)	371, 374, 377
Sau3AI	GATC	2 cut(s)	156, 526
Sau96I	GGNCC	2 cut(s)	151, 222
SetI	ASST	7 cut(s)	26, 66, 361, 375, 381, 459, 466
SfcI	CTRYAG	2 cut(s)	374, 450
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	2 cut(s)	76, 181
SsiI	CCGC	1 cut(s)	514
SspI	AATATT	2 cut(s)	233, 413
SspMI	CTAG	2 cut(s)	83, 360
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	267, 510
TasI	AATT	2 cut(s)	76, 181
TatI	WGTACW	1 cut(s)	381
Tru1I	TTAA	2 cut(s)	104, 185
Tru9I	TTAA	2 cut(s)	104, 185
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	3 cut(s)	370, 373, 376
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	493
Van91I	CCANNNNNTGG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	2 cut(s)	83, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.