Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

12432617 .. 12433917

Gene Structure 1301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGATCTCCCCCAAAAGCAGACAACTCAAAACCCTAAACAACATAGAAAATGATCAGAACCTCCAATCCGGCACCGCCGCCGCCAACTCCACCACAACTCCTTTCTTACCTGACAACGTTATCGAACAAATCCTCTCCTTCCTTCCGATCAAACTCGTGACGCAGGCAACCACCGTTTCGAAGCGGTGGGCTGACTTGTGGCCTTCCTTGCCTATAATTGATTTCGATGAGGGCGATCCCACCAATCCAGACGACCCAGCCAAACATCAACGCTTCATCAGATTCTTAAGGAACTGTTTGGAACGCTGCGAGAAACAGACGCTCGTAGATAAGTTCAGGCTTCGAATGAGATACCATGGAGTTGGAGAGGACGAAGACATTGTAGACGATTGGATAGTTTTCGCAATCCTGACATGTGTAAAAGAGTTTGATCTCTGTTTAGTTCGAGGCGGCGAATTCAGAGATGTGTGGACAACTGATCTCAACGAAGACGTTGATAGACTCTACCTCATACCGCAACGAATTTTCTCTTCAAACTGTTTAACTAGTCTCAAGTTGGAGAATGTGAGCTATTTCAGTCGTGCAACTGGTACTCCTATAAGCCTACCGTCATTGAAAACCATGTCCCTCAAGCATGTGGAGTGCGATGAGAAGGATGGTGACCACCGCGCCCTCCCTAGGTTAATTTCGGGGTGCCCTAGCCTCGAACACTTATCATTAAATCAGTGCAATTTTGGCTTATCCACCCTATCGCTTAAAATTTCTAGTTTCAGTCTCAAATCCTTGGAAATTATGGATTGCCATTCTTTGGATTTAGTAGTTGAGACTATCAATCTTGTATCTTTTAAATTGGTTTCAGAGTACTCCTACCCCTACCATTACGACTTGACTTTAATGAATTGCGACAAGTTGAAACATCTCCGCATCTCTAGTGTGGGGTTGAAAAAACTTTCATTGCTCTCTTGCTGTTGCAGAATGGAGAACTCCATTTTCACTCCAAATCTAGTTTCTGTTCTGTTTAGCGGTCGTGTGAAGGCGAAGGTTCATTTCGTTGAAGCTCCATCAAATTTATTAGATGCTAAAATTGGCGTTTGTTTCGAGAAACGTCAGTCGACCTTTAATTATTATTCTGATCTGAAAGCTTTTCTTGAAAGCTTCAATTGCGCCAGGGAAGTAGAGATATCTATTCGTGATGTTGAGCCTGCTGTTTCTTACATTGCACCAAGTTGTGCCAATAGCCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

415

Amino Acids

47.05

Weight (kDa)

5.91

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	111 - 287	1e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	164 - 323	1.4e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 693
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccI	GTMKAC	2 cut(s)	384, 1112
AccII	CGCG	1 cut(s)	669
AciI	CCGC	9 cut(s)	75, 78, 81, 184, 450, 515, 667, 922, 1023
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	4 cut(s)	455, 522, 759, 1066
AfaI	GTAC	2 cut(s)	592, 863
AfiI	CCNNNNNNNGG	2 cut(s)	678, 808
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	7 cut(s)	534, 616, 913, 943, 1055, 1151, 1159
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	991, 1023
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	4 cut(s)	570, 1058, 1142, 1155
AluI	AGCT	4 cut(s)	570, 1058, 1142, 1155
Alw26I	GTCTC	3 cut(s)	554, 779, 818
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	4 cut(s)	455, 522, 759, 1066
AspA2I	CCTAGG	1 cut(s)	677
AspLEI	GCGC	2 cut(s)	671, 1166
AsuHPI	GGTGA	1 cut(s)	671
AsuII	TTCGAA	2 cut(s)	179, 343
AvrII	CCTAGG	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	71, 693
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	381, 495
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	650, 1069
BciT130I	CCWGG	1 cut(s)	1168
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	3 cut(s)	554, 779, 818
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	6 cut(s)	546, 678, 699, 765, 930, 1004
BfrI	CTTAAG	1 cut(s)	286
BisI	GCNGC	4 cut(s)	78, 81, 307, 451
BlnI	CCTAGG	1 cut(s)	677
BlsI	GCNGC	4 cut(s)	79, 82, 308, 452
BmcAI	AGTACT	1 cut(s)	863
Bme1390I	CCNGG	1 cut(s)	1168
BmiI	GGNNCC	2 cut(s)	73, 695
BmrFI	CCNGG	1 cut(s)	1168
BmsI	GCATC	2 cut(s)	933, 1066
BpiI	GAAGAC	2 cut(s)	381, 495
Bpu14I	TTCGAA	2 cut(s)	179, 343
BpuEI	CTTGAG	2 cut(s)	536, 614
BsaJI	CCNNGG	4 cut(s)	355, 677, 783, 1167
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 808
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	2 cut(s)	953, 1215
BseBI	CCWGG	1 cut(s)	1168
BseDI	CCNNGG	4 cut(s)	355, 677, 783, 1167
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	2 cut(s)	678, 808
BseMI	GCAATG	2 cut(s)	953, 1215
BseNI	ACTGG	1 cut(s)	592
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	1027
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	71, 693
BsiEI	CGRYCG	1 cut(s)	1027
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	678, 808
BsmAI	GTCTC	3 cut(s)	554, 779, 818
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	202
Bsp119I	TTCGAA	2 cut(s)	179, 343
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp143I	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	9 cut(s)	75, 78, 81, 184, 450, 515, 667, 922, 1023
BspANI	GGCC	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	73, 695
BspPI	GGATC	1 cut(s)	230
BspT104I	TTCGAA	2 cut(s)	179, 343
BspT107I	GGYRCC	2 cut(s)	71, 693
BspTI	CTTAAG	1 cut(s)	286
BsrDI	GCAATG	2 cut(s)	953, 1215
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	4 cut(s)	355, 677, 783, 1167
BssMI	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	3 cut(s)	355, 677, 783
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	1168
Bst4CI	ACNGT	4 cut(s)	175, 296, 539, 609
Bst6I	CTCTTC	1 cut(s)	535
BstAFI	CTTAAG	1 cut(s)	286
BstBI	TTCGAA	2 cut(s)	179, 343
BstC8I	GCNNGC	2 cut(s)	165, 1203
BstDSI	CCRYGG	1 cut(s)	355
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	2 cut(s)	671, 1166
BstKTI	GATC	7 cut(s)	6, 55, 150, 238, 433, 481, 1135
BstMAI	GTCTC	3 cut(s)	554, 779, 818
BstMBI	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
BstMCI	CGRYCG	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 735, 1161
BstNI	CCWGG	1 cut(s)	1168
BstNSI	RCATGY	2 cut(s)	417, 638
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	1166
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	2 cut(s)	381, 495
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	731
Cac8I	GCNNGC	2 cut(s)	165, 1203
CfoI	GCGC	2 cut(s)	671, 1166
CseI	GACGC	2 cut(s)	169, 328
Csp6I	GTAC	2 cut(s)	591, 862
CviAII	CATG	4 cut(s)	356, 414, 622, 635
CviQI	GTAC	2 cut(s)	591, 862
DpnI	GATC	7 cut(s)	5, 54, 149, 237, 432, 480, 1134
DpnII	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
DraI	TTTAAA	1 cut(s)	847
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Eco130I	CCWWGG	3 cut(s)	355, 677, 783
Eco32I	GATATC	1 cut(s)	1182
Eco91I	GGTNACC	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	1166
EcoRV	GATATC	1 cut(s)	1182
EcoT14I	CCWWGG	3 cut(s)	355, 677, 783
ErhI	CCWWGG	3 cut(s)	355, 677, 783
FaeI	CATG	4 cut(s)	359, 417, 625, 638
FaiI	YATR	9 cut(s)	44, 215, 357, 415, 512, 599, 623, 636, 794
FalI	AAGNNNNNCTT	2 cut(s)	1131, 1163
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	4 cut(s)	355, 413, 621, 634
FbaI	TGATCA	1 cut(s)	52
FblI	GTMKAC	2 cut(s)	384, 1112
Fnu4HI	GCNGC	4 cut(s)	78, 81, 307, 451
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	4 cut(s)	78, 81, 307, 451
FspBI	CTAG	6 cut(s)	546, 678, 699, 765, 930, 1004
GlaI	GCGC	2 cut(s)	670, 1165
GluI	GCNGC	4 cut(s)	78, 81, 307, 451
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	169, 328
HhaI	GCGC	2 cut(s)	671, 1166
Hin1II	CATG	4 cut(s)	359, 417, 625, 638
Hin6I	GCGC	2 cut(s)	669, 1164
HinP1I	GCGC	2 cut(s)	669, 1164
HincII	GTYRAC	1 cut(s)	1113
HindII	GTYRAC	1 cut(s)	1113
HindIII	AAGCTT	2 cut(s)	1140, 1153
HinfI	GANTC	2 cut(s)	282, 501
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	3 cut(s)	385, 471, 1113
Hpy188I	TCNGA	7 cut(s)	57, 147, 281, 461, 859, 1132, 1137
Hpy188III	TCNNGA	6 cut(s)	157, 248, 409, 1099, 1148, 1190
Hpy8I	GTNNAC	3 cut(s)	385, 471, 1113
HpyAV	CCTTC	6 cut(s)	148, 152, 213, 646, 1027, 1033
HpyCH4III	ACNGT	4 cut(s)	175, 296, 539, 609
HpyCH4IV	ACGT	3 cut(s)	117, 492, 1105
HpyCH4V	TGCA	4 cut(s)	584, 729, 972, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 735, 1161
HpySE526I	ACGT	3 cut(s)	117, 492, 1105
Hsp92II	CATG	4 cut(s)	359, 417, 625, 638
HspAI	GCGC	2 cut(s)	669, 1164
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
LmnI	GCTCC	1 cut(s)	1063
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	933, 1066
MaeI	CTAG	6 cut(s)	546, 678, 699, 765, 930, 1004
MaeII	ACGT	3 cut(s)	117, 492, 1105
MaeIII	GTNAC	2 cut(s)	157, 659
MalI	GATC	7 cut(s)	5, 54, 149, 237, 432, 480, 1134
MboI	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
MboII	GAAGA	3 cut(s)	386, 500, 522
MfeI	CAATTG	1 cut(s)	1159
MhlI	GDGCHC	1 cut(s)	698
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	343, 537
MnlI	CCTC	9 cut(s)	71, 143, 223, 361, 440, 518, 638, 683, 713
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	1168
MunI	CAATTG	1 cut(s)	1159
MvaI	CCWGG	1 cut(s)	1168
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	3 cut(s)	208, 735, 1161
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
NlaIII	CATG	4 cut(s)	359, 417, 625, 638
NlaIV	GGNNCC	2 cut(s)	73, 695
NmuCI	GTSAC	2 cut(s)	157, 659
NspI	RCATGY	2 cut(s)	417, 638
NspV	TTCGAA	2 cut(s)	179, 343
PacI	TTAATTAA	1 cut(s)	1246
PciI	ACATGT	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	808
PkrI	GCNGC	4 cut(s)	79, 82, 308, 452
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PscI	ACATGT	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	1166
PspEI	GGTNACC	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	1166
PspN4I	GGNNCC	2 cut(s)	73, 695
RsaI	GTAC	2 cut(s)	592, 863
RsaNI	GTAC	2 cut(s)	591, 862
SalI	GTCGAC	1 cut(s)	1111
SatI	GCNGC	4 cut(s)	78, 81, 307, 451
Sau3AI	GATC	7 cut(s)	3, 52, 147, 235, 430, 478, 1132
ScaI	AGTACT	1 cut(s)	863
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	1168
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	2 cut(s)	933, 1066
SfuI	TTCGAA	2 cut(s)	179, 343
SmlI	CTYRAG	3 cut(s)	286, 551, 629
SmoI	CTYRAG	3 cut(s)	286, 551, 629
SpeI	ACTAGT	1 cut(s)	545
SsiI	CCGC	9 cut(s)	75, 78, 81, 184, 450, 515, 667, 922, 1023
SspMI	CTAG	6 cut(s)	546, 678, 699, 765, 930, 1004
StyD4I	CCNGG	1 cut(s)	1166
StyI	CCWWGG	3 cut(s)	355, 677, 783
TaaI	ACNGT	4 cut(s)	175, 296, 539, 609
TaiI	ACGT	3 cut(s)	120, 495, 1108
TaqI	TCGA	8 cut(s)	123, 179, 225, 343, 445, 705, 1098, 1112
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	3 cut(s)	80, 83, 453
TfiI	GAWTC	1 cut(s)	282
TscAI	CASTG	1 cut(s)	731
TseFI	GTSAC	2 cut(s)	157, 659
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	2 cut(s)	157, 659
TspDTI	ATGAA	4 cut(s)	265, 911, 942, 1034
TspRI	CASTG	1 cut(s)	731
Van91I	CCANNNNNTGG	1 cut(s)	808
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	4 cut(s)	455, 522, 759, 1066
XceI	RCATGY	2 cut(s)	417, 638
XmaJI	CCTAGG	1 cut(s)	677
XmiI	GTMKAC	2 cut(s)	384, 1112
XspI	CTAG	6 cut(s)	546, 678, 699, 765, 930, 1004
ZrmI	AGTACT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.