RchiOBHm_Chr6g0257151

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003459
Physical Location & Seq
Forward (+)
12412324 .. 12413335
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23065

Sequence Viewer

Length: 384 bp
ATGGAGAACGCAATTTTCACTCCAAATCTGGAGTATATTCTGTTTAGTGGTGTTGCGGAGGCCAAGGTCCATTTTGTGGAATCTCCACCGAGGTTGTTAGAGGCTACAGTCAGAATTACGAATTATGGGTGGACCTTTGAATGTTATTCGTTTCTGAGAGATTGTCTTGAAAGTTTCGATTGCTCCAGAAAAGTGGAGATAGATATTCGTGATGCTGAGGGTCTCATAATACCAGAACATTGCAGAAGGGAAGGGTCTCCACCATTACCTAGTGTCAAGCAGCTGCAGCTAACCTTTGCTGTTCCGTTAGGGGACAGAGATTATTGGTTGGATCCTTCCTTGGCTTGGATAGCACCATCTGCAGAGATTATTTGTTGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

127

Amino Acids

14.49

Weight (kDa)

4.65

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AciI CCGC 1 cut(s) 56
AclWI GGATC 2 cut(s) 326, 339
AfiI CCNNNNNNNGG 2 cut(s) 76, 345
AgsI TTSAA 2 cut(s) 140, 170
AluBI AGCT 2 cut(s) 283, 289
AluI AGCT 2 cut(s) 283, 289
Alw26I GTCTC 2 cut(s) 227, 261
AlwI GGATC 2 cut(s) 326, 339
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 280, 283, 286
AspS9I GGNCC 2 cut(s) 67, 132
AvaII GGWCC 2 cut(s) 67, 132
BamHI GGATCC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 270, 292, 298
BccI CCATC 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 227, 261
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 3 cut(s) 105, 284, 360
BisI GCNGC 3 cut(s) 281, 284, 287
BlsI GCNGC 3 cut(s) 282, 285, 288
Bme18I GGWCC 2 cut(s) 67, 132
BmgT120I GGNCC 2 cut(s) 67, 132
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 1 cut(s) 202
BpmI CTGGAG 2 cut(s) 50, 169
Bpu10I CCTNAGC 1 cut(s) 216
BsaI GGTCTC 2 cut(s) 227, 261
BsaJI CCNNGG 3 cut(s) 63, 89, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 345
Bse3DI GCAATG 1 cut(s) 238
BseDI CCNNGG 3 cut(s) 63, 89, 339
BseLI CCNNNNNNNGG 2 cut(s) 76, 345
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 146, 207
BseXI GCAGC 3 cut(s) 270, 292, 298
BshFI GGCC 1 cut(s) 62
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 76, 345
BsmAI GTCTC 2 cut(s) 227, 261
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 2 cut(s) 227, 261
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 147, 208
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 2 cut(s) 288, 364
BspPI GGATC 2 cut(s) 326, 339
BspTNI GGTCTC 2 cut(s) 227, 261
BsrDI GCAATG 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 63, 89, 339
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 63, 339
Bst4CI ACNGT 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 155, 216
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 227, 261
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 3 cut(s) 286, 350, 359
BstSFI CTRYAG 3 cut(s) 105, 284, 360
BstV1I GCAGC 3 cut(s) 270, 292, 298
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 67, 132
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviJI RGCY 5 cut(s) 62, 104, 283, 289, 344
CviKI_1 RGCY 5 cut(s) 62, 104, 283, 289, 344
DdeI CTNAG 2 cut(s) 155, 216
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 63, 339
Eco31I GGTCTC 2 cut(s) 227, 261
Eco47I GGWCC 2 cut(s) 67, 132
EcoT14I CCWWGG 2 cut(s) 63, 339
ErhI CCWWGG 2 cut(s) 63, 339
FaiI YATR 3 cut(s) 36, 126, 227
FaqI GGGAC 1 cut(s) 326
Fnu4HI GCNGC 3 cut(s) 281, 284, 287
Fsp4HI GCNGC 3 cut(s) 281, 284, 287
FspBI CTAG 1 cut(s) 270
GluI GCNGC 3 cut(s) 281, 284, 287
GsuI CTGGAG 2 cut(s) 50, 169
HaeIII GGCC 1 cut(s) 62
HinfI GANTC 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 113, 156
Hpy188III TCNNGA 4 cut(s) 29, 167, 186, 209
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 240, 245, 345
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 243, 286, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 350, 359
HpyF3I CTNAG 2 cut(s) 155, 216
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 3 cut(s) 14, 199, 246
Lsp1109I GCAGC 3 cut(s) 270, 292, 298
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 270
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MflI RGATCY 1 cut(s) 331
MluCI AATT 3 cut(s) 12, 114, 121
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 4 cut(s) 52, 84, 94, 211
MspA1I CMGCKG 1 cut(s) 283
MwoI GCNNNNNNNGC 3 cut(s) 286, 350, 359
NdeII GATC 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 3 cut(s) 282, 285, 288
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 67, 132
PstI CTGCAG 2 cut(s) 288, 364
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 283
SatI GCNGC 3 cut(s) 281, 284, 287
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 67, 132
SetI ASST 7 cut(s) 69, 95, 137, 271, 285, 291, 296
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 3 cut(s) 105, 284, 360
SinI GGWCC 2 cut(s) 67, 132
Sse9I AATT 3 cut(s) 12, 114, 121
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 270
StyI CCWWGG 2 cut(s) 63, 339
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 12, 114, 121
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 3 cut(s) 280, 283, 286
TspGWI ACGGA 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 2 cut(s) 67, 132
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.