Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Reverse (-)

56416971 .. 56417956

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014691

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGAACTCGTTTCACACTCCAAATCTAGAGTCTTTTGAGTTTAGTGGATATCTGAAGGCTAAGGTCCATTTCGTGGATGCTCCATCAAAGTTATTAAAGGCTACAGTCAGAGTTTGGGAGACCTCATGGTCCATTGAATATTATTCTGCTATGAGAGATTTTCTTGAAAGTTTCAATTGCTCCAAAAAAGTGAAGCTACATATTGAGGATGCTGAGGGTGTCATAATACCAGAACATCGAAGAATGGAATGGTCTTCCCCATTACCTAGTATTAAGCAGCTGCAGCTATACTTTTCTGCTCCGTTGGGGGACAGAGAATATTGTTTGAGACCTTCATTGATTTGGATGGTACCATCTGCTGAGATTCTACCATTTCTAGATAATAATGATGATGATGATGAGGATGACGATGATTATGATGATGATGATGACAATGATGATGACGATGATGAGCATAACGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

157

Amino Acids

18.27

Weight (kDa)

4.21

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	140, 170, 178
AluBI	AGCT	3 cut(s)	199, 283, 289
AluI	AGCT	3 cut(s)	199, 283, 289
Alw26I	GTCTC	2 cut(s)	116, 325
ApeKI	GCWGC	3 cut(s)	280, 283, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	67, 132
AvaII	GGWCC	2 cut(s)	67, 132
BanI	GGYRCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	270, 292, 298
BccI	CCATC	3 cut(s)	94, 343, 364
BcoDI	GTCTC	2 cut(s)	116, 325
BfaI	CTAG	3 cut(s)	29, 270, 380
BfmI	CTRYAG	2 cut(s)	105, 284
BisI	GCNGC	3 cut(s)	281, 284, 287
BlsI	GCNGC	3 cut(s)	282, 285, 288
Bme18I	GGWCC	2 cut(s)	67, 132
BmgT120I	GGNCC	2 cut(s)	67, 132
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	2 cut(s)	70, 202
BpiI	GAAGAC	1 cut(s)	249
Bpu10I	CCTNAGC	2 cut(s)	63, 216
BsaI	GGTCTC	2 cut(s)	116, 325
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseGI	GGATG	4 cut(s)	85, 217, 354, 412
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	207, 354
BseXI	GCAGC	3 cut(s)	270, 292, 298
BshNI	GGYRCC	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	116, 325
BsmFI	GGGAC	1 cut(s)	326
Bso31I	GGTCTC	2 cut(s)	116, 325
BspCNI	CTCAG	2 cut(s)	208, 355
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	352
BspTNI	GGTCTC	2 cut(s)	116, 325
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	63, 216, 363
BstF5I	GGATG	4 cut(s)	85, 217, 354, 412
BstMAI	GTCTC	2 cut(s)	116, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstSFI	CTRYAG	2 cut(s)	105, 284
BstV1I	GCAGC	3 cut(s)	270, 292, 298
BstV2I	GAAGAC	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	85, 217, 354, 412
Cfr13I	GGNCC	2 cut(s)	67, 132
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	5 cut(s)	62, 104, 199, 283, 289
CviKI_1	RGCY	5 cut(s)	62, 104, 199, 283, 289
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	3 cut(s)	63, 216, 363
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Eco31I	GGTCTC	2 cut(s)	116, 325
Eco32I	GATATC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	67, 132
Eco57I	CTGAAG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	53
FaeI	CATG	1 cut(s)	132
FaiI	YATR	7 cut(s)	130, 155, 204, 227, 292, 420, 459
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	128
Fnu4HI	GCNGC	3 cut(s)	281, 284, 287
FokI	GGATG	4 cut(s)	92, 224, 361, 419
Fsp4HI	GCNGC	3 cut(s)	281, 284, 287
FspBI	CTAG	3 cut(s)	29, 270, 380
GluI	GCNGC	3 cut(s)	281, 284, 287
Hin1II	CATG	1 cut(s)	132
HinfI	GANTC	2 cut(s)	32, 367
Hpy188I	TCNGA	2 cut(s)	57, 113
Hpy188III	TCNNGA	3 cut(s)	29, 167, 380
HpyAV	CCTTC	2 cut(s)	52, 345
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	3 cut(s)	63, 216, 363
Hsp92II	CATG	1 cut(s)	132
KpnI	GGTACC	1 cut(s)	356
LmnI	GCTCC	3 cut(s)	88, 188, 307
LpnPI	CCDG	1 cut(s)	246
Lsp1109I	GCAGC	3 cut(s)	270, 292, 298
LweI	GCATC	2 cut(s)	70, 202
MaeI	CTAG	3 cut(s)	29, 270, 380
MboII	GAAGA	2 cut(s)	249, 255
MfeI	CAATTG	1 cut(s)	178
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	4 cut(s)	136, 202, 211, 397
MseI	TTAA	2 cut(s)	98, 276
MspA1I	CMGCKG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	367
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	282, 285, 288
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	67, 132
PstI	CTGCAG	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	98, 276
SatI	GCNGC	3 cut(s)	281, 284, 287
Sau96I	GGNCC	2 cut(s)	67, 132
SchI	GAGTC	1 cut(s)	41
SetI	ASST	7 cut(s)	69, 128, 201, 271, 285, 291, 337
SfaNI	GCATC	2 cut(s)	70, 202
SfcI	CTRYAG	2 cut(s)	105, 284
SgeI	CNNG	8 cut(s)	22, 41, 88, 141, 179, 245, 282, 392
SinI	GGWCC	2 cut(s)	67, 132
Sse9I	AATT	1 cut(s)	178
SspI	AATATT	2 cut(s)	143, 323
SspMI	CTAG	3 cut(s)	29, 270, 380
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	241
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	98, 276
Tru9I	TTAA	2 cut(s)	98, 276
TseI	GCWGC	3 cut(s)	280, 283, 286
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	2 cut(s)	67, 132
XbaI	TCTAGA	2 cut(s)	28, 379
XspI	CTAG	3 cut(s)	29, 270, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.