Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

15001532 .. 15003045

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCTTACAAGGGAGAAGCACGCAGCCGCAACAAGCCAAACACAAACACAAGGCTGCGGAAAAAAAAAATTGTGGAGACAAAAGCCATGGCCTCAACAAGACCTTATAATTACTTACCCGGCCTCATTATCTACCATATCCTCCAACTCCTTCCCACAAAACTTGCAGCCCAGGCTAGCTTTGTTTCCAAGCAATGGGCAGAGGCATGGTCCTCGATCCCGGTGTTCGATTTCAAGGAGGGCGATCCATACAATCATGACGGAAAATTCAAGCTCCGAATGAGGTACCAGGGAGATGCGAAAGTCCTAGATGCATGGTTGAGATCTGCAGTTGAGAGAAGCGTGAAAGAGTTAGATATAAGCCTTCGAAACGTACCGACCGTCAAACCCTACTGCTTGCCCCAAACCCTTTTTGATGCAAAGCTTTTAACCACTCTCAGTTTGGAGGATGTGAGAATAGAGGACAATGATGATCAGCCTATAAGCTTACCATCTCTAAAATCCATGTCCTTCAAAATGGTGGACTTCGAGGGCATGGCACTTTCCAACCTAATTTCAGGCTGCCCTTGGATCGAGCATTTGTCCTTAAATTTATGTGACCTCGGCTCCTGGACATGGAAATTCAAAATTTCAAGTCCGACTCTCAAATCCTTCGAAATTTTCGATTGCTATTCTCGCCACATTGAAGTTGAAGCCAAGAATCTCGAGTCTTTTAAATTTGATTCGGACTTTGAATTGCTTGAGAGCATGGCATTGTTTGATTGCACCAACATGAAATGCATTAACATTTTCAGCCAGCATCTTCAACACCTTATATTATATGCATTGTGCCAAAACAGTGTCGAGGCAACAATTAACACTCCAAATTTACATTCTTTTGATTTTAGTGGATATTTGATGGCTAACGTTTCCATGGCTCCATTGAAATTTTTGTCGGATGCAACACTCATACTTCTGGATCACATCAGAGGACCCACCTTCAGCTTGCCGTTGAATCATTTTTCTACTTTGAGAGACTATCTTGAACACTTTGATTGCTCCAAAAAATTGGAACTATACATTCACGATGCTGAGGGTGTCATGTTTCCAGAAGATTTTAGAGAGGCCTTCCCTTCACCATTACCAAATCTCAAGCATCTCAACATAGTCATGAATTCTGCAGTAGAGGGGATACAGTCTGAGTTGATGGAGTCCTTGCATTGGATGGCACCTTCTGTAGAGAACCCATCAATAGAATCCCTAAGTAGAACAAATTCGTCCAGTACAATTACAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

427

Amino Acids

48.59

Weight (kDa)

6.03

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	285
AccB1I	GGYRCC	2 cut(s)	285, 1207
AccB7I	CCANNNNNTGG	1 cut(s)	195
AciI	CCGC	2 cut(s)	28, 58
AclI	AACGTT	1 cut(s)	906
AclWI	GGATC	4 cut(s)	211, 239, 578, 966
AcuI	CTGAAG	1 cut(s)	964
AfaI	GTAC	3 cut(s)	287, 375, 1264
AfiI	CCNNNNNNNGG	3 cut(s)	195, 615, 1200
AjnI	CCWGG	3 cut(s)	171, 288, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	856, 888
AluBI	AGCT	5 cut(s)	180, 274, 424, 486, 984
AluI	AGCT	5 cut(s)	180, 274, 424, 486, 984
Alw26I	GTCTC	2 cut(s)	71, 1008
AlwI	GGATC	4 cut(s)	211, 239, 578, 966
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	3 cut(s)	90, 121, 1104
ApeKI	GCWGC	4 cut(s)	24, 55, 167, 561
Asp700I	GAANNNNTTC	1 cut(s)	1252
Asp718I	GGTACC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	210, 971
AsuC2I	CCSGG	2 cut(s)	120, 221
AsuHPI	GGTGA	1 cut(s)	1107
AsuII	TTCGAA	2 cut(s)	367, 654
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	2 cut(s)	210, 971
BanI	GGYRCC	2 cut(s)	285, 1207
BbvCI	CCTCAGC	1 cut(s)	1071
BbvI	GCAGC	4 cut(s)	36, 42, 179, 548
BccI	CCATC	5 cut(s)	499, 892, 1180, 1198, 1234
BceAI	ACGGC	1 cut(s)	973
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciT130I	CCWGG	3 cut(s)	173, 290, 610
BciVI	GTATCC	1 cut(s)	1164
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	120, 221
BcoDI	GTCTC	2 cut(s)	71, 1008
BfaI	CTAG	2 cut(s)	177, 308
BfmI	CTRYAG	3 cut(s)	327, 1158, 1215
BfuI	GTATCC	1 cut(s)	1164
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	5 cut(s)	25, 28, 56, 168, 562
BlsI	GCNGC	5 cut(s)	26, 29, 57, 169, 563
Bme1390I	CCNGG	5 cut(s)	120, 173, 221, 290, 610
Bme18I	GGWCC	2 cut(s)	210, 971
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	210, 971
BmiI	GGNNCC	5 cut(s)	287, 607, 918, 973, 1209
BmrFI	CCNGG	5 cut(s)	120, 173, 221, 290, 610
BmsI	GCATC	7 cut(s)	286, 301, 406, 808, 928, 1057, 1144
BmtI	GCTAGC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	1071
Bpu14I	TTCGAA	2 cut(s)	367, 654
BpuEI	CTTGAG	2 cut(s)	761, 1115
BpuMI	CCSGG	2 cut(s)	120, 221
BsaJI	CCNNGG	6 cut(s)	87, 171, 289, 566, 601, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 615, 1200
Bse1I	ACTGG	1 cut(s)	1260
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	3 cut(s)	173, 290, 610
BseDI	CCNNGG	6 cut(s)	87, 171, 289, 566, 601, 912
BseGI	GGATG	3 cut(s)	454, 943, 1209
BseLI	CCNNNNNNNGG	3 cut(s)	195, 615, 1200
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	451, 1062, 1170
BseNI	ACTGG	1 cut(s)	1260
BseXI	GCAGC	4 cut(s)	36, 42, 179, 548
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	92, 123, 1106
BshNI	GGYRCC	2 cut(s)	285, 1207
BsiEI	CGRYCG	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	120, 221
BslI	CCNNNNNNNGG	3 cut(s)	195, 615, 1200
BsmAI	GTCTC	2 cut(s)	71, 1008
BsnI	GGCC	3 cut(s)	92, 123, 1106
BsoBI	CYCGRG	1 cut(s)	704
Bsp119I	TTCGAA	2 cut(s)	367, 654
Bsp143I	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
Bsp19I	CCATGG	2 cut(s)	87, 912
BspACI	CCGC	2 cut(s)	28, 58
BspANI	GGCC	3 cut(s)	92, 123, 1106
BspCNI	CTCAG	3 cut(s)	450, 1063, 1171
BspHI	TCATGA	2 cut(s)	256, 1149
BspLI	GGNNCC	5 cut(s)	287, 607, 918, 973, 1209
BspMAI	CTGCAG	2 cut(s)	331, 1162
BspOI	GCTAGC	1 cut(s)	180
BspPI	GGATC	4 cut(s)	211, 239, 578, 966
BspT104I	TTCGAA	2 cut(s)	367, 654
BspT107I	GGYRCC	2 cut(s)	285, 1207
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	1260
BssECI	CCNNGG	6 cut(s)	87, 171, 289, 566, 601, 912
BssMI	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
BssT1I	CCWWGG	3 cut(s)	87, 566, 912
Bst2UI	CCWGG	3 cut(s)	173, 290, 610
Bst4CI	ACNGT	3 cut(s)	382, 839, 1176
BstBI	TTCGAA	2 cut(s)	367, 654
BstC8I	GCNNGC	5 cut(s)	22, 178, 398, 797, 986
BstDEI	CTNAG	4 cut(s)	437, 1071, 1179, 1241
BstDSI	CCRYGG	2 cut(s)	87, 912
BstF5I	GGATG	3 cut(s)	454, 943, 1209
BstKTI	GATC	6 cut(s)	219, 247, 326, 475, 573, 961
BstMAI	GTCTC	2 cut(s)	71, 1008
BstMBI	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 675
BstNI	CCWGG	3 cut(s)	173, 290, 610
BstSCI	CCNGG	5 cut(s)	118, 171, 219, 288, 608
BstSFI	CTRYAG	3 cut(s)	327, 1158, 1215
BstV1I	GCAGC	4 cut(s)	36, 42, 179, 548
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	1164
BsuRI	GGCC	3 cut(s)	92, 123, 1106
BtgI	CCRYGG	2 cut(s)	87, 912
BtsCI	GGATG	3 cut(s)	454, 943, 1209
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	5 cut(s)	22, 178, 398, 797, 986
CciI	TCATGA	2 cut(s)	256, 1149
Cfr13I	GGNCC	2 cut(s)	210, 971
Csp6I	GTAC	3 cut(s)	286, 374, 1263
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviQI	GTAC	3 cut(s)	286, 374, 1263
DdeI	CTNAG	4 cut(s)	437, 1071, 1179, 1241
DpnI	GATC	6 cut(s)	218, 246, 325, 474, 572, 960
DpnII	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
DraI	TTTAAA	1 cut(s)	715
Eco130I	CCWWGG	3 cut(s)	87, 566, 912
Eco147I	AGGCCT	1 cut(s)	1106
Eco47I	GGWCC	2 cut(s)	210, 971
Eco57I	CTGAAG	1 cut(s)	964
Eco88I	CYCGRG	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRI	GAATTC	1 cut(s)	1153
EcoRII	CCWGG	3 cut(s)	171, 288, 608
EcoT14I	CCWWGG	3 cut(s)	87, 566, 912
EcoT22I	ATGCAT	3 cut(s)	316, 782, 826
ErhI	CCWWGG	3 cut(s)	87, 566, 912
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	5 cut(s)	25, 28, 56, 168, 562
FokI	GGATG	3 cut(s)	461, 950, 1216
Fsp4HI	GCNGC	5 cut(s)	25, 28, 56, 168, 562
FspBI	CTAG	2 cut(s)	177, 308
GluI	GCNGC	5 cut(s)	25, 28, 56, 168, 562
HaeIII	GGCC	3 cut(s)	92, 123, 1106
HapII	CCGG	2 cut(s)	120, 221
HindIII	AAGCTT	2 cut(s)	422, 484
HinfI	GANTC	7 cut(s)	640, 700, 707, 722, 994, 1190, 1235
HpaII	CCGG	2 cut(s)	120, 221
HphI	GGTGA	1 cut(s)	1107
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	6 cut(s)	278, 639, 727, 937, 968, 1180
Hpy188III	TCNNGA	7 cut(s)	257, 704, 956, 1022, 1064, 1088, 1150
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	8 cut(s)	161, 374, 520, 661, 988, 1117, 1122, 1221
HpyCH4III	ACNGT	3 cut(s)	382, 839, 1176
HpyCH4IV	ACGT	2 cut(s)	372, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 675
HpyF3I	CTNAG	4 cut(s)	437, 1071, 1179, 1241
HpySE526I	ACGT	2 cut(s)	372, 906
KpnI	GGTACC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
LmnI	GCTCC	4 cut(s)	279, 611, 922, 1043
Lsp1109I	GCAGC	4 cut(s)	36, 42, 179, 548
LweI	GCATC	7 cut(s)	286, 301, 406, 808, 928, 1057, 1144
MaeI	CTAG	2 cut(s)	177, 308
MaeII	ACGT	2 cut(s)	372, 906
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	6 cut(s)	218, 246, 325, 474, 572, 960
MboI	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
MboII	GAAGA	2 cut(s)	794, 1103
MflI	RGATCY	1 cut(s)	323
MlyI	GAGTC	3 cut(s)	634, 716, 1199
MmeI	TCCRAC	4 cut(s)	169, 570, 662, 915
Mph1103I	ATGCAT	3 cut(s)	316, 782, 826
MroXI	GAANNNNTTC	1 cut(s)	1252
MseI	TTAA	5 cut(s)	428, 587, 714, 783, 855
MslI	CAYNNNNRTG	2 cut(s)	770, 1148
MspI	CCGG	2 cut(s)	120, 221
MspR9I	CCNGG	5 cut(s)	120, 173, 221, 290, 610
MvaI	CCWGG	3 cut(s)	173, 290, 610
MwoI	GCNNNNNNNGC	2 cut(s)	173, 675
NciI	CCSGG	2 cut(s)	120, 221
NcoI	CCATGG	2 cut(s)	87, 912
NdeII	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
NheI	GCTAGC	1 cut(s)	176
NlaIV	GGNNCC	5 cut(s)	287, 607, 918, 973, 1209
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	3 cut(s)	316, 782, 826
NspV	TTCGAA	2 cut(s)	367, 654
PaeR7I	CTCGAG	1 cut(s)	704
PagI	TCATGA	2 cut(s)	256, 1149
PceI	AGGCCT	1 cut(s)	1106
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 660
PdmI	GAANNNNTTC	1 cut(s)	1252
PfeI	GAWTC	4 cut(s)	700, 722, 994, 1235
PflMI	CCANNNNNTGG	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	26, 29, 57, 169, 563
PleI	GAGTC	3 cut(s)	634, 715, 1198
PpsI	GAGTC	3 cut(s)	634, 715, 1198
PpuMI	RGGWCCY	1 cut(s)	971
PsiI	TTATAA	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	906
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	3 cut(s)	171, 288, 608
PspGI	CCWGG	3 cut(s)	171, 288, 608
PspN4I	GGNNCC	5 cut(s)	287, 607, 918, 973, 1209
PspPI	GGNCC	2 cut(s)	210, 971
PspPPI	RGGWCCY	1 cut(s)	971
PstI	CTGCAG	2 cut(s)	331, 1162
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	3 cut(s)	287, 375, 1264
RsaNI	GTAC	3 cut(s)	286, 374, 1263
RseI	CAYNNNNRTG	2 cut(s)	770, 1148
SaqAI	TTAA	5 cut(s)	428, 587, 714, 783, 855
SatI	GCNGC	5 cut(s)	25, 28, 56, 168, 562
Sau3AI	GATC	6 cut(s)	216, 244, 323, 472, 570, 958
Sau96I	GGNCC	2 cut(s)	210, 971
SchI	GAGTC	3 cut(s)	634, 716, 1199
ScrFI	CCNGG	5 cut(s)	120, 173, 221, 290, 610
SfaNI	GCATC	7 cut(s)	286, 301, 406, 808, 928, 1057, 1144
SfcI	CTRYAG	3 cut(s)	327, 1158, 1215
Sfr274I	CTCGAG	1 cut(s)	704
SfuI	TTCGAA	2 cut(s)	367, 654
SinI	GGWCC	2 cut(s)	210, 971
SlaI	CTCGAG	1 cut(s)	704
SmiMI	CAYNNNNRTG	2 cut(s)	770, 1148
SmlI	CTYRAG	3 cut(s)	704, 740, 1130
SmoI	CTYRAG	3 cut(s)	704, 740, 1130
SseBI	AGGCCT	1 cut(s)	1106
SsiI	CCGC	2 cut(s)	28, 58
SspMI	CTAG	2 cut(s)	177, 308
StuI	AGGCCT	1 cut(s)	1106
StyD4I	CCNGG	5 cut(s)	118, 171, 219, 288, 608
StyI	CCWWGG	3 cut(s)	87, 566, 912
TaaI	ACNGT	3 cut(s)	382, 839, 1176
TaiI	ACGT	2 cut(s)	375, 909
TaqI	TCGA	9 cut(s)	215, 228, 367, 528, 573, 654, 663, 705, 843
TatI	WGTACW	1 cut(s)	1262
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	700, 722, 994, 1235
Tru1I	TTAA	5 cut(s)	428, 587, 714, 783, 855
Tru9I	TTAA	5 cut(s)	428, 587, 714, 783, 855
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	4 cut(s)	24, 55, 167, 561
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	788, 1166
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	844
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	210, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	1252
XspI	CTAG	2 cut(s)	177, 308
Zsp2I	ATGCAT	3 cut(s)	316, 782, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.