Rw6G007990

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
13579139 .. 13580933
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007990.1

Sequence Viewer

Length: 1413 bp
ATGACCTCCCCCAAAAGCAGACAACTCAAAACCCTAAACAACATAGAAAGTGATCAGAACCTCCAATCCGGCACCGCCGCCGCCAACTCCACCACAACTCCTTACTTACCTGACAACGTTATCGAACAAATCCTCTCCTTCCTTCCGATCAAACTCGTGACGCAGGCAACCACCGTTTCGAAGCCGTGGGCTGATTTCTGGCCTTCCTTGCCTATAATTGATTTCGATGAGGGCGATCCCACCGATCCAGACGACCCAGCCAAACATCAACGCTTCATCAGATTCTTAAGGAACTGTTTGGAACGCTGCGAGAAACAGACGCTCGTAGATAAGTTCAGGCTTCGAATGAGATACCATGGAGTTGGAGAGGACGAAGACATTGTAGACGATTGGATAGTTTTCGCAATCCTGACATGTGTAAAAGAGCTTGATCTCTGTCTAGTTCGAGGCGGCGAATTCAGAGATGTGTGGACAACTGATCTCAACGAAGACGTTGATAGACTCTACCTCATACCGCAACGAATTTTCTCTTCAAACTGTTTAACTAGTCTCAAGTTGGAGAATGTGAGCTATTTCAGTCGTGCAACTGGTACTCCTATAAGACTACCGTCATTCAAAACCATGTCCCTCAAGCATGTGGAGTGCGATGAGAAGGATGGTGACCACCGCGCCCTCCCTAGGTTAATTTCGGGGTGCCCTAGCCTCGAACACTTATCATTAAATCAGTGCAATCTTGGCTTATCCACCCTATCGCTTAAAATTTCTAGTTTCAGTCTCAAATCCTTGGAAATTATGGATTGCCATTCTTTGGATTTAGTAGTTGAGACTATCAATCTTGTATCTTTTAAATTGGTTTCAGAGTACTCCTACCCCTACCAATACGACTTGACTTTAATGAATTGCGACAAGTTGAAACATCTCCGCATCTCGAGTGTGGGGTTGAAAAAACTTTCATTGCTCTCTTGCTGTTGCAGAATGGAGAACTCCATTTTCACTCCAAATTTAGTTTCTGTTATGTTTAGCGGTCGTGTGAAGGTGAAGGTTCATTTCGTTGAAGCTCCATCAAATTTATTAGATGCTAAAATTGGCGTTTGTTTCGAGAAACGTCAGTCGACCTTTAATTATTATTCTGATCTGAGAGCTTTTCTTGAAAGCTTCAATTGCGCCAGGGAAGTGGAGATATCTATTCGTGATGTTGAGGGAGTCATAATACCAGAACCTTGCAGAATGGAATGGTCTCCACCATTACCTAGTATCAAGCTGCTGAAACTAATCTATTTAGTTCCATTCGAGGACAGACATTACAGGTTGAATTCCTCCTTGGCTTGGATAGCACCATCTGCAGAGATTCTACCCCATCAGCGTTATTTTTTCATAAGATATAATAAAGGATTGCTTTTGGGGATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

53.83

Weight (kDa)

6.39

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 111 - 287 4.7e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 163 - 319 2.1e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 71, 693
AccB7I CCANNNNNTGG 1 cut(s) 808
AccI GTMKAC 2 cut(s) 384, 1112
AccII CGCG 1 cut(s) 669
AciI CCGC 8 cut(s) 75, 78, 81, 450, 515, 667, 922, 1023
AclI AACGTT 1 cut(s) 117
AclWI GGATC 2 cut(s) 230, 239
AcsI RAATTY 6 cut(s) 455, 522, 759, 1000, 1066, 1312
AfaI GTAC 2 cut(s) 592, 863
AfiI CCNNNNNNNGG 3 cut(s) 678, 808, 1326
AflII CTTAAG 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 8 cut(s) 534, 616, 913, 943, 1055, 1151, 1159, 1312
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 1 cut(s) 1166
AjuI GAANNNNNNNTTGG 4 cut(s) 991, 1023, 1304, 1336
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 6 cut(s) 427, 570, 1058, 1142, 1155, 1261
AluI AGCT 6 cut(s) 427, 570, 1058, 1142, 1155, 1261
Alw26I GTCTC 4 cut(s) 554, 779, 818, 1242
AlwI GGATC 2 cut(s) 230, 239
Ama87I CYCGRG 1 cut(s) 928
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 306, 1261
ApoI RAATTY 6 cut(s) 455, 522, 759, 1000, 1066, 1312
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 2 cut(s) 671, 1166
AsuHPI GGTGA 2 cut(s) 671, 1048
AsuII TTCGAA 2 cut(s) 179, 343
AvaI CYCGRG 1 cut(s) 928
AvrII CCTAGG 1 cut(s) 677
BaeGI GKGCMC 1 cut(s) 698
BanI GGYRCC 2 cut(s) 71, 693
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 381, 495
BbvI GCAGC 2 cut(s) 293, 1248
BccI CCATC 4 cut(s) 650, 1069, 1345, 1365
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 1168
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 4 cut(s) 554, 779, 818, 1242
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 6 cut(s) 440, 546, 678, 699, 765, 1251
BfmI CTRYAG 1 cut(s) 1341
BfrI CTTAAG 1 cut(s) 286
BisI GCNGC 5 cut(s) 78, 81, 307, 451, 1262
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 5 cut(s) 79, 82, 308, 452, 1263
BmcAI AGTACT 1 cut(s) 863
Bme1390I CCNGG 1 cut(s) 1168
BmeT110I CYCGRG 1 cut(s) 928
BmiI GGNNCC 2 cut(s) 73, 695
BmrFI CCNGG 1 cut(s) 1168
BmsI GCATC 2 cut(s) 933, 1066
BoxI GACNNNNGTC 1 cut(s) 607
BpiI GAAGAC 2 cut(s) 381, 495
Bpu14I TTCGAA 2 cut(s) 179, 343
BpuEI CTTGAG 2 cut(s) 536, 614
BsaI GGTCTC 1 cut(s) 1242
BsaJI CCNNGG 6 cut(s) 185, 355, 677, 783, 1167, 1320
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 678, 808, 1326
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 1 cut(s) 953
BseBI CCWGG 1 cut(s) 1168
BseDI CCNNGG 6 cut(s) 185, 355, 677, 783, 1167, 1320
BseGI GGATG 2 cut(s) 661, 1410
BseLI CCNNNNNNNGG 3 cut(s) 678, 808, 1326
BseMI GCAATG 1 cut(s) 953
BseMII CTCAG 1 cut(s) 1127
BseNI ACTGG 1 cut(s) 592
BseSI GKGCMC 1 cut(s) 698
BseXI GCAGC 2 cut(s) 293, 1248
BseYI CCCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 1027
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 2 cut(s) 71, 693
BsiEI CGRYCG 1 cut(s) 1027
BsiHKCI CYCGRG 1 cut(s) 928
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 3 cut(s) 678, 808, 1326
BsmAI GTCTC 4 cut(s) 554, 779, 818, 1242
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 1 cut(s) 202
Bso31I GGTCTC 1 cut(s) 1242
BsoBI CYCGRG 1 cut(s) 928
Bsp119I TTCGAA 2 cut(s) 179, 343
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 8 cut(s) 75, 78, 81, 450, 515, 667, 922, 1023
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 1128
BspFNI CGCG 1 cut(s) 669
BspLI GGNNCC 2 cut(s) 73, 695
BspMAI CTGCAG 1 cut(s) 1345
BspPI GGATC 2 cut(s) 230, 239
BspT104I TTCGAA 2 cut(s) 179, 343
BspT107I GGYRCC 2 cut(s) 71, 693
BspTI CTTAAG 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 1242
BsrDI GCAATG 1 cut(s) 953
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 6 cut(s) 185, 355, 677, 783, 1167, 1320
BssMI GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 4 cut(s) 355, 677, 783, 1320
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 1168
Bst4CI ACNGT 4 cut(s) 175, 296, 539, 609
Bst6I CTCTTC 1 cut(s) 535
BstAFI CTTAAG 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 1340
BstBI TTCGAA 2 cut(s) 179, 343
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 1136
BstDSI CCRYGG 2 cut(s) 185, 355
BstEII GGTNACC 1 cut(s) 659
BstF5I GGATG 2 cut(s) 661, 1410
BstFNI CGCG 1 cut(s) 669
BstHHI GCGC 2 cut(s) 671, 1166
BstKTI GATC 7 cut(s) 55, 150, 238, 247, 433, 481, 1135
BstMAI GTCTC 4 cut(s) 554, 779, 818, 1242
BstMBI GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
BstMCI CGRYCG 1 cut(s) 1027
BstMWI GCNNNNNNNGC 5 cut(s) 208, 735, 1161, 1331, 1340
BstNI CCWGG 1 cut(s) 1168
BstNSI RCATGY 2 cut(s) 417, 638
BstPAI GACNNNNGTC 1 cut(s) 607
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 1166
BstSFI CTRYAG 1 cut(s) 1341
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 293, 1248
BstV2I GAAGAC 2 cut(s) 381, 495
BstXI CCANNNNNNTGG 2 cut(s) 362, 1174
BsuRI GGCC 1 cut(s) 202
BtgI CCRYGG 2 cut(s) 185, 355
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 2 cut(s) 661, 1410
BtsIMutI CAGTG 1 cut(s) 731
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 671, 1166
CseI GACGC 2 cut(s) 169, 328
Csp6I GTAC 2 cut(s) 591, 862
CviAII CATG 4 cut(s) 356, 414, 622, 635
CviQI GTAC 2 cut(s) 591, 862
DdeI CTNAG 1 cut(s) 1136
DpnI GATC 7 cut(s) 54, 149, 237, 246, 432, 480, 1134
DpnII GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
DraI TTTAAA 1 cut(s) 847
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
Eco130I CCWWGG 4 cut(s) 355, 677, 783, 1320
Eco31I GGTCTC 1 cut(s) 1242
Eco32I GATATC 1 cut(s) 1182
Eco88I CYCGRG 1 cut(s) 928
Eco91I GGTNACC 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 659
EcoRI GAATTC 2 cut(s) 455, 1312
EcoRII CCWGG 1 cut(s) 1166
EcoRV GATATC 1 cut(s) 1182
EcoT14I CCWWGG 4 cut(s) 355, 677, 783, 1320
ErhI CCWWGG 4 cut(s) 355, 677, 783, 1320
FaeI CATG 4 cut(s) 359, 417, 625, 638
FalI AAGNNNNNCTT 2 cut(s) 1380, 1412
FaqI GGGAC 1 cut(s) 610
FatI CATG 4 cut(s) 355, 413, 621, 634
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 2 cut(s) 384, 1112
Fnu4HI GCNGC 5 cut(s) 78, 81, 307, 451, 1262
FokI GGATG 1 cut(s) 668
Fsp4HI GCNGC 5 cut(s) 78, 81, 307, 451, 1262
FspBI CTAG 6 cut(s) 440, 546, 678, 699, 765, 1251
GlaI GCGC 2 cut(s) 670, 1165
GluI GCNGC 5 cut(s) 78, 81, 307, 451, 1262
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 1 cut(s) 202
HapII CCGG 1 cut(s) 69
HgaI GACGC 2 cut(s) 169, 328
HhaI GCGC 2 cut(s) 671, 1166
Hin1II CATG 4 cut(s) 359, 417, 625, 638
Hin6I GCGC 2 cut(s) 669, 1164
HinP1I GCGC 2 cut(s) 669, 1164
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HindIII AAGCTT 1 cut(s) 1153
HinfI GANTC 4 cut(s) 282, 501, 1203, 1348
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 671, 1048
Hpy166II GTNNAC 3 cut(s) 385, 471, 1113
Hpy188I TCNGA 7 cut(s) 57, 147, 281, 461, 859, 1132, 1137
Hpy188III TCNNGA 7 cut(s) 157, 248, 409, 928, 1099, 1148, 1190
Hpy8I GTNNAC 3 cut(s) 385, 471, 1113
HpyAV CCTTC 6 cut(s) 148, 152, 213, 646, 1027, 1033
HpyCH4III ACNGT 4 cut(s) 175, 296, 539, 609
HpyCH4IV ACGT 3 cut(s) 117, 492, 1105
HpyCH4V TGCA 5 cut(s) 584, 729, 972, 1224, 1343
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 735, 1161, 1331, 1340
HpyF3I CTNAG 1 cut(s) 1136
HpySE526I ACGT 3 cut(s) 117, 492, 1105
Hsp92II CATG 4 cut(s) 359, 417, 625, 638
HspAI GCGC 2 cut(s) 669, 1164
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
LmnI GCTCC 1 cut(s) 1063
Lsp1109I GCAGC 2 cut(s) 293, 1248
LweI GCATC 2 cut(s) 933, 1066
MaeI CTAG 6 cut(s) 440, 546, 678, 699, 765, 1251
MaeII ACGT 3 cut(s) 117, 492, 1105
MaeIII GTNAC 2 cut(s) 157, 659
MalI GATC 7 cut(s) 54, 149, 237, 246, 432, 480, 1134
MboI GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
MboII GAAGA 3 cut(s) 386, 500, 522
MfeI CAATTG 1 cut(s) 1159
MhlI GDGCHC 1 cut(s) 698
MlyI GAGTC 2 cut(s) 495, 1212
MmeI TCCRAC 2 cut(s) 343, 537
MseI TTAA 8 cut(s) 287, 542, 683, 719, 756, 846, 893, 1119
MspCI CTTAAG 1 cut(s) 286
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 1168
MunI CAATTG 1 cut(s) 1159
MvaI CCWGG 1 cut(s) 1168
MvnI CGCG 1 cut(s) 669
MwoI GCNNNNNNNGC 5 cut(s) 208, 735, 1161, 1331, 1340
NcoI CCATGG 1 cut(s) 355
NdeII GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
NlaIII CATG 4 cut(s) 359, 417, 625, 638
NlaIV GGNNCC 2 cut(s) 73, 695
NmuCI GTSAC 2 cut(s) 157, 659
NspI RCATGY 2 cut(s) 417, 638
NspV TTCGAA 2 cut(s) 179, 343
PaeR7I CTCGAG 1 cut(s) 928
PciI ACATGT 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 2 cut(s) 282, 1348
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 5 cut(s) 79, 82, 308, 452, 1263
PleI GAGTC 2 cut(s) 495, 1211
PpsI GAGTC 2 cut(s) 495, 1211
PscI ACATGT 1 cut(s) 413
PshAI GACNNNNGTC 1 cut(s) 607
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 1166
PspEI GGTNACC 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 1166
PspN4I GGNNCC 2 cut(s) 73, 695
PstI CTGCAG 1 cut(s) 1345
RsaI GTAC 2 cut(s) 592, 863
RsaNI GTAC 2 cut(s) 591, 862
SalI GTCGAC 1 cut(s) 1111
SaqAI TTAA 8 cut(s) 287, 542, 683, 719, 756, 846, 893, 1119
SatI GCNGC 5 cut(s) 78, 81, 307, 451, 1262
Sau3AI GATC 7 cut(s) 52, 147, 235, 244, 430, 478, 1132
ScaI AGTACT 1 cut(s) 863
SchI GAGTC 2 cut(s) 495, 1212
ScrFI CCNGG 1 cut(s) 1168
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 2 cut(s) 933, 1066
SfcI CTRYAG 1 cut(s) 1341
Sfr274I CTCGAG 1 cut(s) 928
SfuI TTCGAA 2 cut(s) 179, 343
SlaI CTCGAG 1 cut(s) 928
SmlI CTYRAG 4 cut(s) 286, 551, 629, 928
SmoI CTYRAG 4 cut(s) 286, 551, 629, 928
SpeI ACTAGT 1 cut(s) 545
SsiI CCGC 8 cut(s) 75, 78, 81, 450, 515, 667, 922, 1023
SspMI CTAG 6 cut(s) 440, 546, 678, 699, 765, 1251
StyD4I CCNGG 1 cut(s) 1166
StyI CCWWGG 4 cut(s) 355, 677, 783, 1320
TaaI ACNGT 4 cut(s) 175, 296, 539, 609
TaiI ACGT 3 cut(s) 120, 495, 1108
TatI WGTACW 1 cut(s) 861
TauI GCSGC 3 cut(s) 80, 83, 453
TfiI GAWTC 2 cut(s) 282, 1348
Tru1I TTAA 8 cut(s) 287, 542, 683, 719, 756, 846, 893, 1119
Tru9I TTAA 8 cut(s) 287, 542, 683, 719, 756, 846, 893, 1119
TscAI CASTG 1 cut(s) 731
TseFI GTSAC 2 cut(s) 157, 659
TseI GCWGC 2 cut(s) 306, 1261
Tsp45I GTSAC 2 cut(s) 157, 659
TspDTI ATGAA 5 cut(s) 265, 911, 942, 1034, 1363
TspRI CASTG 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 808
Vha464I CTTAAG 1 cut(s) 286
XapI RAATTY 6 cut(s) 455, 522, 759, 1000, 1066, 1312
XceI RCATGY 2 cut(s) 417, 638
XhoI CTCGAG 1 cut(s) 928
XmaJI CCTAGG 1 cut(s) 677
XmiI GTMKAC 2 cut(s) 384, 1112
XspI CTAG 6 cut(s) 440, 546, 678, 699, 765, 1251
ZrmI AGTACT 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.