Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Reverse (-)

13095850 .. 13096612

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG083400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGAACGCAATTTTCACTCCAAATCTGGAGTATATTCTGTTTAGTGGTGTTGCGGAGGCCAAGGTCCATTTTGTGGAATCTCCGCCGAGTTTAAAAGTGGAGATAGATATTCGTGATGCTGAGGGTGTCATAATATCAGAACATTGCAGAAGGGAAGGGTCTCCACCATTACCTAGTGTCAAGCAGCTGCAGCTAACCTTTGCTGTTCCGTTAGGGGACAGAGATTATTGGTTGGATCCTTCCTTAATTGGCTTGGATAGCACCATCTGCAGAGATTCTACCTCATCGATATCATCCCCCCACCATATCTGTGCAAATAGAATAGCCCATTTATACAAAATGGTACAGAATCAGAAGTTGGCAGAGATCCTCCCTGAGGATTTGGTCAAGAGGCGCATGGTACATGAAGGAACCTGTGGAAATCTGAGAAGAAGTTCACGAGGGATGCAAAGGTCAAGATCGATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.68

Weight (kDa)

7.74

Isoelectric Point (pI)

71.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	2 cut(s)	56, 86
AclWI	GGATC	3 cut(s)	233, 246, 364
AfaI	GTAC	2 cut(s)	348, 405
AfiI	CCNNNNNNNGG	2 cut(s)	76, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	2 cut(s)	190, 196
AluI	AGCT	2 cut(s)	190, 196
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	3 cut(s)	233, 246, 364
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	187, 190, 193
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	177, 199, 205
BccI	CCATC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	2 cut(s)	191, 271
BisI	GCNGC	3 cut(s)	188, 191, 194
BlsI	GCNGC	3 cut(s)	189, 192, 195
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	240, 415
BmsI	GCATC	2 cut(s)	109, 438
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	123
Bsa29I	ATCGAT	2 cut(s)	290, 464
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 379
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	145
BseCI	ATCGAT	2 cut(s)	290, 464
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	296, 453
BseLI	CCNNNNNNNGG	2 cut(s)	76, 379
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	3 cut(s)	114, 369, 419
BseXI	GCAGC	3 cut(s)	177, 199, 205
BshFI	GGCC	1 cut(s)	62
BshVI	ATCGAT	2 cut(s)	290, 464
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	76, 379
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	238, 369, 461
BspACI	CCGC	2 cut(s)	56, 86
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	3 cut(s)	115, 370, 420
BspDI	ATCGAT	2 cut(s)	290, 464
BspLI	GGNNCC	2 cut(s)	240, 415
BspMAI	CTGCAG	2 cut(s)	195, 275
BspPI	GGATC	3 cut(s)	233, 246, 364
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	238, 369, 461
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	123, 378, 428
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	296, 453
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	241, 372, 464
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	238, 369, 461
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 261, 270
BstSFI	CTRYAG	2 cut(s)	191, 271
BstV1I	GCAGC	3 cut(s)	177, 199, 205
BstX2I	RGATCY	2 cut(s)	238, 369
BstYI	RGATCY	2 cut(s)	238, 369
Bsu15I	ATCGAT	2 cut(s)	290, 464
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	2 cut(s)	290, 464
BtsCI	GGATG	2 cut(s)	296, 453
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	2 cut(s)	290, 464
Csp6I	GTAC	2 cut(s)	347, 404
CviAII	CATG	2 cut(s)	400, 407
CviJI	RGCY	5 cut(s)	62, 190, 196, 255, 329
CviKI_1	RGCY	5 cut(s)	62, 190, 196, 255, 329
CviQI	GTAC	2 cut(s)	347, 404
DdeI	CTNAG	3 cut(s)	123, 378, 428
DpnI	GATC	3 cut(s)	240, 371, 463
DpnII	GATC	3 cut(s)	238, 369, 461
DraI	TTTAAA	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRV	GATATC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	403, 410
FaiI	YATR	6 cut(s)	36, 134, 309, 337, 401, 408
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	399, 406
Fnu4HI	GCNGC	3 cut(s)	188, 191, 194
FokI	GGATG	2 cut(s)	283, 460
Fsp4HI	GCNGC	3 cut(s)	188, 191, 194
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	3 cut(s)	188, 191, 194
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	403, 410
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	80, 278, 352
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	3 cut(s)	142, 357, 429
Hpy188III	TCNNGA	5 cut(s)	29, 116, 391, 441, 459
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	4 cut(s)	147, 152, 252, 404
HpyCH4V	TGCA	5 cut(s)	150, 193, 273, 317, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 261, 270
HpyF3I	CTNAG	3 cut(s)	123, 378, 428
Hsp92II	CATG	2 cut(s)	403, 410
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	238, 369, 461
LpnPI	CCDG	3 cut(s)	14, 390, 430
Lsp1109I	GCAGC	3 cut(s)	177, 199, 205
LweI	GCATC	2 cut(s)	109, 438
MaeI	CTAG	1 cut(s)	177
MalI	GATC	3 cut(s)	240, 371, 463
MboI	GATC	3 cut(s)	238, 369, 461
MboII	GAAGA	1 cut(s)	444
MflI	RGATCY	2 cut(s)	238, 369
MluCI	AATT	2 cut(s)	12, 249
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	52, 118, 295, 373, 383, 387, 437
MroXI	GAANNNNTTC	1 cut(s)	436
MseI	TTAA	2 cut(s)	95, 248
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	190
MwoI	GCNNNNNNNGC	3 cut(s)	193, 261, 270
NdeII	GATC	3 cut(s)	238, 369, 461
NlaIII	CATG	2 cut(s)	403, 410
NlaIV	GGNNCC	2 cut(s)	240, 415
NmeAIII	GCCGAG	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	80, 278, 352
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	189, 192, 195
PspN4I	GGNNCC	2 cut(s)	240, 415
PspPI	GGNCC	1 cut(s)	67
PstI	CTGCAG	2 cut(s)	195, 275
PsuI	RGATCY	2 cut(s)	238, 369
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	2 cut(s)	348, 405
RsaNI	GTAC	2 cut(s)	347, 404
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	95, 248
SatI	GCNGC	3 cut(s)	188, 191, 194
Sau3AI	GATC	3 cut(s)	238, 369, 461
Sau96I	GGNCC	1 cut(s)	67
SetI	ASST	8 cut(s)	69, 178, 192, 198, 203, 287, 419, 458
SfaNI	GCATC	2 cut(s)	109, 438
SfcI	CTRYAG	2 cut(s)	191, 271
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	2 cut(s)	12, 249
SsiI	CCGC	2 cut(s)	56, 86
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	2 cut(s)	290, 464
TasI	AATT	2 cut(s)	12, 249
TfiI	GAWTC	3 cut(s)	80, 278, 352
Tru1I	TTAA	2 cut(s)	95, 248
Tru9I	TTAA	2 cut(s)	95, 248
TseI	GCWGC	3 cut(s)	187, 190, 193
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.