Rh6AG092400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003459
Physical Location & Seq
Reverse (-)
13727889 .. 13732707
4819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG092400.1

Sequence Viewer

Length: 885 bp
ATGTCCCTCAAGCATGTGGAGTGCGATGAGAAGGATGGTGACCACCGCGCCCTCCCTAGGTTAATTTCGGGGTGCCCTAGCCTCGAACACTTATCATTAAATCAGTGCAATCTTGGCTTATCCACCCTATCGCTTAAAATTTCTAGTTTCAGTCTCAAATCCTTGGAAATTATGGATTGCCATTCTTTGGATTTAGTAGTTGAGACTATCAATCTTGTATCTTTTAAATTGGTTTCAGAGTACTCCTACCCCTACCATTACGACTTGACTTTAATGAATTGCGACAAGTTGAAACATCTCCGCATCTCTAGTGTGGGGTTGAAAAAACTTTCATTGCTCTCTTGCTGTTGCAGAATGGAGAACTCCATTTTCACTCCAAATCTAGTTTCTGTTATGTTTAGCGGTCGTGTGAAGGCGAAGGTTCATTTCGTTGAAGCTCCATCAAATTTATTAGATGCTAAAATTGGCGTTTGTTTCGAGAAACGTCAGTCGACCTTTAATTATTATTCTGATCTGAGAGCTTTTCTTGAAAGCTTCAATTGCGCCAGGGAAGTAGAGATATCTATTCGTGATGTTGAGGGAGTCATAATACCAGAACCTTGCAGAATGGAATGGTCTCCACCATTACCTAGTATCAAGCAGCTGCAACTAATCTATTTAGTTCCATTCGAGGACAGACATTACAGGTTGAATTCCTCCTTGGCTTGGATAGCACCATCTGCAGAGATTCTACCCCATCAGCGCTGTCGTCCGACTCCGAACTCTTGCCCAACGGCATCAAGGTTACAACCGACTGTCCAATCTATCGCCGTTTCCACCACCTTCTCCTTCATCAACGTCATTACGACTAGTTCAGACCAAGAGTGGAAGAGAGAGCTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

294

Amino Acids

33.35

Weight (kDa)

7.08

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 15 - 117 5.1e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 491
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 46, 301, 402
AcsI RAATTY 3 cut(s) 138, 445, 691
AfaI GTAC 1 cut(s) 242
AfeI AGCGCT 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 57, 187, 705
AgsI TTSAA 6 cut(s) 292, 322, 434, 530, 538, 691
AhlI ACTAGT 1 cut(s) 848
AjnI CCWGG 1 cut(s) 545
AjuI GAANNNNNNNTTGG 4 cut(s) 370, 402, 683, 715
AluBI AGCT 5 cut(s) 437, 521, 534, 643, 877
AluI AGCT 5 cut(s) 437, 521, 534, 643, 877
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 3 cut(s) 158, 197, 621
Aor51HI AGCGCT 1 cut(s) 743
ApeKI GCWGC 2 cut(s) 640, 643
ApoI RAATTY 3 cut(s) 138, 445, 691
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 3 cut(s) 50, 545, 744
AsuHPI GGTGA 1 cut(s) 50
AvrII CCTAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 879
BbvI GCAGC 2 cut(s) 630, 652
BccI CCATC 4 cut(s) 29, 448, 724, 744
BceAI ACGGC 2 cut(s) 789, 794
BciT130I CCWGG 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 158, 197, 621
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 8 cut(s) 57, 78, 144, 309, 383, 630, 849, 883
BfmI CTRYAG 1 cut(s) 720
BfoI RGCGCY 1 cut(s) 745
BisI GCNGC 2 cut(s) 641, 644
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 2 cut(s) 642, 645
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 547
BmsI GCATC 3 cut(s) 312, 445, 785
BplI GAGNNNNNCTC 1 cut(s) 864
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 4 cut(s) 56, 162, 546, 699
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 187, 705
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 547
BseDI CCNNGG 4 cut(s) 56, 162, 546, 699
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 3 cut(s) 57, 187, 705
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 869
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 630, 652
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 406
BshNI GGYRCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 879
BslI CCNNNNNNNGG 3 cut(s) 57, 187, 705
BsmAI GTCTC 3 cut(s) 158, 197, 621
Bso31I GGTCTC 1 cut(s) 621
Bsp1286I GDGCHC 2 cut(s) 77, 879
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 3 cut(s) 46, 301, 402
BspCNI CTCAG 1 cut(s) 507
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 724
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 332
BssECI CCNNGG 4 cut(s) 56, 162, 546, 699
BssMI GATC 1 cut(s) 511
BssT1I CCWWGG 3 cut(s) 56, 162, 699
Bst2UI CCWGG 1 cut(s) 547
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 1 cut(s) 863
BstAPI GCANNNNNTGC 1 cut(s) 719
BstDEI CTNAG 1 cut(s) 515
BstEII GGTNACC 1 cut(s) 38
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 745
BstHHI GCGC 3 cut(s) 50, 545, 744
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 3 cut(s) 158, 197, 621
BstMBI GATC 1 cut(s) 511
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 4 cut(s) 114, 540, 710, 719
BstNI CCWGG 1 cut(s) 547
BstNSI RCATGY 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 545
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 630, 652
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 110
CfoI GCGC 3 cut(s) 50, 545, 744
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 14
CviJI RGCY 8 cut(s) 81, 117, 437, 521, 534, 643, 704, 877
CviKI_1 RGCY 8 cut(s) 81, 117, 437, 521, 534, 643, 704, 877
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 515
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 863
EarI CTCTTC 1 cut(s) 863
Ecl136II GAGCTC 1 cut(s) 877
Eco130I CCWWGG 3 cut(s) 56, 162, 699
Eco24I GRGCYC 1 cut(s) 879
Eco31I GGTCTC 1 cut(s) 621
Eco32I GATATC 1 cut(s) 561
Eco47III AGCGCT 1 cut(s) 743
Eco53kI GAGCTC 1 cut(s) 877
Eco91I GGTNACC 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 877
EcoO65I GGTNACC 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 691
EcoRII CCWGG 1 cut(s) 545
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 3 cut(s) 56, 162, 699
EcoT38I GRGCYC 1 cut(s) 879
ErhI CCWWGG 3 cut(s) 56, 162, 699
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 173, 395, 587
FatI CATG 1 cut(s) 13
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 2 cut(s) 641, 644
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 879
Fsp4HI GCNGC 2 cut(s) 641, 644
FspBI CTAG 8 cut(s) 57, 78, 144, 309, 383, 630, 849, 883
GlaI GCGC 3 cut(s) 49, 544, 743
GluI GCNGC 2 cut(s) 641, 644
HaeII RGCGCY 1 cut(s) 745
HhaI GCGC 3 cut(s) 50, 545, 744
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 3 cut(s) 48, 543, 742
HinP1I GCGC 3 cut(s) 48, 543, 742
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 3 cut(s) 582, 727, 754
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 6 cut(s) 238, 511, 516, 753, 759, 856
Hpy188III TCNNGA 3 cut(s) 478, 527, 569
Hpy8I GTNNAC 1 cut(s) 492
HpyAV CCTTC 5 cut(s) 25, 406, 412, 832, 838
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 2 cut(s) 484, 837
HpyCH4V TGCA 5 cut(s) 108, 351, 603, 646, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 540, 710, 719
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 2 cut(s) 484, 837
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 3 cut(s) 48, 543, 742
Kzo9I GATC 1 cut(s) 511
LmnI GCTCC 2 cut(s) 442, 882
LpnPI CCDG 4 cut(s) 532, 559, 606, 670
Lsp1109I GCAGC 2 cut(s) 630, 652
LweI GCATC 3 cut(s) 312, 445, 785
MaeI CTAG 8 cut(s) 57, 78, 144, 309, 383, 630, 849, 883
MaeII ACGT 2 cut(s) 484, 837
MaeIII GTNAC 2 cut(s) 38, 783
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 1 cut(s) 880
MfeI CAATTG 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 77, 879
MlyI GAGTC 2 cut(s) 591, 748
MmeI TCCRAC 1 cut(s) 776
MnlI CCTC 6 cut(s) 17, 62, 92, 571, 664, 706
MseI TTAA 6 cut(s) 62, 98, 135, 225, 272, 498
MspA1I CMGCKG 1 cut(s) 643
MspR9I CCNGG 1 cut(s) 547
MunI CAATTG 1 cut(s) 538
MvaI CCWGG 1 cut(s) 547
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 114, 540, 710, 719
NdeII GATC 1 cut(s) 511
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 17
PfeI GAWTC 1 cut(s) 727
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 2 cut(s) 642, 645
PleI GAGTC 2 cut(s) 590, 748
PpsI GAGTC 2 cut(s) 590, 748
Psp124BI GAGCTC 1 cut(s) 879
Psp6I CCWGG 1 cut(s) 545
PspEI GGTNACC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 545
PspN4I GGNNCC 1 cut(s) 74
PstI CTGCAG 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 643
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 879
SalI GTCGAC 1 cut(s) 490
SaqAI TTAA 6 cut(s) 62, 98, 135, 225, 272, 498
SatI GCNGC 2 cut(s) 641, 644
Sau3AI GATC 1 cut(s) 511
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 2 cut(s) 591, 748
ScrFI CCNGG 1 cut(s) 547
SduI GDGCHC 2 cut(s) 77, 879
SfaNI GCATC 3 cut(s) 312, 445, 785
SfcI CTRYAG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 848
SsiI CCGC 3 cut(s) 46, 301, 402
SspMI CTAG 8 cut(s) 57, 78, 144, 309, 383, 630, 849, 883
SstI GAGCTC 1 cut(s) 879
StyD4I CCNGG 1 cut(s) 545
StyI CCWWGG 3 cut(s) 56, 162, 699
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 2 cut(s) 487, 840
TaqI TCGA 4 cut(s) 84, 477, 491, 669
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 6 cut(s) 62, 98, 135, 225, 272, 498
Tru9I TTAA 6 cut(s) 62, 98, 135, 225, 272, 498
TscAI CASTG 1 cut(s) 110
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 2 cut(s) 640, 643
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 4 cut(s) 290, 321, 413, 820
TspRI CASTG 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 187
XapI RAATTY 3 cut(s) 138, 445, 691
XceI RCATGY 1 cut(s) 17
XmaJI CCTAGG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 8 cut(s) 57, 78, 144, 309, 383, 630, 849, 883
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.