Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001228.1

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Reverse (-)

75747 .. 81207

Gene Structure 5461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001228.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

atgacctcccccaaaagcagacaactcaaaaccctaaacaacatagaaaatgatcagaacctccaatccggcaccgccgccgccaactccaccacaactccttacttacctgacaacgttatcgaacaaatcctctccttccttccgatcaaactcgtgacgcaggcaaccaccgtttcgaagccgtgggctgatttctggccttccttgcctataattgatttcgatgagggcgatcccaccgatccagacgacccagccaaatatcaacgcttcatcagattcttaaggaactgtttggaacgctgcgagaaacagacgctcgtagataagttcaggcttcgaatgagataccatggagttggagaggacgaagacattgtagacgattggatagttttcgcaatcctgacatgtgtaaaagagtttgatctctgtctagttcgaggcggcgaattcagagatgtgtggacaactgatctcaacgaagacgttgatagactctacctcataccgcaacgaattttctcttcaaactgtttaactagtctcaagttggagaatgtgagctatttcagtcgtgcaactggtactcctataagactaccgtcattgaaaaccatgtccctcaagcatgtggagtgcgatgagaaggatggtgaccaccgcgccctccctaggttaatttcggggtgccctagcctcgaacacttatcattaaatcagtgcaatcttggcttatccaccctatcgcttaaaatttctagtttcagtctcaaatacttggaaattatggattgccattctttggatttagtagttgagactatcaatcttgtatcttttaaattggtttcagagtactcctacccctaccaatacgacttgactttaatgaattgcgacaagttgaaacatctccgcatctcgagtatggggttgaaaaaactttcattgttctcttgctgttgcagaatggagaactccattttcactccaaatttagtttctgttatgtttagcggtcgtgtgaaggcgaaggttcatttcgttgaagctccatcaaatttattagatgctaaaattggcgtttgtttcgagaaacgtcagtcgacctttaattattattctgatctgagaacttttcttgaaagcttcaattgcgccagggaagtggagatatctattcgtgatgttgagtttggaagtgttttgagtttcataatttcatttgatggaagagggaggaggatattggtgaatcctcagtcgtgtaatgtcgaaggctggtggcggcaaggaaacgaccccgtattggtggcatggatggggttcgttaacagtgttaagaggcttcagcgacgtgaaatcatctccaagtgtgaccgggcttttactatgagcgatgcccaggagaggtctcggaatattcgatctctgggtaaaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

483

Amino Acids

55.35

Weight (kDa)

7.01

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 693
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccI	GTMKAC	2 cut(s)	384, 1112
AccII	CGCG	1 cut(s)	669
AciI	CCGC	9 cut(s)	75, 78, 81, 450, 515, 667, 922, 1023, 1294
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	2 cut(s)	230, 239
AcsI	RAATTY	5 cut(s)	455, 522, 759, 1000, 1066
AcuI	CTGAAG	1 cut(s)	1340
AfaI	GTAC	2 cut(s)	592, 863
AfiI	CCNNNNNNNGG	4 cut(s)	678, 808, 1315, 1416
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	7 cut(s)	534, 616, 913, 943, 1055, 1151, 1159
AhlI	ACTAGT	1 cut(s)	545
AjiI	CACGTC	1 cut(s)	1364
AjnI	CCWGG	2 cut(s)	1166, 1410
AjuI	GAANNNNNNNTTGG	2 cut(s)	991, 1023
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	3 cut(s)	570, 1058, 1155
AluI	AGCT	3 cut(s)	570, 1058, 1155
Alw26I	GTCTC	4 cut(s)	554, 779, 818, 1425
AlwI	GGATC	2 cut(s)	230, 239
Ama87I	CYCGRG	1 cut(s)	928
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	5 cut(s)	455, 522, 759, 1000, 1066
AspA2I	CCTAGG	1 cut(s)	677
AspLEI	GCGC	2 cut(s)	671, 1166
AsuC2I	CCSGG	1 cut(s)	1388
AsuHPI	GGTGA	2 cut(s)	671, 1270
AsuII	TTCGAA	2 cut(s)	179, 343
AvaI	CYCGRG	1 cut(s)	928
AvrII	CCTAGG	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	71, 693
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	381, 495
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	650, 1069, 1229, 1321
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	1168, 1412
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	1388
BcoDI	GTCTC	4 cut(s)	554, 779, 818, 1425
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	5 cut(s)	440, 546, 678, 699, 765
BfrI	CTTAAG	1 cut(s)	286
BisI	GCNGC	5 cut(s)	78, 81, 307, 451, 1295
BlnI	CCTAGG	1 cut(s)	677
BlsI	GCNGC	5 cut(s)	79, 82, 308, 452, 1296
BmcAI	AGTACT	1 cut(s)	863
Bme1390I	CCNGG	3 cut(s)	1168, 1388, 1412
BmeT110I	CYCGRG	1 cut(s)	928
BmgBI	CACGTC	1 cut(s)	1364
BmiI	GGNNCC	2 cut(s)	73, 695
BmrFI	CCNGG	3 cut(s)	1168, 1388, 1412
BmsI	GCATC	3 cut(s)	933, 1066, 1396
BoxI	GACNNNNGTC	1 cut(s)	607
BpiI	GAAGAC	2 cut(s)	381, 495
Bpu14I	TTCGAA	2 cut(s)	179, 343
BpuEI	CTTGAG	2 cut(s)	536, 614
BpuMI	CCSGG	1 cut(s)	1388
BsaI	GGTCTC	1 cut(s)	1425
BsaJI	CCNNGG	5 cut(s)	185, 355, 677, 1167, 1410
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 577, 607
Bsc4I	CCNNNNNNNGG	4 cut(s)	678, 808, 1315, 1416
Bse1I	ACTGG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	1168, 1412
BseDI	CCNNGG	5 cut(s)	185, 355, 677, 1167, 1410
BseGI	GGATG	2 cut(s)	661, 1332
BseLI	CCNNNNNNNGG	4 cut(s)	678, 808, 1315, 1416
BseMII	CTCAG	2 cut(s)	1127, 1280
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	1261
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	1027
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	71, 693
BsiEI	CGRYCG	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	2 cut(s)	69, 1387
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	4 cut(s)	678, 808, 1315, 1416
BsmAI	GTCTC	4 cut(s)	554, 779, 818, 1425
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	1425
BsoBI	CYCGRG	1 cut(s)	928
Bsp119I	TTCGAA	2 cut(s)	179, 343
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp143I	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	9 cut(s)	75, 78, 81, 450, 515, 667, 922, 1023, 1294
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	2 cut(s)	1128, 1279
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	73, 695
BspPI	GGATC	2 cut(s)	230, 239
BspT104I	TTCGAA	2 cut(s)	179, 343
BspT107I	GGYRCC	2 cut(s)	71, 693
BspTI	CTTAAG	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	1425
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	5 cut(s)	185, 355, 677, 1167, 1410
BssMI	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	355, 677
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	1168, 1412
Bst4CI	ACNGT	5 cut(s)	175, 296, 539, 609, 1343
Bst6I	CTCTTC	2 cut(s)	535, 1234
BstAFI	CTTAAG	1 cut(s)	286
BstBI	TTCGAA	2 cut(s)	179, 343
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	1136, 1266
BstDSI	CCRYGG	2 cut(s)	185, 355
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	2 cut(s)	661, 1332
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	2 cut(s)	671, 1166
BstKTI	GATC	8 cut(s)	55, 150, 238, 247, 433, 481, 1135, 1436
BstMAI	GTCTC	4 cut(s)	554, 779, 818, 1425
BstMBI	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
BstMCI	CGRYCG	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 735, 1161
BstNI	CCWGG	2 cut(s)	1168, 1412
BstNSI	RCATGY	2 cut(s)	417, 638
BstPAI	GACNNNNGTC	1 cut(s)	607
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	3 cut(s)	1166, 1386, 1410
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	2 cut(s)	381, 495
BstXI	CCANNNNNNTGG	2 cut(s)	362, 1174
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	2 cut(s)	185, 355
BtgZI	GCGATG	2 cut(s)	660, 1419
BtrI	CACGTC	1 cut(s)	1364
BtsCI	GGATG	2 cut(s)	661, 1332
BtsIMutI	CAGTG	2 cut(s)	731, 1348
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	2 cut(s)	671, 1166
CseI	GACGC	2 cut(s)	169, 328
Csp6I	GTAC	2 cut(s)	591, 862
CviAII	CATG	5 cut(s)	356, 414, 622, 635, 1323
CviQI	GTAC	2 cut(s)	591, 862
DdeI	CTNAG	2 cut(s)	1136, 1266
DpnI	GATC	8 cut(s)	54, 149, 237, 246, 432, 480, 1134, 1435
DpnII	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
DraI	TTTAAA	1 cut(s)	847
Eam1104I	CTCTTC	2 cut(s)	535, 1234
EarI	CTCTTC	2 cut(s)	535, 1234
Eco130I	CCWWGG	2 cut(s)	355, 677
Eco31I	GGTCTC	1 cut(s)	1425
Eco32I	GATATC	1 cut(s)	1182
Eco57I	CTGAAG	1 cut(s)	1340
Eco88I	CYCGRG	1 cut(s)	928
Eco91I	GGTNACC	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	1166, 1410
EcoRV	GATATC	1 cut(s)	1182
EcoT14I	CCWWGG	2 cut(s)	355, 677
ErhI	CCWWGG	2 cut(s)	355, 677
FaeI	CATG	5 cut(s)	359, 417, 625, 638, 1326
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	5 cut(s)	355, 413, 621, 634, 1322
FbaI	TGATCA	1 cut(s)	52
FblI	GTMKAC	2 cut(s)	384, 1112
Fnu4HI	GCNGC	5 cut(s)	78, 81, 307, 451, 1295
FokI	GGATG	2 cut(s)	668, 1339
Fsp4HI	GCNGC	5 cut(s)	78, 81, 307, 451, 1295
FspBI	CTAG	5 cut(s)	440, 546, 678, 699, 765
GlaI	GCGC	2 cut(s)	670, 1165
GluI	GCNGC	5 cut(s)	78, 81, 307, 451, 1295
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	2 cut(s)	69, 1387
HgaI	GACGC	2 cut(s)	169, 328
HhaI	GCGC	2 cut(s)	671, 1166
Hin1II	CATG	5 cut(s)	359, 417, 625, 638, 1326
Hin6I	GCGC	2 cut(s)	669, 1164
HinP1I	GCGC	2 cut(s)	669, 1164
HincII	GTYRAC	2 cut(s)	1113, 1339
HindII	GTYRAC	2 cut(s)	1113, 1339
HindIII	AAGCTT	1 cut(s)	1153
HinfI	GANTC	3 cut(s)	282, 501, 1261
HpaI	GTTAAC	1 cut(s)	1339
HpaII	CCGG	2 cut(s)	69, 1387
HphI	GGTGA	2 cut(s)	671, 1270
Hpy166II	GTNNAC	4 cut(s)	385, 471, 1113, 1339
Hpy188I	TCNGA	8 cut(s)	57, 147, 281, 461, 859, 1132, 1137, 1425
Hpy188III	TCNNGA	7 cut(s)	157, 248, 409, 928, 1099, 1148, 1190
Hpy8I	GTNNAC	4 cut(s)	385, 471, 1113, 1339
Hpy99I	CGWCG	1 cut(s)	1365
HpyAV	CCTTC	7 cut(s)	148, 152, 213, 646, 1027, 1033, 1277
HpyCH4III	ACNGT	5 cut(s)	175, 296, 539, 609, 1343
HpyCH4IV	ACGT	4 cut(s)	117, 492, 1105, 1363
HpyCH4V	TGCA	3 cut(s)	584, 729, 972
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 735, 1161
HpyF3I	CTNAG	2 cut(s)	1136, 1266
HpySE526I	ACGT	4 cut(s)	117, 492, 1105, 1363
Hsp92II	CATG	5 cut(s)	359, 417, 625, 638, 1326
HspAI	GCGC	2 cut(s)	669, 1164
Ksp22I	TGATCA	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	1339
Kzo9I	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
LmnI	GCTCC	1 cut(s)	1063
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	3 cut(s)	933, 1066, 1396
MaeI	CTAG	5 cut(s)	440, 546, 678, 699, 765
MaeII	ACGT	4 cut(s)	117, 492, 1105, 1363
MaeIII	GTNAC	3 cut(s)	157, 659, 1382
MalI	GATC	8 cut(s)	54, 149, 237, 246, 432, 480, 1134, 1435
MboI	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
MboII	GAAGA	4 cut(s)	386, 500, 522, 1251
MfeI	CAATTG	1 cut(s)	1159
MhlI	GDGCHC	1 cut(s)	698
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	343, 537
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	2 cut(s)	69, 1387
MspR9I	CCNGG	3 cut(s)	1168, 1388, 1412
MunI	CAATTG	1 cut(s)	1159
MvaI	CCWGG	2 cut(s)	1168, 1412
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	3 cut(s)	208, 735, 1161
NciI	CCSGG	1 cut(s)	1388
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
NlaIII	CATG	5 cut(s)	359, 417, 625, 638, 1326
NlaIV	GGNNCC	2 cut(s)	73, 695
NmuCI	GTSAC	3 cut(s)	157, 659, 1382
NspI	RCATGY	2 cut(s)	417, 638
NspV	TTCGAA	2 cut(s)	179, 343
PaeR7I	CTCGAG	1 cut(s)	928
PciI	ACATGT	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 1429
PfeI	GAWTC	2 cut(s)	282, 1261
PflMI	CCANNNNNTGG	1 cut(s)	808
PkrI	GCNGC	5 cut(s)	79, 82, 308, 452, 1296
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PscI	ACATGT	1 cut(s)	413
PshAI	GACNNNNGTC	1 cut(s)	607
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	1166, 1410
PspEI	GGTNACC	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	1166, 1410
PspN4I	GGNNCC	2 cut(s)	73, 695
RsaI	GTAC	2 cut(s)	592, 863
RsaNI	GTAC	2 cut(s)	591, 862
SalI	GTCGAC	1 cut(s)	1111
SatI	GCNGC	5 cut(s)	78, 81, 307, 451, 1295
Sau3AI	GATC	8 cut(s)	52, 147, 235, 244, 430, 478, 1132, 1433
ScaI	AGTACT	1 cut(s)	863
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	3 cut(s)	1168, 1388, 1412
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	3 cut(s)	933, 1066, 1396
Sfr274I	CTCGAG	1 cut(s)	928
SfuI	TTCGAA	2 cut(s)	179, 343
SlaI	CTCGAG	1 cut(s)	928
SmlI	CTYRAG	4 cut(s)	286, 551, 629, 928
SmoI	CTYRAG	4 cut(s)	286, 551, 629, 928
SpeI	ACTAGT	1 cut(s)	545
SsiI	CCGC	9 cut(s)	75, 78, 81, 450, 515, 667, 922, 1023, 1294
SspI	AATATT	1 cut(s)	1429
SspMI	CTAG	5 cut(s)	440, 546, 678, 699, 765
StyD4I	CCNGG	3 cut(s)	1166, 1386, 1410
StyI	CCWWGG	2 cut(s)	355, 677
TaaI	ACNGT	5 cut(s)	175, 296, 539, 609, 1343
TaiI	ACGT	4 cut(s)	120, 495, 1108, 1366
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	4 cut(s)	80, 83, 453, 1297
TfiI	GAWTC	2 cut(s)	282, 1261
TscAI	CASTG	2 cut(s)	731, 1348
TseFI	GTSAC	3 cut(s)	157, 659, 1382
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	3 cut(s)	157, 659, 1382
TspDTI	ATGAA	6 cut(s)	265, 911, 942, 1034, 1210, 1218
TspRI	CASTG	2 cut(s)	731, 1348
Van91I	CCANNNNNTGG	1 cut(s)	808
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	5 cut(s)	455, 522, 759, 1000, 1066
XceI	RCATGY	2 cut(s)	417, 638
XhoI	CTCGAG	1 cut(s)	928
XmaJI	CCTAGG	1 cut(s)	677
XmiI	GTMKAC	2 cut(s)	384, 1112
XspI	CTAG	5 cut(s)	440, 546, 678, 699, 765
ZrmI	AGTACT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.