Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Reverse (-)

5062998 .. 5068875

Gene Structure 5878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGTTTCCCCCAAATTCAAACGACTCAAAACCCTAAACAACTCAGACACCGATCACAACCGCCTGATCGCCTCCGTCACCACCACCACCTCCGCCGCCGCAATTCCTTACTTACCTAACAACGTCATCGAACACATCCTCTCCTTCCTTCCGATCAAGCTCGCCGCTCGCGCCACCGCCGTTTCGAAGCAGTGGGGGTCCCTCTGGCCTTCGTTCCCCGTAATCGATTTCGACGAGGGCGACCCCTCCGATCCCGACGACCCTGCCAAGTCCCAAAGATTCCTCCATTTCTTGGAGAATTGCATGGAACGCTGCCGGAATCAGATGAGCTTAGACAAGCTCAGGCTTCGAATCGCACACAGCCTCGCCGGAGACGACATCGGCACGATTGACGAGTGCGTGACGTTTGCACTTGAGAGATTTGTGGAAGATTTGGAGATCTGTTTCGTCGAAGAAGCCGAAACTGAGGTTAGCTTGTACCTGATCCCCCAAGCAGTTTTCTCTTCACATTTCTTGGTTAGCTTGAATTTGGAGAAAGTTAAAATCGATATCAGTTCTAGAGTAGAAGCTGATGATCCTATAACCCTAAGTTCACTGGAAACCATGTCCCTCAAAGAGGTTGAATTCGACGACGAAAATGATCTTGAGATCTTGCTTTCGGGTTGCCCTCGTCTCTGGTACTTAGAATTGAATCAGTGTGATCTTGGCTACACGCTCGGGTGTCTGGAAGTTTCAATTCCAAGTCTGAAATCGTTGTATATCTCGGATTGCCATGCTTTGGATTTTGAAGTAAAATGTATCAATCTTGAGAATTTTGTATTCTTTTCTGAGTGCACCTGTTCCCACCATGGTGCTTTGACTGTGTGGGAGTGTTACAGACTGAAGCATCTCACCATTTCTAGTTTGGGCTTGACAGGACTTCTTTTGCTTGATTGTGAAAGGAGTATCGATTATGCAATTTTCACTCCAAGTCTGTTGCATTTTCTGTTTAGTGGCTTGGTGCAGGCCAAGGTTCATTTCCTGGTATCTCCAATAAGCTTGTTACATGCTACCGTCAGAATTACGAATGAGATGTGGCCCTTTGAGTATTACTCTTTTCTGAGAGATTGTCTTGAAAGTTTCAATTGCTCCAGAAAACTGGAGATAGAGATTCGTGATGCTGAGGGTGTCATAATACCAGAACATTGCAGAAAGGAGTGGTCTCCACCATTACCTAGTGTCAAGCAGCTGCAGCTAACCTTTAGTAATCCATTATGGGACAGAGATTATTGGTTGGATCCCTCCTTGTCTTGGATAGCATCATCTGCGGAGATTCTTCCCCATCAGTATAATAGCACCATCCCTCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

451

Amino Acids

51.22

Weight (kDa)

4.81

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	110 - 298	7.9e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	140 - 297	3.6e-10	FBD-associated F-box protein At5g56370, LRR repeats
LRR_2	PF07723	198 - 223	4.4e-07	Leucine Rich Repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	292, 778
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	1 cut(s)	171
AciI	CCGC	7 cut(s)	61, 93, 96, 99, 165, 177, 1307
AclWI	GGATC	5 cut(s)	245, 478, 569, 1271, 1284
AcsI	RAATTY	4 cut(s)	14, 526, 623, 811
AcuI	CTGAAG	1 cut(s)	902
AfaI	GTAC	2 cut(s)	479, 680
AfiI	CCNNNNNNNGG	4 cut(s)	292, 616, 778, 1290
AgsI	TTSAA	8 cut(s)	19, 526, 623, 691, 735, 788, 1115, 1123
AjnI	CCWGG	1 cut(s)	1020
AjuI	GAANNNNNNNTTGG	2 cut(s)	1001, 1033
AleI	CACNNNNGTG	1 cut(s)	849
AluBI	AGCT	9 cut(s)	160, 330, 340, 474, 522, 569, 1038, 1228, 1234
AluI	AGCT	9 cut(s)	160, 330, 340, 474, 522, 569, 1038, 1228, 1234
Alw21I	GWGCWC	1 cut(s)	836
Alw26I	GTCTC	3 cut(s)	366, 677, 1206
Alw44I	GTGCAC	1 cut(s)	832
AlwI	GGATC	5 cut(s)	245, 478, 569, 1271, 1284
Ama87I	CYCGRG	1 cut(s)	716
AoxI	GGCC	3 cut(s)	206, 1005, 1076
ApaLI	GTGCAC	1 cut(s)	832
ApeKI	GCWGC	4 cut(s)	312, 1225, 1228, 1231
ApoI	RAATTY	4 cut(s)	14, 526, 623, 811
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	198, 1077
AsuHPI	GGTGA	2 cut(s)	70, 883
AsuII	TTCGAA	2 cut(s)	185, 349
AvaI	CYCGRG	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	836
BamHI	GGATCC	1 cut(s)	1276
Bbv12I	GWGCWC	1 cut(s)	836
BbvCI	CCTCAGC	1 cut(s)	1161
BbvI	GCAGC	4 cut(s)	299, 1215, 1237, 1243
BccI	CCATC	2 cut(s)	1329, 1346
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	1022
BcoDI	GTCTC	3 cut(s)	366, 677, 1206
BfaI	CTAG	3 cut(s)	558, 900, 1215
BfmI	CTRYAG	1 cut(s)	1229
BglII	AGATCT	2 cut(s)	438, 648
BisI	GCNGC	7 cut(s)	96, 99, 165, 313, 1226, 1229, 1232
BlsI	GCNGC	7 cut(s)	97, 100, 166, 314, 1227, 1230, 1233
Bme1390I	CCNGG	1 cut(s)	1022
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	198, 1077
BmiI	GGNNCC	3 cut(s)	199, 200, 1278
BmrFI	CCNGG	1 cut(s)	1022
BmsI	GCATC	3 cut(s)	895, 1147, 1307
BplI	GAGNNNNNCTC	2 cut(s)	1076, 1108
BpmI	CTGGAG	2 cut(s)	1114, 1160
Bpu10I	CCTNAGC	2 cut(s)	341, 1161
Bpu14I	TTCGAA	2 cut(s)	185, 349
BpuEI	CTTGAG	3 cut(s)	434, 665, 827
Bsa29I	ATCGAT	3 cut(s)	225, 546, 948
BsaI	GGTCTC	1 cut(s)	1206
BsaJI	CCNNGG	2 cut(s)	847, 1008
BsaXI	ACNNNNNCTCC	3 cut(s)	125, 155, 1327
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 616, 778, 1290
Bse1I	ACTGG	2 cut(s)	600, 1143
Bse3DI	GCAATG	1 cut(s)	1183
BseBI	CCWGG	1 cut(s)	1022
BseCI	ATCGAT	3 cut(s)	225, 546, 948
BseDI	CCNNGG	2 cut(s)	847, 1008
BseGI	GGATG	2 cut(s)	135, 1338
BseLI	CCNNNNNNNGG	4 cut(s)	292, 616, 778, 1290
BseMI	GCAATG	1 cut(s)	1183
BseMII	CTCAG	6 cut(s)	57, 355, 456, 819, 1091, 1152
BseNI	ACTGG	2 cut(s)	600, 1143
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	4 cut(s)	299, 1215, 1237, 1243
BsgI	GTGCAG	1 cut(s)	1022
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	208, 1007, 1078
BshVI	ATCGAT	3 cut(s)	225, 546, 948
BsiHKAI	GWGCWC	1 cut(s)	836
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	2 cut(s)	316, 369
BslFI	GGGAC	4 cut(s)	184, 256, 592, 1271
BslI	CCNNNNNNNGG	4 cut(s)	292, 616, 778, 1290
BsmAI	GTCTC	3 cut(s)	366, 677, 1206
BsmBI	CGTCTC	2 cut(s)	366, 677
BsmFI	GGGAC	4 cut(s)	184, 256, 592, 1271
BsnI	GGCC	3 cut(s)	208, 1007, 1078
Bso31I	GGTCTC	1 cut(s)	1206
BsoBI	CYCGRG	1 cut(s)	716
Bsp119I	TTCGAA	2 cut(s)	185, 349
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp19I	CCATGG	1 cut(s)	847
BspACI	CCGC	7 cut(s)	61, 93, 96, 99, 165, 177, 1307
BspANI	GGCC	3 cut(s)	208, 1007, 1078
BspCNI	CTCAG	6 cut(s)	56, 354, 457, 820, 1092, 1153
BspDI	ATCGAT	3 cut(s)	225, 546, 948
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	199, 200, 1278
BspMAI	CTGCAG	1 cut(s)	1233
BspPI	GGATC	5 cut(s)	245, 478, 569, 1271, 1284
BspT104I	TTCGAA	2 cut(s)	185, 349
BspTNI	GGTCTC	1 cut(s)	1206
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	1183
BsrI	ACTGG	2 cut(s)	600, 1143
BssECI	CCNNGG	2 cut(s)	847, 1008
BssT1I	CCWWGG	2 cut(s)	847, 1008
Bst2UI	CCWGG	1 cut(s)	1022
Bst4CI	ACNGT	2 cut(s)	862, 1054
Bst6I	CTCTTC	1 cut(s)	508
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstBI	TTCGAA	2 cut(s)	185, 349
BstC8I	GCNNGC	3 cut(s)	162, 169, 1005
BstDEI	CTNAG	9 cut(s)	43, 331, 341, 465, 587, 682, 828, 1100, 1161
BstDSI	CCRYGG	1 cut(s)	847
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstF5I	GGATG	2 cut(s)	135, 1338
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstMAI	GTCTC	3 cut(s)	366, 677, 1206
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 309, 1231, 1304
BstNI	CCWGG	1 cut(s)	1022
BstNSI	RCATGY	1 cut(s)	1049
BstSCI	CCNGG	1 cut(s)	1020
BstSFI	CTRYAG	1 cut(s)	1229
BstSLI	GKGCMC	1 cut(s)	836
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	299, 1215, 1237, 1243
BstX2I	RGATCY	3 cut(s)	438, 648, 1276
BstXI	CCANNNNNNTGG	1 cut(s)	1138
BstYI	RGATCY	3 cut(s)	438, 648, 1276
Bsu15I	ATCGAT	3 cut(s)	225, 546, 948
BsuRI	GGCC	3 cut(s)	208, 1007, 1078
BsuTUI	ATCGAT	3 cut(s)	225, 546, 948
BtgI	CCRYGG	1 cut(s)	847
BtsCI	GGATG	2 cut(s)	135, 1338
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	3 cut(s)	197, 593, 701
Cac8I	GCNNGC	3 cut(s)	162, 169, 1005
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	198, 1077
ClaI	ATCGAT	3 cut(s)	225, 546, 948
Csp6I	GTAC	2 cut(s)	478, 679
CviAII	CATG	5 cut(s)	304, 604, 773, 848, 1046
CviQI	GTAC	2 cut(s)	478, 679
DdeI	CTNAG	9 cut(s)	43, 331, 341, 465, 587, 682, 828, 1100, 1161
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	847, 1008
Eco31I	GGTCTC	1 cut(s)	1206
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	902
Eco88I	CYCGRG	1 cut(s)	716
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	1020
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	847, 1008
ErhI	CCWWGG	2 cut(s)	847, 1008
Esp3I	CGTCTC	2 cut(s)	366, 677
FaeI	CATG	5 cut(s)	307, 607, 776, 851, 1049
FaqI	GGGAC	4 cut(s)	184, 256, 592, 1271
FatI	CATG	5 cut(s)	303, 603, 772, 847, 1045
Fnu4HI	GCNGC	7 cut(s)	96, 99, 165, 313, 1226, 1229, 1232
FokI	GGATG	2 cut(s)	122, 1325
Fsp4HI	GCNGC	7 cut(s)	96, 99, 165, 313, 1226, 1229, 1232
FspBI	CTAG	3 cut(s)	558, 900, 1215
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	7 cut(s)	96, 99, 165, 313, 1226, 1229, 1232
GsuI	CTGGAG	2 cut(s)	1114, 1160
HaeIII	GGCC	3 cut(s)	208, 1007, 1078
HapII	CCGG	2 cut(s)	316, 369
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	307, 607, 776, 851, 1049
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	1036
HinfI	GANTC	7 cut(s)	24, 279, 319, 351, 691, 1150, 1312
HpaII	CCGG	2 cut(s)	316, 369
HphI	GGTGA	2 cut(s)	70, 883
Hpy166II	GTNNAC	2 cut(s)	593, 834
Hpy188I	TCNGA	9 cut(s)	46, 153, 250, 324, 747, 766, 829, 1058, 1101
Hpy188III	TCNNGA	8 cut(s)	254, 558, 644, 725, 806, 1112, 1131, 1154
Hpy8I	GTNNAC	2 cut(s)	593, 834
Hpy99I	CGWCG	5 cut(s)	236, 260, 452, 632, 635
HpyAV	CCTTC	3 cut(s)	154, 158, 219
HpyCH4III	ACNGT	2 cut(s)	862, 1054
HpyCH4IV	ACGT	2 cut(s)	123, 404
HpyCH4V	TGCA	8 cut(s)	303, 410, 834, 956, 979, 1003, 1188, 1231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 309, 1231, 1304
HpyF3I	CTNAG	9 cut(s)	43, 331, 341, 465, 587, 682, 828, 1100, 1161
HpySE526I	ACGT	2 cut(s)	123, 404
Hsp92II	CATG	5 cut(s)	307, 607, 776, 851, 1049
HspAI	GCGC	1 cut(s)	171
KflI	GGGWCCC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	1133
Lsp1109I	GCAGC	4 cut(s)	299, 1215, 1237, 1243
LweI	GCATC	3 cut(s)	895, 1147, 1307
MaeI	CTAG	3 cut(s)	558, 900, 1215
MaeII	ACGT	2 cut(s)	123, 404
MaeIII	GTNAC	4 cut(s)	76, 400, 872, 1041
MbiI	CCGCTC	1 cut(s)	167
MboII	GAAGA	4 cut(s)	440, 464, 495, 1307
MfeI	CAATTG	1 cut(s)	1123
MflI	RGATCY	3 cut(s)	438, 648, 1276
MhlI	GDGCHC	1 cut(s)	836
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	1254
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	1 cut(s)	1228
MspI	CCGG	2 cut(s)	316, 369
MspR9I	CCNGG	1 cut(s)	1022
MunI	CAATTG	1 cut(s)	1123
MvaI	CCWGG	1 cut(s)	1022
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	170, 309, 1231, 1304
NcoI	CCATGG	1 cut(s)	847
NlaIII	CATG	5 cut(s)	307, 607, 776, 851, 1049
NlaIV	GGNNCC	3 cut(s)	199, 200, 1278
NmuCI	GTSAC	2 cut(s)	76, 400
NspI	RCATGY	1 cut(s)	1049
NspV	TTCGAA	2 cut(s)	185, 349
OliI	CACNNNNGTG	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	4 cut(s)	231, 237, 372, 456
PfeI	GAWTC	6 cut(s)	279, 319, 351, 691, 1150, 1312
PflMI	CCANNNNNTGG	2 cut(s)	292, 778
PkrI	GCNGC	7 cut(s)	97, 100, 166, 314, 1227, 1230, 1233
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PpuMI	RGGWCCY	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	1020
PspGI	CCWGG	1 cut(s)	1020
PspN4I	GGNNCC	3 cut(s)	199, 200, 1278
PspPI	GGNCC	2 cut(s)	198, 1077
PspPPI	RGGWCCY	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	1233
PsuI	RGATCY	3 cut(s)	438, 648, 1276
PvuII	CAGCTG	1 cut(s)	1228
RsaI	GTAC	2 cut(s)	479, 680
RsaNI	GTAC	2 cut(s)	478, 679
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	7 cut(s)	96, 99, 165, 313, 1226, 1229, 1232
Sau96I	GGNCC	2 cut(s)	198, 1077
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	1022
SduI	GDGCHC	1 cut(s)	836
SfaNI	GCATC	3 cut(s)	895, 1147, 1307
SfcI	CTRYAG	1 cut(s)	1229
SfuI	TTCGAA	2 cut(s)	185, 349
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	3 cut(s)	413, 644, 806
SmoI	CTYRAG	3 cut(s)	413, 644, 806
SsiI	CCGC	7 cut(s)	61, 93, 96, 99, 165, 177, 1307
SspMI	CTAG	3 cut(s)	558, 900, 1215
StyD4I	CCNGG	1 cut(s)	1020
StyI	CCWWGG	2 cut(s)	847, 1008
TaaI	ACNGT	2 cut(s)	862, 1054
TaiI	ACGT	2 cut(s)	126, 407
TaqI	TCGA	9 cut(s)	129, 185, 225, 231, 349, 450, 546, 627, 948
TauI	GCSGC	3 cut(s)	98, 101, 167
TfiI	GAWTC	6 cut(s)	279, 319, 351, 691, 1150, 1312
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	3 cut(s)	197, 600, 701
TseFI	GTSAC	2 cut(s)	76, 400
TseI	GCWGC	4 cut(s)	312, 1225, 1228, 1231
Tsp45I	GTSAC	2 cut(s)	76, 400
TspDTI	ATGAA	1 cut(s)	1004
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	3 cut(s)	197, 600, 701
Van91I	CCANNNNNTGG	2 cut(s)	292, 778
VneI	GTGCAC	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	614
XapI	RAATTY	4 cut(s)	14, 526, 623, 811
XbaI	TCTAGA	1 cut(s)	557
XceI	RCATGY	1 cut(s)	1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	901
XspI	CTAG	3 cut(s)	558, 900, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.