Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

56169742 .. 56171536

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATCTCCCCCAAAAGCAGCCAACTCAAAACCCTAAACAACATAGAAAATTATCAGAACCTCCAATCCGGCACCGCCGCCGCCAACTCCACCACAACTCCTTACTTACCTGACAACGTTATCGAACAAATCCTCTCCTTCCTTCCGATCAAACTCGTGACGCAGGCAACCACCGTTTCGAAGCGGTGGGCTGACTTGTGGCCTTCCTTGCCTATAATTGATTTCGATGAGGGCGATCCCAACGATCCAGGCGACCCAGCCAAACATCAACGCTTCCTCAGATTCTTAAGGAACTGTTTGGAACGCTGCGAGAAACAGACGCTCGTAGATAAGTTCAGGCTTCGAATGAGATACCATGGAGTTGGAGAGGAAGAAGACATTGTAGACGATTGGATAGTTTTCGCAATCCTGACATGTGTAAAAGAGTTTGATCTCTGTTTAGTTGGAGGCGGCGAATTCAGAGATGTGTGGACAACTGATCTGAACGAAGACGTTGATAGACTCTACCTCATACCGCAACGAATTTTCTCTTCAAACTGTTTAACTAGTCTCAAGTTGGAGAATGTGAGCTATTTCAGTCGTGCAACTGAGTGCTCCTACCCCTACCATTACGACTTGACTTTAATGAATTGTGATAAGTTGAAACATCTCCGCATCTCTAGTGTGGGGTTGAAAAAACTTTCATTGCTCTCTTGCTGTTGCGGAATGGAGAACTCAATTTTCACTCCAAATCTAGTTTCTGTTATGTTTAGCGGCCGTGTGAAGGCGAAGGTTCATTTCTTTGAAGCTCCATCAAATTTATTAGATGCTAAAATTGGAGTTTATTTTGAGAAACGTCAGTCGACCTTTAATTATTATTCTGATCTGAGAGATTTTCTTGAAACCTTCAATTGCGCCAGGGAAGTGGAGATATCTATTCGTGATGTTGAGGGAGTCATAATACCAGAACCTTGCAGAATGGAATGGTCTCCACCATTACCTAGTATCAAGCAGCTGCAACTAATCTATTTAGTTCCATTCGAGGACAGACATTACAGGTTGAATTCCTCCTTGGCTTGGATAGCACCATCTGCAGAGATTCTACCCCATCAACGTTATTTTCTCATAAGATACAATAAAGCATTGCTTTTGGGGATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

381

Amino Acids

43.87

Weight (kDa)

6.04

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	384, 842
AciI	CCGC	9 cut(s)	75, 78, 81, 184, 450, 515, 652, 702, 753
AclI	AACGTT	2 cut(s)	117, 1093
AclWI	GGATC	2 cut(s)	230, 239
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	4 cut(s)	455, 522, 796, 1042
AfiI	CCNNNNNNNGG	2 cut(s)	763, 1056
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	7 cut(s)	534, 643, 673, 785, 881, 889, 1042
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	247, 896
AjuI	GAANNNNNNNTTGG	4 cut(s)	721, 753, 1034, 1066
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	3 cut(s)	570, 788, 994
AluI	AGCT	3 cut(s)	570, 788, 994
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	554, 972
AlwI	GGATC	2 cut(s)	230, 239
AoxI	GGCC	2 cut(s)	200, 754
ApeKI	GCWGC	4 cut(s)	18, 306, 991, 994
ApoI	RAATTY	4 cut(s)	455, 522, 796, 1042
AspLEI	GCGC	1 cut(s)	896
AsuII	TTCGAA	2 cut(s)	179, 343
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	381, 495
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	4 cut(s)	30, 293, 981, 1003
BccI	CCATC	3 cut(s)	799, 1075, 1095
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	2 cut(s)	249, 898
BcoDI	GTCTC	2 cut(s)	554, 972
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	4 cut(s)	546, 660, 734, 981
BfmI	CTRYAG	1 cut(s)	1071
BfrI	CTTAAG	1 cut(s)	286
BisI	GCNGC	8 cut(s)	19, 78, 81, 307, 451, 754, 992, 995
BlsI	GCNGC	8 cut(s)	20, 79, 82, 308, 452, 755, 993, 996
Bme1390I	CCNGG	2 cut(s)	249, 898
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	249, 898
BmsI	GCATC	2 cut(s)	663, 796
BpiI	GAAGAC	2 cut(s)	381, 495
Bpu14I	TTCGAA	2 cut(s)	179, 343
BpuEI	CTTGAG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	972
BsaJI	CCNNGG	3 cut(s)	355, 897, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 1056
Bse3DI	GCAATG	2 cut(s)	683, 1121
BseBI	CCWGG	2 cut(s)	249, 898
BseDI	CCNNGG	3 cut(s)	355, 897, 1050
BseGI	GGATG	1 cut(s)	1140
BseLI	CCNNNNNNNGG	2 cut(s)	763, 1056
BseMI	GCAATG	2 cut(s)	683, 1121
BseMII	CTCAG	3 cut(s)	292, 579, 857
BseX3I	CGGCCG	1 cut(s)	754
BseXI	GCAGC	4 cut(s)	30, 293, 981, 1003
BseYI	CCCAGC	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	757
BshFI	GGCC	2 cut(s)	202, 756
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	763, 1056
BsmAI	GTCTC	2 cut(s)	554, 972
BsnI	GGCC	2 cut(s)	202, 756
Bso31I	GGTCTC	1 cut(s)	972
Bsp119I	TTCGAA	2 cut(s)	179, 343
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	9 cut(s)	75, 78, 81, 184, 450, 515, 652, 702, 753
BspANI	GGCC	2 cut(s)	202, 756
BspCNI	CTCAG	3 cut(s)	291, 580, 858
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	2 cut(s)	230, 239
BspT104I	TTCGAA	2 cut(s)	179, 343
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	972
BsrDI	GCAATG	2 cut(s)	683, 1121
BssECI	CCNNGG	3 cut(s)	355, 897, 1050
BssMI	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	355, 1050
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	249, 898
Bst4CI	ACNGT	3 cut(s)	175, 296, 539
Bst6I	CTCTTC	1 cut(s)	535
BstAFI	CTTAAG	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstBI	TTCGAA	2 cut(s)	179, 343
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	278, 588, 866
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	1140
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	7 cut(s)	6, 150, 238, 247, 433, 481, 865
BstMAI	GTCTC	2 cut(s)	554, 972
BstMBI	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
BstMCI	CGRYCG	1 cut(s)	757
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 1061, 1070
BstNI	CCWGG	2 cut(s)	249, 898
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	2 cut(s)	247, 896
BstSFI	CTRYAG	1 cut(s)	1071
BstV1I	GCAGC	4 cut(s)	30, 293, 981, 1003
BstV2I	GAAGAC	2 cut(s)	381, 495
BstXI	CCANNNNNNTGG	2 cut(s)	362, 904
BstZI	CGGCCG	1 cut(s)	754
BsuRI	GGCC	2 cut(s)	202, 756
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	1140
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	896
CseI	GACGC	2 cut(s)	169, 328
CviAII	CATG	2 cut(s)	356, 414
DdeI	CTNAG	3 cut(s)	278, 588, 866
DpnI	GATC	7 cut(s)	5, 149, 237, 246, 432, 480, 864
DpnII	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
EaeI	YGGCCR	1 cut(s)	754
EagI	CGGCCG	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
EclXI	CGGCCG	1 cut(s)	754
Eco130I	CCWWGG	2 cut(s)	355, 1050
Eco31I	GGTCTC	1 cut(s)	972
Eco32I	GATATC	1 cut(s)	912
Eco52I	CGGCCG	1 cut(s)	754
EcoRI	GAATTC	2 cut(s)	455, 1042
EcoRII	CCWGG	2 cut(s)	247, 896
EcoRV	GATATC	1 cut(s)	912
EcoT14I	CCWWGG	2 cut(s)	355, 1050
ErhI	CCWWGG	2 cut(s)	355, 1050
FaeI	CATG	2 cut(s)	359, 417
FaiI	YATR	8 cut(s)	44, 215, 357, 415, 512, 746, 938, 1106
FalI	AAGNNNNNCTT	2 cut(s)	1110, 1142
FatI	CATG	2 cut(s)	355, 413
FblI	GTMKAC	2 cut(s)	384, 842
Fnu4HI	GCNGC	8 cut(s)	19, 78, 81, 307, 451, 754, 992, 995
Fsp4HI	GCNGC	8 cut(s)	19, 78, 81, 307, 451, 754, 992, 995
FspBI	CTAG	4 cut(s)	546, 660, 734, 981
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	8 cut(s)	19, 78, 81, 307, 451, 754, 992, 995
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	202, 756
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	169, 328
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	2 cut(s)	359, 417
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HinfI	GANTC	4 cut(s)	282, 501, 933, 1078
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	3 cut(s)	385, 471, 843
Hpy188I	TCNGA	7 cut(s)	57, 147, 281, 461, 483, 862, 867
Hpy188III	TCNNGA	4 cut(s)	157, 409, 878, 920
Hpy8I	GTNNAC	3 cut(s)	385, 471, 843
HpyAV	CCTTC	6 cut(s)	148, 152, 213, 757, 763, 895
HpyCH4III	ACNGT	3 cut(s)	175, 296, 539
HpyCH4IV	ACGT	4 cut(s)	117, 492, 835, 1093
HpyCH4V	TGCA	4 cut(s)	584, 954, 997, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 1061, 1070
HpyF3I	CTNAG	3 cut(s)	278, 588, 866
HpySE526I	ACGT	4 cut(s)	117, 492, 835, 1093
Hsp92II	CATG	2 cut(s)	359, 417
HspAI	GCGC	1 cut(s)	894
Kzo9I	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
LmnI	GCTCC	2 cut(s)	599, 793
Lsp1109I	GCAGC	4 cut(s)	30, 293, 981, 1003
LweI	GCATC	2 cut(s)	663, 796
MaeI	CTAG	4 cut(s)	546, 660, 734, 981
MaeII	ACGT	4 cut(s)	117, 492, 835, 1093
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	7 cut(s)	5, 149, 237, 246, 432, 480, 864
MboI	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
MboII	GAAGA	4 cut(s)	383, 386, 500, 522
MfeI	CAATTG	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	495, 942
MmeI	TCCRAC	3 cut(s)	343, 424, 537
MseI	TTAA	4 cut(s)	287, 542, 623, 849
MspA1I	CMGCKG	1 cut(s)	994
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	249, 898
MunI	CAATTG	1 cut(s)	889
MvaI	CCWGG	2 cut(s)	249, 898
MwoI	GCNNNNNNNGC	3 cut(s)	208, 1061, 1070
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
NlaIII	CATG	2 cut(s)	359, 417
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	417
NspV	TTCGAA	2 cut(s)	179, 343
PciI	ACATGT	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 249
PfeI	GAWTC	2 cut(s)	282, 1078
PkrI	GCNGC	8 cut(s)	20, 79, 82, 308, 452, 755, 993, 996
PleI	GAGTC	2 cut(s)	495, 941
PpsI	GAGTC	2 cut(s)	495, 941
PscI	ACATGT	1 cut(s)	413
Psp1406I	AACGTT	2 cut(s)	117, 1093
Psp6I	CCWGG	2 cut(s)	247, 896
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	247, 896
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	1075
PvuII	CAGCTG	1 cut(s)	994
SalI	GTCGAC	1 cut(s)	841
SaqAI	TTAA	4 cut(s)	287, 542, 623, 849
SatI	GCNGC	8 cut(s)	19, 78, 81, 307, 451, 754, 992, 995
Sau3AI	GATC	7 cut(s)	3, 147, 235, 244, 430, 478, 862
SchI	GAGTC	2 cut(s)	495, 942
ScrFI	CCNGG	2 cut(s)	249, 898
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	2 cut(s)	663, 796
SfcI	CTRYAG	1 cut(s)	1071
SfuI	TTCGAA	2 cut(s)	179, 343
SmlI	CTYRAG	2 cut(s)	286, 551
SmoI	CTYRAG	2 cut(s)	286, 551
SpeI	ACTAGT	1 cut(s)	545
SsiI	CCGC	9 cut(s)	75, 78, 81, 184, 450, 515, 652, 702, 753
SspMI	CTAG	4 cut(s)	546, 660, 734, 981
StyD4I	CCNGG	2 cut(s)	247, 896
StyI	CCWWGG	2 cut(s)	355, 1050
TaaI	ACNGT	3 cut(s)	175, 296, 539
TaiI	ACGT	4 cut(s)	120, 495, 838, 1096
TaqI	TCGA	6 cut(s)	123, 179, 225, 343, 842, 1020
TauI	GCSGC	4 cut(s)	80, 83, 453, 756
TfiI	GAWTC	2 cut(s)	282, 1078
Tru1I	TTAA	4 cut(s)	287, 542, 623, 849
Tru9I	TTAA	4 cut(s)	287, 542, 623, 849
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	18, 306, 991, 994
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	641, 672, 764
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	4 cut(s)	455, 522, 796, 1042
XceI	RCATGY	1 cut(s)	417
XmiI	GTMKAC	2 cut(s)	384, 842
XspI	CTAG	4 cut(s)	546, 660, 734, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.