FvH4_2g09920

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
8792979 .. 8797301
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09920.t2

Sequence Viewer

Length: 1413 bp
ATGGGTTTGGCTTCTGCTTCCGTCTCTTCAATGCTAGCTGTTTTTCTGGCGTTGGGTTTAGTTTTGAATTTGGGGGTGGTCTGTAATGGAGGAAAGACCAGCACTTTTGTGAGGAAAGTGGAGAAATCTGTGGATATGCCCTTTGACAGCGATGTCTTCAAAGCGCCTCATGGCTATAATGCTCCCCAACAAGTTCATATTACACAAGGAGACCAGCTGGGGAAGGCAGTGATTGTATCATGGGTGACTGTGGACGAACCAGGTTCCAGCAAAGTGATTTATTGGAGCGCAAAGAGCAAGAAAAAGATAGCTGTGGGGAAATTTAACACCTATAAGTACTCAGATTACAGCTCTCCTTACATTCATCATGTAACAATCAGAAATTTAAAGTACAATACCAAATATTACTATGAGGTTGGAATTGGACACACAACGCGGAAGTTCTGGTTTGTAACTCCTCCGCCAGTTGGGCCAGATGTTCCTTACACTTTTGGTCTAATAGGGGATCTGGGCCAGACATTTGATTCAAATAAGACAGTCACTCATTATGAATTAAACCCACAAAAAGGACAAGCATTATTGTTTCTTGGTGACCTCTCTTATGCTGATCACTATCCCAAGCATGATAATAACAGATGGGATTCGTGGGGAAGATTTGTGGAGAGAATTACTGCTTATCAACCTTGGATATGGACTGCAGGGAATCATGAACTTGATTTTGAACCAAAAATTGGTGAAACTAAACCATGGAAGCCTTTCACTAACCGGTATCGTACCCCATTTAAGGCATCAGGGAGTACTGCCCCTTTTTGGTACTCTATCAAGAGAGCTTCGGCACACATTATTGTCTTATCTTCATATTCAGCATATGGTAAATACACTCCTCAGTACTCATGGCTGGAGGAGGAGCTACCAAAAGTTAACAGGACTGAGACCCCATGGCTGATTGTTTTACTACACTCCCCATGGTATAATAGCTACAATTACCACTACATGGAAGGAGAGACCATGAGAGTGATGTATGAGGCTTGGTTTGTGAAGTACAAAGTTGACGTGGTATTTGCTGGTCATGTCCATGCTTATGAACGAACTGAGCGTATTTCCAACATTGCATATAACATTGTGAACGGTATTTGTGTCCCCGTGAAAGATCAGTCTGCACCTGTGTACATCACCATTGGTGATGGAGGAAATATTGAAGGCTTAGCTACCAATATGACAGAACCACAGCCAGCATACTCGGCTTTTAGAGAGGCTAGTTTCGGTCATGCCACATTTGGCATCAAGAACAGAACCCATGCTTACTACAGTTGGCACCGTAACCAAGATGGGTATGCAGTGGAAGCCGACTCTATGTGGTTTTTCAACAGATACTACCATCCTGTTGATGATTCTACAAGTGCTCAATCATGA

Protein Analysis

471

Amino Acids

53.66

Weight (kDa)

8.6

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 62 - 152 6.4e-18 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 163 - 361 2.5e-26 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 1314
AccB7I CCANNNNNTGG 2 cut(s) 731, 994
AccII CGCG 1 cut(s) 436
AciI CCGC 2 cut(s) 436, 461
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 3 cut(s) 67, 320, 382
AfaI GTAC 8 cut(s) 338, 392, 775, 799, 815, 890, 1043, 1169
AfiI CCNNNNNNNGG 6 cut(s) 467, 566, 731, 784, 810, 994
AgeI ACCGGT 1 cut(s) 765
AgsI TTSAA 7 cut(s) 30, 67, 160, 528, 722, 1199, 1366
AjiI CACGTC 1 cut(s) 1054
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 8 cut(s) 38, 217, 311, 351, 830, 910, 978, 1208
AluI AGCT 8 cut(s) 38, 217, 311, 351, 830, 910, 978, 1208
Alw21I GWGCWC 1 cut(s) 1405
Alw26I GTCTC 4 cut(s) 28, 204, 926, 998
AlwI GGATC 1 cut(s) 513
AoxI GGCC 2 cut(s) 470, 511
ApoI RAATTY 3 cut(s) 67, 320, 382
ArsI GACNNNNNNTTYG 2 cut(s) 1043, 1075
AsiGI ACCGGT 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 755
AspLEI GCGC 2 cut(s) 166, 290
AspS9I GGNCC 2 cut(s) 470, 511
AsuHPI GGTGA 5 cut(s) 256, 602, 746, 1165, 1193
AsuNHI GCTAGC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 1314
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 1405
BccI CCATC 4 cut(s) 630, 1178, 1322, 1386
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 607
BcoDI GTCTC 4 cut(s) 28, 204, 926, 998
BfaI CTAG 2 cut(s) 35, 1257
BfmI CTRYAG 2 cut(s) 696, 1306
BfoI RGCGCY 1 cut(s) 167
BglI GCCNNNNNGGC 1 cut(s) 469
BlpI GCTNAGC 1 cut(s) 1204
BmcAI AGTACT 3 cut(s) 338, 799, 890
Bme1390I CCNGG 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 1054
BmgT120I GGNCC 2 cut(s) 470, 511
BmiI GGNNCC 2 cut(s) 265, 1316
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 797, 1290
BmtI GCTAGC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 920
Bpu1102I GCTNAGC 1 cut(s) 1204
BsaBI GATNNNNATC 1 cut(s) 612
BsaI GGTCTC 3 cut(s) 204, 926, 998
BsaJI CCNNGG 4 cut(s) 683, 746, 938, 965
BsaWI WCCGGW 1 cut(s) 765
Bsc4I CCNNNNNNNGG 6 cut(s) 467, 566, 731, 784, 810, 994
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 1107
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 683, 746, 938, 965
BseGI GGATG 1 cut(s) 1378
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 6 cut(s) 467, 566, 731, 784, 810, 994
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 4 cut(s) 354, 899, 921, 1083
BseNI ACTGG 1 cut(s) 464
BseRI GAGGAG 4 cut(s) 447, 873, 917, 920
BseYI CCCAGC 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 1143
Bsh1236I CGCG 1 cut(s) 436
BshFI GGCC 2 cut(s) 472, 513
BshNI GGYRCC 1 cut(s) 1314
BshTI ACCGGT 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 1405
BsiSI CCGG 1 cut(s) 766
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 6 cut(s) 467, 566, 731, 784, 810, 994
BsmAI GTCTC 4 cut(s) 28, 204, 926, 998
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 1124
BsnI GGCC 2 cut(s) 472, 513
Bso31I GGTCTC 3 cut(s) 204, 926, 998
Bsp1286I GDGCHC 1 cut(s) 1405
Bsp1407I TGTACA 1 cut(s) 1167
Bsp143I GATC 3 cut(s) 505, 607, 1150
Bsp1720I GCTNAGC 1 cut(s) 1204
Bsp19I CCATGG 3 cut(s) 746, 938, 965
BspACI CCGC 2 cut(s) 436, 461
BspANI GGCC 2 cut(s) 472, 513
BspCNI CTCAG 4 cut(s) 353, 898, 922, 1084
BspFNI CGCG 1 cut(s) 436
BspHI TCATGA 2 cut(s) 706, 1409
BspLI GGNNCC 2 cut(s) 265, 1316
BspMAI CTGCAG 1 cut(s) 700
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 1314
BspTNI GGTCTC 3 cut(s) 204, 926, 998
BsrDI GCAATG 1 cut(s) 1107
BsrFI RCCGGY 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 1167
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 4 cut(s) 683, 746, 938, 965
BssMI GATC 3 cut(s) 505, 607, 1150
BssT1I CCWWGG 4 cut(s) 683, 746, 938, 965
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 5 cut(s) 250, 538, 1130, 1310, 1319
Bst6I CTCTTC 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 1167
BstC8I GCNNGC 2 cut(s) 36, 1233
BstDEI CTNAG 5 cut(s) 340, 885, 930, 1092, 1204
BstDSI CCRYGG 3 cut(s) 746, 938, 965
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 1 cut(s) 1378
BstFNI CGCG 1 cut(s) 436
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 166, 290
BstKTI GATC 3 cut(s) 508, 610, 1153
BstMAI GTCTC 4 cut(s) 28, 204, 926, 998
BstMBI GATC 3 cut(s) 505, 607, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 294, 469, 1241, 1343
BstNI CCWGG 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 2 cut(s) 696, 1306
BstUI CGCG 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BsuRI GGCC 2 cut(s) 472, 513
BtgI CCRYGG 3 cut(s) 746, 938, 965
BtgZI GCGATG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 1054
BtsCI GGATG 1 cut(s) 1378
BtsI GCAGTG 2 cut(s) 234, 1344
BtsIMutI CAGTG 2 cut(s) 234, 1344
Cac8I GCNNGC 2 cut(s) 36, 1233
CciI TCATGA 2 cut(s) 706, 1409
CfoI GCGC 2 cut(s) 166, 290
Cfr10I RCCGGY 1 cut(s) 765
Cfr13I GGNCC 2 cut(s) 470, 511
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 8 cut(s) 337, 391, 774, 798, 814, 889, 1042, 1168
CspAI ACCGGT 1 cut(s) 765
CviQI GTAC 8 cut(s) 337, 391, 774, 798, 814, 889, 1042, 1168
DdeI CTNAG 5 cut(s) 340, 885, 930, 1092, 1204
DpnI GATC 3 cut(s) 507, 609, 1152
DpnII GATC 3 cut(s) 505, 607, 1150
DraI TTTAAA 1 cut(s) 387
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 450
Eco130I CCWWGG 4 cut(s) 683, 746, 938, 965
Eco31I GGTCTC 3 cut(s) 204, 926, 998
Eco91I GGTNACC 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 4 cut(s) 683, 746, 938, 965
ErhI CCWWGG 4 cut(s) 683, 746, 938, 965
Esp3I CGTCTC 1 cut(s) 28
FaqI GGGAC 1 cut(s) 1124
FauNDI CATATG 1 cut(s) 868
FbaI TGATCA 1 cut(s) 607
FokI GGATG 1 cut(s) 1365
FspBI CTAG 2 cut(s) 35, 1257
GlaI GCGC 2 cut(s) 165, 289
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 920
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 2 cut(s) 472, 513
HapII CCGG 1 cut(s) 766
HhaI GCGC 2 cut(s) 166, 290
Hin6I GCGC 2 cut(s) 164, 288
HinP1I GCGC 2 cut(s) 164, 288
HincII GTYRAC 2 cut(s) 922, 1051
HindII GTYRAC 2 cut(s) 922, 1051
HinfI GANTC 5 cut(s) 524, 641, 703, 1349, 1391
HpaI GTTAAC 1 cut(s) 922
HpaII CCGG 1 cut(s) 766
HphI GGTGA 5 cut(s) 256, 602, 746, 1165, 1193
Hpy166II GTNNAC 5 cut(s) 253, 922, 1051, 1126, 1168
Hpy188I TCNGA 2 cut(s) 343, 380
Hpy188III TCNNGA 4 cut(s) 707, 823, 1285, 1410
Hpy8I GTNNAC 5 cut(s) 253, 922, 1051, 1126, 1168
HpyAV CCTTC 3 cut(s) 217, 992, 1193
HpyCH4III ACNGT 5 cut(s) 250, 538, 1130, 1310, 1319
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 4 cut(s) 698, 1112, 1160, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 294, 469, 1241, 1343
HpyF3I CTNAG 5 cut(s) 340, 885, 930, 1092, 1204
HpySE526I ACGT 1 cut(s) 1053
HspAI GCGC 2 cut(s) 164, 288
Ksp22I TGATCA 1 cut(s) 607
KspAI GTTAAC 1 cut(s) 922
Kzo9I GATC 3 cut(s) 505, 607, 1150
LmnI GCTCC 3 cut(s) 187, 285, 907
LweI GCATC 2 cut(s) 797, 1290
MabI ACCWGGT 1 cut(s) 259
MaeI CTAG 2 cut(s) 35, 1257
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 6 cut(s) 244, 370, 451, 538, 590, 1319
MalI GATC 3 cut(s) 507, 609, 1152
MboI GATC 3 cut(s) 505, 607, 1150
MboII GAAGA 4 cut(s) 18, 148, 663, 846
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 1405
MluCI AATT 8 cut(s) 67, 320, 382, 420, 551, 666, 729, 982
MlyI GAGTC 1 cut(s) 1343
MmeI TCCRAC 2 cut(s) 397, 1128
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 5 cut(s) 324, 386, 554, 783, 921
MslI CAYNNNNRTG 4 cut(s) 107, 1013, 1074, 1080
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 1 cut(s) 766
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 4 cut(s) 294, 469, 1241, 1343
NcoI CCATGG 3 cut(s) 746, 938, 965
NdeI CATATG 1 cut(s) 868
NdeII GATC 3 cut(s) 505, 607, 1150
NheI GCTAGC 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 265, 1316
NmeAIII GCCGAG 1 cut(s) 1220
NmuCI GTSAC 3 cut(s) 244, 538, 590
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 2 cut(s) 706, 1409
PcsI WCGNNNNNNNCGW 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 4 cut(s) 524, 641, 703, 1391
PflMI CCANNNNNTGG 2 cut(s) 731, 994
PinAI ACCGGT 1 cut(s) 765
PleI GAGTC 1 cut(s) 1343
PpsI GAGTC 1 cut(s) 1343
Psp6I CCWGG 1 cut(s) 259
PspEI GGTNACC 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 265, 1316
PspPI GGNCC 2 cut(s) 470, 511
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 217
RsaI GTAC 8 cut(s) 338, 392, 775, 799, 815, 890, 1043, 1169
RsaNI GTAC 8 cut(s) 337, 391, 774, 798, 814, 889, 1042, 1168
RseI CAYNNNNRTG 4 cut(s) 107, 1013, 1074, 1080
SaqAI TTAA 5 cut(s) 324, 386, 554, 783, 921
Sau3AI GATC 3 cut(s) 505, 607, 1150
Sau96I GGNCC 2 cut(s) 470, 511
ScaI AGTACT 3 cut(s) 338, 799, 890
SchI GAGTC 1 cut(s) 1343
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 1405
SexAI ACCWGGT 1 cut(s) 259
SfaNI GCATC 2 cut(s) 797, 1290
SfcI CTRYAG 2 cut(s) 696, 1306
SmiMI CAYNNNNRTG 4 cut(s) 107, 1013, 1074, 1080
Sse9I AATT 8 cut(s) 67, 320, 382, 420, 551, 666, 729, 982
SsiI CCGC 2 cut(s) 436, 461
SspI AATATT 2 cut(s) 404, 1195
SspMI CTAG 2 cut(s) 35, 1257
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 4 cut(s) 683, 746, 938, 965
TaaI ACNGT 5 cut(s) 250, 538, 1130, 1310, 1319
TaiI ACGT 1 cut(s) 1056
TaqII GACCGA 1 cut(s) 1253
TasI AATT 8 cut(s) 67, 320, 382, 420, 551, 666, 729, 982
TatI WGTACW 6 cut(s) 336, 390, 797, 888, 1041, 1167
TfiI GAWTC 4 cut(s) 524, 641, 703, 1391
Tru1I TTAA 5 cut(s) 324, 386, 554, 783, 921
Tru9I TTAA 5 cut(s) 324, 386, 554, 783, 921
TscAI CASTG 2 cut(s) 234, 1344
TseFI GTSAC 3 cut(s) 244, 538, 590
Tsp45I GTSAC 3 cut(s) 244, 538, 590
TspDTI ATGAA 6 cut(s) 185, 353, 564, 723, 846, 1098
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 2 cut(s) 234, 1344
Van91I CCANNNNNTGG 2 cut(s) 731, 994
XapI RAATTY 3 cut(s) 67, 320, 382
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 2 cut(s) 35, 1257
ZrmI AGTACT 3 cut(s) 338, 799, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.