Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Reverse (-)

23086118 .. 23086853

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG146700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGACTCCTCCTGAAGTTGGGCCAGACGTCCCTTACACATTTGGTCTCATACGGGATCTGGGTCAGACCTTTGATTCAAACAAGACGCTAACTCATTATGAGCTAAATCCACTGAAAGAAGAGACAATTTTATTTGTTGGTGACCTCTCCTATGCGGATGACTACCCAAATCATGATAATGTCAGATGGGATACATGGGGAAGATTCACAGAGCGAAGTGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

75

Amino Acids

8.64

Weight (kDa)

4.43

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	50, 116
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	50, 116
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	2 cut(s)	50, 116
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	172
BspPI	GGATC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	50
BssMI	GATC	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	50, 116
BstMBI	GATC	1 cut(s)	55
BstPI	GGTNACC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	110
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	94
CviAII	CATG	2 cut(s)	173, 195
CviJI	RGCY	2 cut(s)	22, 103
CviKI_1	RGCY	2 cut(s)	22, 103
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
FaeI	CATG	2 cut(s)	176, 198
FaiI	YATR	5 cut(s)	50, 99, 153, 174, 196
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	2 cut(s)	172, 194
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	22
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	176, 198
HinfI	GANTC	3 cut(s)	4, 74, 204
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	66, 185
Hpy188III	TCNNGA	2 cut(s)	11, 173
HpyCH4IV	ACGT	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	176, 198
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	3 cut(s)	24, 36, 44
Lsp1109I	GCAGC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	131, 213
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	2 cut(s)	18, 155
MslI	CAYNNNNRTG	1 cut(s)	177
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	176, 198
NmuCI	GTSAC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	74, 204
PkrI	GCNGC	1 cut(s)	223
PspEI	GGTNACC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	177
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	20
SetI	ASST	4 cut(s)	30, 71, 105, 147
SgeI	CNNG	7 cut(s)	23, 35, 65, 71, 94, 185, 207
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	155
TaiI	ACGT	1 cut(s)	30
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	74, 204
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	140
TspRI	CASTG	1 cut(s)	117
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.