Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Reverse (-)

35336426 .. 35351830

Gene Structure 15405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1221800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGAAAGATGGCTGTTGTTGTAGTTTTGGCTATGGTTTTAAGCTTGACTGTGGTGTGTAATGGAGGTGTAACGAGCACTTTTGTAAGGAAAGTTGAGAGTACTGTCGATATGCCTCTGAAAGTGATGTCTTCCAAATCGCTCCAGGTTCATATAACACAAGGAAATCAGAAGGGAACGGCAATGATTGTGTCATGGGTCACTATGGCTGAACCAGGTTCTAGTGTAGTAATTTTTTGGAGCGAAAAACATAAGCCAAAGAAGGCTGAGGGCAAAGCCAAACAATATAAATTCTACGATTACACTTCTGGTTACATTCACCACTGCAACATCAGAGGATTAGAGTTTTGGTTTGTAACTCCTCCTGAAGCTGGGCCAGATGTCCCTTACACATTCGGTCTCATGGGGGATTTAGGTCAAACCTTTGATTCAAACAAGACACTTGCTCATTACGAAGCAAATCCAAGGAAAGGGCAAACGGTTTTGTTTCTTGGGGACTTGTCTTATGCAGATAACCACCCAAATCATGACCAGGTTAAATGGGATACATTTGAAAGGTTTATTGAGAGAAGTGCTGCTTATCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

197

Amino Acids

22.01

Weight (kDa)

8.77

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	49 - 115	4.5e-12	Purple acid Phosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	371, 470
AgsI	TTSAA	2 cut(s)	432, 554
AjnI	CCWGG	3 cut(s)	144, 214, 531
AluBI	AGCT	2 cut(s)	45, 371
AluI	AGCT	2 cut(s)	45, 371
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	3 cut(s)	146, 216, 533
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
BmcAI	AGTACT	1 cut(s)	103
Bme1390I	CCNGG	3 cut(s)	146, 216, 533
BmgT120I	GGNCC	1 cut(s)	374
BmrFI	CCNGG	3 cut(s)	146, 216, 533
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 470
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	3 cut(s)	146, 216, 533
BseDI	CCNNGG	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	371, 470
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	80
BslFI	GGGAC	2 cut(s)	368, 509
BslI	CCNNNNNNNGG	2 cut(s)	371, 470
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	2 cut(s)	368, 509
BsnI	GGCC	1 cut(s)	376
Bso31I	GGTCTC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	526
BspTNI	GGTCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	146, 216, 533
Bst4CI	ACNGT	3 cut(s)	52, 106, 481
BstDEI	CTNAG	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	404
BstNI	CCWGG	3 cut(s)	146, 216, 533
BstSCI	CCNGG	3 cut(s)	144, 214, 531
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	374
CsiI	ACCWGGT	2 cut(s)	214, 531
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	3 cut(s)	195, 403, 527
CviJI	RGCY	9 cut(s)	14, 32, 45, 209, 256, 266, 278, 371, 376
CviKI_1	RGCY	9 cut(s)	14, 32, 45, 209, 256, 266, 278, 371, 376
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	3 cut(s)	144, 214, 531
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	3 cut(s)	198, 406, 530
FalI	AAGNNNNNCTT	1 cut(s)	562
FaqI	GGGAC	2 cut(s)	368, 509
FatI	CATG	3 cut(s)	194, 402, 526
Fnu4HI	GCNGC	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	576
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	198, 406, 530
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	120, 171, 335
Hpy188III	TCNNGA	2 cut(s)	365, 527
HpyAV	CCTTC	2 cut(s)	166, 256
HpyCH4III	ACNGT	3 cut(s)	52, 106, 481
HpyCH4V	TGCA	2 cut(s)	327, 509
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	198, 406, 530
LmnI	GCTCC	2 cut(s)	147, 240
Lsp1109I	GCAGC	1 cut(s)	562
MabI	ACCWGGT	2 cut(s)	214, 531
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	4 cut(s)	70, 199, 311, 355
MboII	GAAGA	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	2 cut(s)	231, 290
MnlI	CCTC	5 cut(s)	59, 126, 262, 329, 372
MseI	TTAA	2 cut(s)	41, 537
MspR9I	CCNGG	3 cut(s)	146, 216, 533
MvaI	CCWGG	3 cut(s)	146, 216, 533
NlaIII	CATG	3 cut(s)	198, 406, 530
NmuCI	GTSAC	1 cut(s)	199
PagI	TCATGA	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	577
Psp6I	CCWGG	3 cut(s)	144, 214, 531
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	3 cut(s)	144, 214, 531
PspPI	GGNCC	1 cut(s)	374
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	41, 537
SatI	GCNGC	1 cut(s)	576
Sau96I	GGNCC	1 cut(s)	374
ScaI	AGTACT	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	146, 216, 533
SduI	GDGCHC	1 cut(s)	80
SexAI	ACCWGGT	2 cut(s)	214, 531
Sse9I	AATT	2 cut(s)	231, 290
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	144, 214, 531
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	52, 106, 481
TaqI	TCGA	1 cut(s)	108
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	231, 290
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	41, 537
Tru9I	TTAA	2 cut(s)	41, 537
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.