Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003605.1

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Reverse (-)

34283 .. 38167

Gene Structure 3885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003605.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgcctcttgacagtgacgtgtttaaaatccctccaggctataatgcacctcaacaggttcatataacgcaaggggaccgtcacgggaaggctgtgattgtgtcatgggtgactgtagatgaaccaggttccagtaccgtgctttactggagcacaaatgggaagcaaaagaaggctgagggaaaagttaagacctataaattctacaattacacttccggggatctgggtcagacctttgattcaaacaagacgctaactcattacgagctaaatccactgaaaggagagacaattttatttgttggcgacctctcctatgcggatgactacccaaatcatgataatgtcagatgggatacatggggaagattcacagagcgaagtgctgcttatcaaccttggatatggactgcagggaatcatgaaattgattttgccccagaaattggtgaaaccaaaccttttaaaccttacactcaccggtatcatgtcccacataaagcatcagggagtactgcccctttttggtactcaatcaagagagcttcgtcccacatcatcgtcttagcttcatattcagcatatggtaaatacactcctcagtacgaatggctcgagcaggagctatcaaaagttaatagaagtgagacaccatggttgattgtcttaatgcattccccattgtataatagctacatctatcactatatggaaggagaaagcatgagattgatgtttgagccgtggtttgtacagtacaaagttgacgtggtattttctggtcatgtccatgcctatgaacgatctgaacgcatatccaatgttgcatataacattacaaatggtaattgcattcctgtgaaagatcaatctgcacctgtgtacattaccattggggatggaggaaatcttgaaggcttagcaacctccatgacagagccacagccagagtactcggcctatcgagaggccagttttggtcatgccatttttgacatcaagaaccgaagccatgcttactttagttggcaccgtaatcaagatggatatgctgtagaagctgattctatggtgttcttcaatagatactttcatcctcttgataattccacaagtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

374

Amino Acids

42.98

Weight (kDa)

6.09

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1032
AccB7I	CCANNNNNTGG	1 cut(s)	449
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	8 cut(s)	136, 517, 533, 608, 756, 761, 887, 956
AfiI	CCNNNNNNNGG	3 cut(s)	284, 449, 528
AflIII	ACRYGT	1 cut(s)	18
AgeI	ACCGGT	1 cut(s)	483
AgsI	TTSAA	3 cut(s)	246, 917, 1084
AjiI	CACGTC	2 cut(s)	19, 772
AjnI	CCWGG	2 cut(s)	34, 124
AluBI	AGCT	6 cut(s)	271, 548, 572, 628, 696, 1064
AluI	AGCT	6 cut(s)	271, 548, 572, 628, 696, 1064
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	284, 644
AlwI	GGATC	1 cut(s)	231
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	2 cut(s)	960, 972
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	121, 464, 473
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	1032
Bbv12I	GWGCWC	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	3 cut(s)	348, 896, 1040
BceAI	ACGGC	1 cut(s)	730
BciT130I	CCWGG	2 cut(s)	36, 126
BciVI	GTATCC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	284, 644
BfmI	CTRYAG	3 cut(s)	114, 414, 1056
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	390
BlpI	GCTNAGC	1 cut(s)	922
BlsI	GCNGC	1 cut(s)	391
BmcAI	AGTACT	2 cut(s)	517, 956
Bme1390I	CCNGG	3 cut(s)	36, 126, 220
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	617
BmgBI	CACGTC	2 cut(s)	19, 772
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	3 cut(s)	77, 130, 1034
BmrFI	CCNGG	3 cut(s)	36, 126, 220
BmsI	GCATC	1 cut(s)	515
BpmI	CTGGAG	2 cut(s)	18, 169
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	922
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	219, 401, 656, 746
BsaWI	WCCGGW	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 449, 528
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	3 cut(s)	132, 152, 975
BseBI	CCWGG	2 cut(s)	36, 126
BseDI	CCNNGG	4 cut(s)	219, 401, 656, 746
BseGI	GGATG	3 cut(s)	331, 907, 1096
BseLI	CCNNNNNNNGG	3 cut(s)	284, 449, 528
BseMII	CTCAG	2 cut(s)	168, 617
BseNI	ACTGG	3 cut(s)	132, 152, 975
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	861
BshFI	GGCC	2 cut(s)	962, 974
BshNI	GGYRCC	1 cut(s)	1032
BshTI	ACCGGT	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	2 cut(s)	219, 484
BslFI	GGGAC	3 cut(s)	89, 479, 538
BslI	CCNNNNNNNGG	3 cut(s)	284, 449, 528
BsmAI	GTCTC	2 cut(s)	284, 644
BsmFI	GGGAC	3 cut(s)	89, 479, 538
BsmI	GAATGC	2 cut(s)	676, 855
BsnI	GGCC	2 cut(s)	962, 974
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp1407I	TGTACA	2 cut(s)	754, 885
Bsp143I	GATC	3 cut(s)	223, 806, 868
Bsp1720I	GCTNAGC	1 cut(s)	922
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	962, 974
BspCNI	CTCAG	2 cut(s)	169, 616
BspHI	TCATGA	2 cut(s)	340, 424
BspLI	GGNNCC	3 cut(s)	77, 130, 1034
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	1032
BsrFI	RCCGGY	1 cut(s)	483
BsrGI	TGTACA	2 cut(s)	754, 885
BsrI	ACTGG	3 cut(s)	132, 152, 975
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	4 cut(s)	219, 401, 656, 746
BssMI	GATC	3 cut(s)	223, 806, 868
BssT1I	CCWWGG	2 cut(s)	401, 656
Bst2UI	CCWGG	2 cut(s)	36, 126
Bst4CI	ACNGT	6 cut(s)	14, 80, 115, 139, 759, 1037
BstAUI	TGTACA	2 cut(s)	754, 885
BstDEI	CTNAG	4 cut(s)	177, 568, 603, 922
BstDSI	CCRYGG	2 cut(s)	656, 746
BstF5I	GGATG	3 cut(s)	331, 907, 1096
BstKTI	GATC	3 cut(s)	226, 809, 871
BstMAI	GTCTC	2 cut(s)	284, 644
BstMBI	GATC	3 cut(s)	223, 806, 868
BstMWI	GCNNNNNNNGC	1 cut(s)	1061
BstNI	CCWGG	2 cut(s)	36, 126
BstSCI	CCNGG	3 cut(s)	34, 124, 218
BstSFI	CTRYAG	3 cut(s)	114, 414, 1056
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	962, 974
BtgI	CCRYGG	2 cut(s)	656, 746
BtrI	CACGTC	2 cut(s)	19, 772
BtsCI	GGATG	3 cut(s)	331, 907, 1096
BtsIMutI	CAGTG	2 cut(s)	19, 278
CciI	TCATGA	2 cut(s)	340, 424
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	262
CsiI	ACCWGGT	1 cut(s)	124
Csp6I	GTAC	8 cut(s)	135, 516, 532, 607, 755, 760, 886, 955
CspAI	ACCGGT	1 cut(s)	483
CviQI	GTAC	8 cut(s)	135, 516, 532, 607, 755, 760, 886, 955
DdeI	CTNAG	4 cut(s)	177, 568, 603, 922
DpnI	GATC	3 cut(s)	225, 808, 870
DpnII	GATC	3 cut(s)	223, 806, 868
DraI	TTTAAA	2 cut(s)	25, 469
Eco130I	CCWWGG	2 cut(s)	401, 656
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	34, 124
EcoT14I	CCWWGG	2 cut(s)	401, 656
EcoT22I	ATGCAT	1 cut(s)	678
ErhI	CCWWGG	2 cut(s)	401, 656
FalI	AAGNNNNNCTT	4 cut(s)	376, 408, 1003, 1035
FaqI	GGGAC	3 cut(s)	89, 479, 538
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	3 cut(s)	338, 914, 1083
Fsp4HI	GCNGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	2 cut(s)	18, 169
HaeIII	GGCC	2 cut(s)	962, 974
HapII	CCGG	2 cut(s)	219, 484
HgaI	GACGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	4 cut(s)	242, 372, 421, 1067
HpaII	CCGG	2 cut(s)	219, 484
HphI	GGTGA	3 cut(s)	121, 464, 473
Hpy166II	GTNNAC	2 cut(s)	769, 886
Hpy188I	TCNGA	3 cut(s)	234, 353, 811
Hpy188III	TCNNGA	9 cut(s)	8, 341, 425, 541, 914, 968, 1003, 1043, 1103
Hpy8I	GTNNAC	2 cut(s)	769, 886
HpyAV	CCTTC	4 cut(s)	82, 166, 710, 911
HpyCH4III	ACNGT	6 cut(s)	14, 80, 115, 139, 759, 1037
HpyCH4IV	ACGT	2 cut(s)	18, 771
HpyCH4V	TGCA	6 cut(s)	47, 416, 676, 830, 855, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1061
HpyF3I	CTNAG	4 cut(s)	177, 568, 603, 922
HpySE526I	ACGT	2 cut(s)	18, 771
Kzo9I	GATC	3 cut(s)	223, 806, 868
LmnI	GCTCC	2 cut(s)	150, 625
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	515
MabI	ACCWGGT	1 cut(s)	124
MaeII	ACGT	2 cut(s)	18, 771
MaeIII	GTNAC	3 cut(s)	14, 80, 109
MalI	GATC	3 cut(s)	225, 808, 870
MboI	GATC	3 cut(s)	223, 806, 868
MboII	GAAGA	2 cut(s)	381, 1072
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	7 cut(s)	200, 208, 294, 429, 447, 850, 1108
Mph1103I	ATGCAT	1 cut(s)	678
MseI	TTAA	5 cut(s)	24, 189, 468, 639, 671
MslI	CAYNNNNRTG	4 cut(s)	345, 792, 798, 860
MspI	CCGG	2 cut(s)	219, 484
MspR9I	CCNGG	3 cut(s)	36, 126, 220
Mva1269I	GAATGC	2 cut(s)	676, 855
MvaI	CCWGG	2 cut(s)	36, 126
MwoI	GCNNNNNNNGC	1 cut(s)	1061
NciI	CCSGG	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	656
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	3 cut(s)	223, 806, 868
NlaIV	GGNNCC	3 cut(s)	77, 130, 1034
NmeAIII	GCCGAG	1 cut(s)	938
NmuCI	GTSAC	3 cut(s)	14, 80, 109
NsiI	ATGCAT	1 cut(s)	678
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	2 cut(s)	340, 424
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PctI	GAATGC	2 cut(s)	676, 855
PfeI	GAWTC	4 cut(s)	242, 372, 421, 1067
PflMI	CCANNNNNTGG	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	483
PkrI	GCNGC	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	34, 124
PspGI	CCWGG	2 cut(s)	34, 124
PspN4I	GGNNCC	3 cut(s)	77, 130, 1034
PspPI	GGNCC	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	8 cut(s)	136, 517, 533, 608, 756, 761, 887, 956
RsaNI	GTAC	8 cut(s)	135, 516, 532, 607, 755, 760, 886, 955
RseI	CAYNNNNRTG	4 cut(s)	345, 792, 798, 860
SaqAI	TTAA	5 cut(s)	24, 189, 468, 639, 671
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	3 cut(s)	223, 806, 868
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	2 cut(s)	517, 956
ScrFI	CCNGG	3 cut(s)	36, 126, 220
SduI	GDGCHC	1 cut(s)	155
SexAI	ACCWGGT	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	515
SfcI	CTRYAG	3 cut(s)	114, 414, 1056
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	4 cut(s)	345, 792, 798, 860
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	7 cut(s)	200, 208, 294, 429, 447, 850, 1108
SsiI	CCGC	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	34, 124, 218
StyI	CCWWGG	2 cut(s)	401, 656
TaaI	ACNGT	6 cut(s)	14, 80, 115, 139, 759, 1037
TaiI	ACGT	2 cut(s)	21, 774
TaqI	TCGA	2 cut(s)	618, 967
TasI	AATT	7 cut(s)	200, 208, 294, 429, 447, 850, 1108
TatI	WGTACW	5 cut(s)	515, 754, 759, 885, 954
TfiI	GAWTC	4 cut(s)	242, 372, 421, 1067
Tru1I	TTAA	5 cut(s)	24, 189, 468, 639, 671
Tru9I	TTAA	5 cut(s)	24, 189, 468, 639, 671
TscAI	CASTG	2 cut(s)	19, 285
TseFI	GTSAC	3 cut(s)	14, 80, 109
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	3 cut(s)	14, 80, 109
TspDTI	ATGAA	6 cut(s)	50, 135, 441, 564, 816, 1085
TspRI	CASTG	2 cut(s)	19, 285
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	617
ZrmI	AGTACT	2 cut(s)	517, 956
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.