Rroxscaffold_7G00201560

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
49193047 .. 49197226
4180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201560.1

Sequence Viewer

Length: 1425 bp
ATGGGTGTAATGGGTTTTGCTTCTGCTTCAGTATTCTCTTCAAAGCTAGCTGCTTTTTTGGTTTTGGGTTTGGTTTTGAATTTGGGGTTGGTTTGTAACGGAGGAAAGACCAGCACTTTTGTCAGGAAAGTGGAGAAAACTGTGGATATGCCTCTAGAAAGCGATGTCTTCAAAGCCCCTCATGGCTATAATGCTCCAGAGCAAGTTCATATTACACAAGGAGACCAGCTGGGAAAGGCAGTGATTGTGTCATGGGTGACTGTGGATGAACCAGGTTCCAGCAAAGTGCTTTATTGGAGTGCAAATAGCAAGAAAAAGACAGCTGTGGGAAAATTTTACACCTATAAGTACTACAATTACAGCTCTCCTTACATTCACCATGCAACAATCAGAAATTTAGAGTACAATACCAAATATTACTATGAGGTTGGAATTGGACACACAAAGCGGCAGTTCTGGTTTGTAACTCCTCCAGCAGTTGGGCCAGATGTCCCTTACACATTTGGTCTCATAGGGGATCTTGGCCAGACCTTTGATTCAAATAAGACACTCACTCATTATGAATTAAATCCACAGAAAGGACAAACATTATTGTTTGTTGGTGACCTCTCTTATGCGGATAACTATCCCAATCATGATAATAACAGATGGGATTCATGGGGAAGATTCGTGGAGAGAAGTGTTGCTTATCAGCCTTGGATATGGACTGCAGGGAATCATGAACTTGATTTTGCTCCAGAAATTGGTGAAACCAAACCATATAAGCCTTACACTCACCGGTATCATGTCCCATATAAGGCATCAGGGAGTACTTCCCCTCTTTGGTACTCAATCAAGAGAGCTTCCTCACACATCATAGTCTTATCTTCATATTCTGCATATGGTAAATACACTCCTCAGTACAATTGGCTGGAGGAGGAGCTACCAAAAGTTAACAGGACTGAGACCCCATGGTTGATTGTGTTAGTGCATTCCCCATGGTACAATAGCTACAATTACCACTACATGGAAGGAGAGACCATGAGAGTGATGTTTGAGGCTTGGTTTGTGAAGTACAAAGTTGACGTGGTATTCGCTGGTCATGTCCATGCCTATGAACGATCTGAGCGTGTTTCCAACATTGCATACAACATTGTAAACGGTATTTGTTCTCCCGTGAAAGATCAATCTGCACCTGTGTACATCACCATTGGTGATGGAGGAAATATTGAAGGCTTAGCTAACAATATGACAGAACCACAGCCAGCGTACTCGGCTTATAGAGAGGCCAGTTTTGGTCATGCCACTTTTGACATCAAGAACAGAACCCATGCTTACTACAGTTGGCACCGTAACCAAGATGGATATGCAGTGGAAGCTGACTCTATGTGGTTTTTCAACAGATACTACCATCCCGTGGATGATTCTACAAGTGCCCAATCATGA

Protein Analysis

474

Amino Acids

54.17

Weight (kDa)

6.83

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 66 - 156 6.5e-18 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 167 - 365 1.5e-27 Calcineurin-like phosphoesterase
Metallophos_C PF14008 391 - 450 1.3e-20 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1326
AccB7I CCANNNNNTGG 4 cut(s) 479, 743, 1006, 1396
AciI CCGC 2 cut(s) 448, 617
AclWI GGATC 1 cut(s) 525
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 3 cut(s) 79, 332, 394
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 9 cut(s) 350, 404, 811, 827, 902, 983, 1055, 1181, 1250
AfiI CCNNNNNNNGG 7 cut(s) 479, 578, 743, 796, 822, 1006, 1396
AgeI ACCGGT 1 cut(s) 777
AgsI TTSAA 6 cut(s) 42, 79, 172, 540, 1211, 1378
AjiI CACGTC 1 cut(s) 1066
AjnI CCWGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
Alw26I GTCTC 4 cut(s) 216, 512, 938, 1010
AlwI GGATC 1 cut(s) 525
AoxI GGCC 3 cut(s) 482, 523, 1266
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 3 cut(s) 79, 332, 394
ArsI GACNNNNNNTTYG 2 cut(s) 1055, 1087
AsiGI ACCGGT 1 cut(s) 777
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 7 cut(s) 268, 368, 614, 758, 767, 1177, 1205
AsuNHI GCTAGC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 1417
BalI TGGCCA 1 cut(s) 525
BanI GGYRCC 1 cut(s) 1326
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 37
BccI CCATC 4 cut(s) 642, 1190, 1334, 1398
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 4 cut(s) 216, 512, 938, 1010
BfaI CTAG 2 cut(s) 47, 155
BfmI CTRYAG 2 cut(s) 708, 1318
BisI GCNGC 2 cut(s) 51, 449
BlpI GCTNAGC 1 cut(s) 1216
BlsI GCNGC 2 cut(s) 52, 450
BmcAI AGTACT 2 cut(s) 350, 811
Bme1390I CCNGG 1 cut(s) 273
BmgBI CACGTC 1 cut(s) 1066
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 2 cut(s) 277, 1328
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 809
BmtI GCTAGC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 160
BpmI CTGGAG 4 cut(s) 180, 456, 720, 932
Bpu1102I GCTNAGC 1 cut(s) 1216
BsaBI GATNNNNATC 1 cut(s) 624
BsaI GGTCTC 4 cut(s) 216, 512, 938, 1010
BsaJI CCNNGG 4 cut(s) 695, 950, 977, 1395
BsaWI WCCGGW 1 cut(s) 777
Bsc4I CCNNNNNNNGG 7 cut(s) 479, 578, 743, 796, 822, 1006, 1396
Bse118I RCCGGY 1 cut(s) 777
Bse1I ACTGG 1 cut(s) 1269
Bse3DI GCAATG 1 cut(s) 1119
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 4 cut(s) 695, 950, 977, 1395
BseGI GGATG 3 cut(s) 271, 1390, 1405
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 7 cut(s) 479, 578, 743, 796, 822, 1006, 1396
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 3 cut(s) 911, 933, 1095
BseNI ACTGG 1 cut(s) 1269
BseRI GAGGAG 4 cut(s) 459, 885, 929, 932
BseSI GKGCMC 1 cut(s) 1417
BseXI GCAGC 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 1155
BshFI GGCC 3 cut(s) 484, 525, 1268
BshNI GGYRCC 1 cut(s) 1326
BshTI ACCGGT 1 cut(s) 777
BsiSI CCGG 1 cut(s) 778
BslFI GGGAC 2 cut(s) 476, 773
BslI CCNNNNNNNGG 7 cut(s) 479, 578, 743, 796, 822, 1006, 1396
BsmAI GTCTC 4 cut(s) 216, 512, 938, 1010
BsmFI GGGAC 2 cut(s) 476, 773
BsmI GAATGC 1 cut(s) 970
BsnI GGCC 3 cut(s) 484, 525, 1268
Bso31I GGTCTC 4 cut(s) 216, 512, 938, 1010
Bsp1286I GDGCHC 1 cut(s) 1417
Bsp1407I TGTACA 1 cut(s) 1179
Bsp143I GATC 3 cut(s) 517, 1100, 1162
Bsp1720I GCTNAGC 1 cut(s) 1216
Bsp19I CCATGG 2 cut(s) 950, 977
BspACI CCGC 2 cut(s) 448, 617
BspANI GGCC 3 cut(s) 484, 525, 1268
BspCNI CTCAG 3 cut(s) 910, 934, 1096
BspHI TCATGA 3 cut(s) 634, 718, 1421
BspLI GGNNCC 2 cut(s) 277, 1328
BspMAI CTGCAG 1 cut(s) 712
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 1326
BspTNI GGTCTC 4 cut(s) 216, 512, 938, 1010
BsrDI GCAATG 1 cut(s) 1119
BsrFI RCCGGY 1 cut(s) 777
BsrGI TGTACA 1 cut(s) 1179
BsrI ACTGG 1 cut(s) 1269
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 4 cut(s) 695, 950, 977, 1395
BssMI GATC 3 cut(s) 517, 1100, 1162
BssT1I CCWWGG 3 cut(s) 695, 950, 977
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 5 cut(s) 142, 262, 1142, 1322, 1331
Bst6I CTCTTC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 1179
BstC8I GCNNGC 2 cut(s) 48, 1245
BstDEI CTNAG 4 cut(s) 897, 942, 1104, 1216
BstDSI CCRYGG 3 cut(s) 950, 977, 1395
BstEII GGTNACC 1 cut(s) 602
BstF5I GGATG 3 cut(s) 271, 1390, 1405
BstKTI GATC 3 cut(s) 520, 1103, 1165
BstMAI GTCTC 4 cut(s) 216, 512, 938, 1010
BstMBI GATC 3 cut(s) 517, 1100, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 1253, 1355
BstNI CCWGG 1 cut(s) 273
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 2 cut(s) 708, 1318
BstSLI GKGCMC 1 cut(s) 1417
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 3 cut(s) 484, 525, 1268
BtgI CCRYGG 3 cut(s) 950, 977, 1395
BtgZI GCGATG 1 cut(s) 177
BtrI CACGTC 1 cut(s) 1066
BtsCI GGATG 3 cut(s) 271, 1390, 1405
BtsI GCAGTG 2 cut(s) 246, 1356
BtsIMutI CAGTG 2 cut(s) 246, 1356
Cac8I GCNNGC 2 cut(s) 48, 1245
CciI TCATGA 3 cut(s) 634, 718, 1421
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 1 cut(s) 482
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 9 cut(s) 349, 403, 810, 826, 901, 982, 1054, 1180, 1249
CspAI ACCGGT 1 cut(s) 777
CviQI GTAC 9 cut(s) 349, 403, 810, 826, 901, 982, 1054, 1180, 1249
DdeI CTNAG 4 cut(s) 897, 942, 1104, 1216
DpnI GATC 3 cut(s) 519, 1102, 1164
DpnII GATC 3 cut(s) 517, 1100, 1162
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 695, 950, 977
Eco31I GGTCTC 4 cut(s) 216, 512, 938, 1010
Eco57I CTGAAG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 3 cut(s) 695, 950, 977
ErhI CCWWGG 3 cut(s) 695, 950, 977
FalI AAGNNNNNCTT 2 cut(s) 670, 702
FaqI GGGAC 2 cut(s) 476, 773
FauNDI CATATG 1 cut(s) 880
Fnu4HI GCNGC 2 cut(s) 51, 449
FokI GGATG 3 cut(s) 278, 1377, 1412
Fsp4HI GCNGC 2 cut(s) 51, 449
FspBI CTAG 2 cut(s) 47, 155
GluI GCNGC 2 cut(s) 51, 449
GsaI CCCAGC 1 cut(s) 233
GsuI CTGGAG 4 cut(s) 180, 456, 720, 932
HaeIII GGCC 3 cut(s) 484, 525, 1268
HapII CCGG 1 cut(s) 778
HincII GTYRAC 2 cut(s) 934, 1063
HindII GTYRAC 2 cut(s) 934, 1063
HinfI GANTC 6 cut(s) 536, 653, 666, 715, 1361, 1403
HpaI GTTAAC 1 cut(s) 934
HpaII CCGG 1 cut(s) 778
HphI GGTGA 7 cut(s) 268, 368, 614, 758, 767, 1177, 1205
Hpy166II GTNNAC 4 cut(s) 934, 1063, 1138, 1180
Hpy188I TCNGA 2 cut(s) 392, 1105
Hpy188III TCNNGA 9 cut(s) 124, 155, 197, 635, 719, 737, 835, 1297, 1422
Hpy8I GTNNAC 4 cut(s) 934, 1063, 1138, 1180
HpyAV CCTTC 2 cut(s) 1004, 1205
HpyCH4III ACNGT 5 cut(s) 142, 262, 1142, 1322, 1331
HpyCH4IV ACGT 1 cut(s) 1065
HpyCH4V TGCA 8 cut(s) 302, 383, 710, 878, 970, 1124, 1172, 1349
HpyF10VI GCNNNNNNNGC 2 cut(s) 1253, 1355
HpyF3I CTNAG 4 cut(s) 897, 942, 1104, 1216
HpySE526I ACGT 1 cut(s) 1065
KspAI GTTAAC 1 cut(s) 934
Kzo9I GATC 3 cut(s) 517, 1100, 1162
LmnI GCTCC 3 cut(s) 199, 739, 919
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 809
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 2 cut(s) 47, 155
MaeII ACGT 1 cut(s) 1065
MaeIII GTNAC 5 cut(s) 95, 256, 463, 602, 1331
MalI GATC 3 cut(s) 519, 1102, 1164
MboI GATC 3 cut(s) 517, 1100, 1162
MboII GAAGA 4 cut(s) 30, 160, 675, 858
MfeI CAATTG 1 cut(s) 904
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 1417
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 9 cut(s) 79, 332, 355, 394, 432, 563, 741, 904, 994
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 1 cut(s) 1355
MmeI TCCRAC 2 cut(s) 409, 1140
Mox20I TGGCCA 1 cut(s) 525
MscI TGGCCA 1 cut(s) 525
MseI TTAA 2 cut(s) 566, 933
MslI CAYNNNNRTG 3 cut(s) 1025, 1086, 1092
Msp20I TGGCCA 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 229, 323
MspI CCGG 1 cut(s) 778
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 904
Mva1269I GAATGC 1 cut(s) 970
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 1253, 1355
NcoI CCATGG 2 cut(s) 950, 977
NdeI CATATG 1 cut(s) 880
NdeII GATC 3 cut(s) 517, 1100, 1162
NheI GCTAGC 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 277, 1328
NmeAIII GCCGAG 1 cut(s) 1232
NmuCI GTSAC 2 cut(s) 256, 602
PagI TCATGA 3 cut(s) 634, 718, 1421
PcsI WCGNNNNNNNCGW 1 cut(s) 1105
PctI GAATGC 1 cut(s) 970
PfeI GAWTC 5 cut(s) 536, 653, 666, 715, 1403
PflMI CCANNNNNTGG 4 cut(s) 479, 743, 1006, 1396
PinAI ACCGGT 1 cut(s) 777
PkrI GCNGC 2 cut(s) 52, 450
PleI GAGTC 1 cut(s) 1355
PpsI GAGTC 1 cut(s) 1355
Psp6I CCWGG 1 cut(s) 271
PspEI GGTNACC 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 277, 1328
PspPI GGNCC 1 cut(s) 482
PstI CTGCAG 1 cut(s) 712
PsuI RGATCY 1 cut(s) 517
PvuII CAGCTG 2 cut(s) 229, 323
RsaI GTAC 9 cut(s) 350, 404, 811, 827, 902, 983, 1055, 1181, 1250
RsaNI GTAC 9 cut(s) 349, 403, 810, 826, 901, 982, 1054, 1180, 1249
RseI CAYNNNNRTG 3 cut(s) 1025, 1086, 1092
SaqAI TTAA 2 cut(s) 566, 933
SatI GCNGC 2 cut(s) 51, 449
Sau3AI GATC 3 cut(s) 517, 1100, 1162
Sau96I GGNCC 1 cut(s) 482
ScaI AGTACT 2 cut(s) 350, 811
SchI GAGTC 1 cut(s) 1355
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 1417
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 1 cut(s) 809
SfcI CTRYAG 2 cut(s) 708, 1318
SmiMI CAYNNNNRTG 3 cut(s) 1025, 1086, 1092
Sse9I AATT 9 cut(s) 79, 332, 355, 394, 432, 563, 741, 904, 994
SsiI CCGC 2 cut(s) 448, 617
SspI AATATT 2 cut(s) 416, 1207
SspMI CTAG 2 cut(s) 47, 155
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 3 cut(s) 695, 950, 977
TaaI ACNGT 5 cut(s) 142, 262, 1142, 1322, 1331
TaiI ACGT 1 cut(s) 1068
TasI AATT 9 cut(s) 79, 332, 355, 394, 432, 563, 741, 904, 994
TatI WGTACW 6 cut(s) 348, 402, 809, 900, 1053, 1179
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 5 cut(s) 536, 653, 666, 715, 1403
Tru1I TTAA 2 cut(s) 566, 933
Tru9I TTAA 2 cut(s) 566, 933
TscAI CASTG 2 cut(s) 246, 1356
TseFI GTSAC 2 cut(s) 256, 602
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 2 cut(s) 256, 602
TspDTI ATGAA 7 cut(s) 197, 282, 576, 645, 735, 858, 1110
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 246, 1356
Van91I CCANNNNNTGG 4 cut(s) 479, 743, 1006, 1396
XapI RAATTY 3 cut(s) 79, 332, 394
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 2 cut(s) 47, 155
ZrmI AGTACT 2 cut(s) 350, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.