Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Forward (+)

10327451 .. 10328994

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1059100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCATCATAGAGTGACGTGGCTACTTAGATTTGGTTCAACTTTTGGAATTGGGATTGAAAGAAAATTCTATGATTCAAATAAGATGCTTATTCATTACGAGTTCAACCCGCAGAAAGGGCAAGCAGTATTGTTTGTTGGGGACCTCTCTTATGCAGATAACTACCCAAATCATGACAATGTCAGGTGGGATACTTGGGGAAAATTCGCCGAGAGAATAGTTGCTTATCAACCTTGGATATGGACTGCAGGAAACCATGAAATCGATTTTGCCCCAGAAATCGGTGAAACCAAACCTTTTAAGCCTTATAGTCACCGGTATCATGTCCCATATGAAGTATCTGGGATACGAATGGCTCAAGGAGGAACTACCGAAGGTTATAATAGGAGTGAGACACCATGGTTGATTGGTTTAATGCATTCCCCATGGTATAACAGCTACAACTATCACTATATGGAAGGAGAAACCATGAGTGATGTATGGCCATGGTTTGTGACGTACAAAGTCGACGTGTACGGTATTTGCTGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

178

Amino Acids

21.05

Weight (kDa)

6.11

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	29 - 172	3.7e-13	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	65, 203
AfaI	GTAC	2 cut(s)	500, 515
AfiI	CCNNNNNNNGG	2 cut(s)	116, 281
AflIII	ACRYGT	1 cut(s)	510
AgeI	ACCGGT	1 cut(s)	315
AgsI	TTSAA	4 cut(s)	39, 59, 78, 106
AjiI	CACGTC	2 cut(s)	18, 511
AluBI	AGCT	1 cut(s)	438
AluI	AGCT	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	386
AoxI	GGCC	1 cut(s)	482
ApoI	RAATTY	2 cut(s)	65, 203
AsiGI	ACCGGT	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	296, 305
AvaII	GGWCC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	484
BciVI	GTATCC	2 cut(s)	184, 339
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	532
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	2 cut(s)	184, 339
Bme18I	GGWCC	1 cut(s)	142
BmgBI	CACGTC	2 cut(s)	18, 511
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	143
BmsI	GCATC	2 cut(s)	13, 75
BpuEI	CTTGAG	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	233, 398, 425, 485
BsaWI	WCCGGW	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 281
Bse118I	RCCGGY	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	4 cut(s)	233, 398, 425, 485
BseLI	CCNNNNNNNGG	2 cut(s)	116, 281
BshFI	GGCC	1 cut(s)	484
BshTI	ACCGGT	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	2 cut(s)	155, 311
BslI	CCNNNNNNNGG	2 cut(s)	116, 281
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	2 cut(s)	155, 311
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	484
Bsp19I	CCATGG	3 cut(s)	398, 425, 485
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	4 cut(s)	233, 398, 425, 485
BssT1I	CCWWGG	4 cut(s)	233, 398, 425, 485
Bst4CI	ACNGT	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	3 cut(s)	398, 425, 485
BstMAI	GTCTC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	264
BsuI	GTATCC	2 cut(s)	184, 339
BsuRI	GGCC	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	3 cut(s)	398, 425, 485
BtrI	CACGTC	2 cut(s)	18, 511
Cac8I	GCNNGC	1 cut(s)	123
CciI	TCATGA	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	142
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	499, 514
CspAI	ACCGGT	1 cut(s)	315
CviAII	CATG	7 cut(s)	173, 257, 323, 399, 426, 469, 486
CviJI	RGCY	5 cut(s)	22, 304, 356, 438, 484
CviKI_1	RGCY	5 cut(s)	22, 304, 356, 438, 484
CviQI	GTAC	2 cut(s)	499, 514
DdeI	CTNAG	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	482
Eco130I	CCWWGG	4 cut(s)	233, 398, 425, 485
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	4 cut(s)	233, 398, 425, 485
EcoT22I	ATGCAT	2 cut(s)	6, 420
ErhI	CCWWGG	4 cut(s)	233, 398, 425, 485
FaeI	CATG	7 cut(s)	176, 260, 326, 402, 429, 472, 489
FaqI	GGGAC	2 cut(s)	155, 311
FatI	CATG	7 cut(s)	172, 256, 322, 398, 425, 468, 485
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	532
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	7 cut(s)	176, 260, 326, 402, 429, 472, 489
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	2 cut(s)	296, 305
Hpy166II	GTNNAC	2 cut(s)	508, 514
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	508, 514
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	2 cut(s)	368, 452
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	3 cut(s)	17, 497, 510
HpyCH4V	TGCA	4 cut(s)	4, 155, 248, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	3 cut(s)	17, 497, 510
Hsp92II	CATG	7 cut(s)	176, 260, 326, 402, 429, 472, 489
LpnPI	CCDG	6 cut(s)	169, 234, 288, 327, 329, 511
LweI	GCATC	2 cut(s)	13, 75
MaeI	CTAG	1 cut(s)	532
MaeII	ACGT	3 cut(s)	17, 497, 510
MaeIII	GTNAC	3 cut(s)	13, 311, 493
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	3 cut(s)	48, 65, 203
MluNI	TGGCCA	1 cut(s)	484
MnlI	CCTC	2 cut(s)	155, 356
Mox20I	TGGCCA	1 cut(s)	484
Mph1103I	ATGCAT	2 cut(s)	6, 420
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	2 cut(s)	300, 413
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	484
MspI	CCGG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	118
NcoI	CCATGG	3 cut(s)	398, 425, 485
NdeI	CATATG	1 cut(s)	331
NlaIII	CATG	7 cut(s)	176, 260, 326, 402, 429, 472, 489
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	3 cut(s)	13, 311, 493
NsiI	ATGCAT	2 cut(s)	6, 420
PagI	TCATGA	1 cut(s)	172
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	500, 515
RsaNI	GTAC	2 cut(s)	499, 514
RseI	CAYNNNNRTG	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	300, 413
Sau96I	GGNCC	1 cut(s)	142
SetI	ASST	9 cut(s)	20, 147, 188, 235, 298, 379, 440, 500, 513
SfaNI	GCATC	2 cut(s)	13, 75
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	3 cut(s)	48, 65, 203
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	532
StyI	CCWWGG	4 cut(s)	233, 398, 425, 485
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	3 cut(s)	20, 500, 513
TaqI	TCGA	2 cut(s)	264, 507
TasI	AATT	3 cut(s)	48, 65, 203
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	300, 413
Tru9I	TTAA	2 cut(s)	300, 413
TseFI	GTSAC	3 cut(s)	13, 311, 493
Tsp45I	GTSAC	3 cut(s)	13, 311, 493
TspDTI	ATGAA	3 cut(s)	83, 273, 348
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	2 cut(s)	65, 203
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	1 cut(s)	532
Zsp2I	ATGCAT	2 cut(s)	6, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.