Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Reverse (-)

23090891 .. 23092036

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23906

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTGTGTGTTCTTGTGTGAAGCTTCATATAACGCAAGGGGACCGTCACGGGAAGGCTGTGATGAACCAGGTTCCGGTACCGTGCTTTACTGGAGCACGAATGGGAAGCAAAAGAAGGCTGAGGGAAAAGTTAAATTCTACAATTACACTTCCTGTAACATTCACCACACCACCACCAAAAAATTAAAGTTCAATACCAAATATTACTATGTCGTTGGAGTCGACCACTCTGAGCGGCAGTTCTGGTTTATGACTCCTCCTGAAGTTGGGCCAGACGTCCCTTACACATTTGGTCTCATAGGGGATCCGGGTCAGGCCTTTGATTCAGACAAGACGCTAACTCATTATGAGCTAAATCCACTGAAAGGAGAGACAATTTTATTTGTTGGTGACCTCTCCTATGCGGATGACTACCCAAATCATGATAATGTCAGATGGGATACATGGGGAAGATTCACAGAGCGAAGTTCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

158

Amino Acids

18.05

Weight (kDa)

5.93

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	22 - 85	8.1e-07	Purple acid Phosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	2 cut(s)	235, 404
AclWI	GGATC	2 cut(s)	299, 312
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	74, 266, 365
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	2 cut(s)	23, 352
AluI	AGCT	2 cut(s)	23, 352
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	299, 365
AlwI	GGATC	2 cut(s)	299, 312
AoxI	GGCC	2 cut(s)	269, 315
ApoI	RAATTY	1 cut(s)	134
Asp718I	GGTACC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	41, 269
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	155, 401
AvaII	GGWCC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	98
BbvCI	CCTCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	299, 365
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	69, 309
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 269
BmiI	GGNNCC	4 cut(s)	42, 73, 79, 306
BmrFI	CCNGG	2 cut(s)	69, 309
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 266, 365
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	74, 266, 365
BseMII	CTCAG	2 cut(s)	111, 222
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	271, 317
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	75, 308
BslFI	GGGAC	2 cut(s)	54, 263
BslI	CCNNNNNNNGG	3 cut(s)	74, 266, 365
BsmAI	GTCTC	2 cut(s)	299, 365
BsmFI	GGGAC	2 cut(s)	54, 263
BsnI	GGCC	2 cut(s)	271, 317
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	2 cut(s)	235, 404
BspANI	GGCC	2 cut(s)	271, 317
BspCNI	CTCAG	2 cut(s)	112, 223
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	4 cut(s)	42, 73, 79, 306
BspPI	GGATC	2 cut(s)	299, 312
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	45, 82
BstACI	GRCGYC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	120, 231
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	2 cut(s)	299, 365
BstMBI	GATC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	67, 307
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	271, 317
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	41, 269
CseI	GACGC	1 cut(s)	343
CsiI	ACCWGGT	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	422, 444
CviJI	RGCY	6 cut(s)	23, 57, 119, 271, 317, 352
CviKI_1	RGCY	6 cut(s)	23, 57, 119, 271, 317, 352
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	120, 231
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	425, 447
FaiI	YATR	9 cut(s)	28, 30, 210, 251, 299, 348, 402, 423, 445
FaqI	GGGAC	2 cut(s)	54, 263
FatI	CATG	2 cut(s)	421, 443
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	271, 317
HapII	CCGG	2 cut(s)	75, 308
HgaI	GACGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	425, 447
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	4 cut(s)	219, 253, 323, 453
HpaII	CCGG	2 cut(s)	75, 308
HphI	GGTGA	2 cut(s)	155, 401
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	232, 328, 434
Hpy188III	TCNNGA	2 cut(s)	260, 422
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	47, 109
HpyCH4III	ACNGT	2 cut(s)	45, 82
HpyCH4IV	ACGT	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	120, 231
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	425, 447
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	93
MabI	ACCWGGT	1 cut(s)	67
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	45, 155, 389
MalI	GATC	1 cut(s)	306
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	462
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	4 cut(s)	134, 142, 182, 375
MlyI	GAGTC	2 cut(s)	228, 247
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	115, 267, 404
MseI	TTAA	2 cut(s)	132, 185
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	2 cut(s)	75, 308
MspR9I	CCNGG	2 cut(s)	69, 309
MvaI	CCWGG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	425, 447
NlaIV	GGNNCC	4 cut(s)	42, 73, 79, 306
NmuCI	GTSAC	2 cut(s)	45, 389
PagI	TCATGA	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	323, 453
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	2 cut(s)	227, 247
PpsI	GAGTC	2 cut(s)	227, 247
Psp6I	CCWGG	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	42, 73, 79, 306
PspPI	GGNCC	2 cut(s)	41, 269
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	132, 185
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	2 cut(s)	41, 269
SchI	GAGTC	2 cut(s)	228, 247
ScrFI	CCNGG	2 cut(s)	69, 309
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	5 cut(s)	25, 73, 279, 354, 396
SexAI	ACCWGGT	1 cut(s)	67
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	4 cut(s)	134, 142, 182, 375
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	2 cut(s)	235, 404
SspI	AATATT	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	67, 307
TaaI	ACNGT	2 cut(s)	45, 82
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	134, 142, 182, 375
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	323, 453
Tru1I	TTAA	2 cut(s)	132, 185
Tru9I	TTAA	2 cut(s)	132, 185
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	2 cut(s)	45, 389
Tsp45I	GTSAC	2 cut(s)	45, 389
TspDTI	ATGAA	2 cut(s)	15, 78
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.