Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Forward (+)

12226386 .. 12230536

Gene Structure 4151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G088900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGACCAAGATGGGTGTGGTGAGCTTAGCATCTGTTTCTACTTCTTCAAGGGTAGCTAGGTTGGTAGTTTTGGTTTTGAACTTGGCTGTGGTTTGCAATGGAGGTATAACAAGCCCTTTTGTGAGGAAAGCTGAGAAGACTGTTGATATGCCTTATGAAAGTGATGCCTTTCAAGTCCCTCATGGCTATAATGCACCTCAACAAGTTCATATAACACAAGGAGACCACAAGGGAAAGGCCATGATTGTGTCATGGGTCACTGTGGATGAAAAAGGCTCCAGCAAAGTGCTTTTCTGGAGTGAAGGTCAAAAGAAAAGGATGGCTGAAGGCAAAGCTAAAACCTATACATACCATGATTACACTTCTGGTTACATTCACCACTCTACCATCAGAAACTTAGAGTACAATACCAAATATTACTATATGGTAGGAATTGGGCACACTGAGAGGCTGTTCTGGTTTGTAACTCCTCCTGAAGTTGGGCCAGATGTCACTTATACATTTGGTCTCATGGGGGATTTGGGCCAAACCTTTGATTCAAACTTGACACTTATTCACTATGAAGAAAACCCACTTAAAGGACAAACAGTTTTGAACCTTGGAGACCTCTCTTATGCAGATAATCATCCCAATCATGACAATGTTAAGTGGGATACATTTGGAAGATTCATTGAGAGAAGTGCTGCTTATCAACCTTGGATTTGGACTGCAGGGAACCATGAGATTGATTATGCTCCAGAAATTGGTGAATACAAACCTTTCAAGCCATACACTCACCGGTATAATGTCCCACACAAAGCATCAGGGAGCCCTGCCCCTTTTTTTTACTCAATCAAGAGAGCTTCAGCATACATCATAGTCTTGTCTTCATATACAGCTTATGGTCAATACACTCCTCAGTACCAATGGCTTGAGCAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGTTGATTGTCTTACTGCATTCCCCATGGTACAACAGCTACAACTATCATTACATGGAAGGAGAGAGCATGAGAGTCATGTTTGAGTCATGGTTCGTGCAGCACAAGGTTGACGTAGTCTTTGCTGGTCATGTCCATGCCTACGAACGATCTGAACGTGTATCGAATATTGCCTATAACATTGAAAATGGAAAGTGCTCTCCGGTGGTGAAAGATCAATCTGCGCCAGTGTACATTACCATTGGAGATGGAGGAAATATTGAAGGCTTGGCAACCAATATGAGGGAGCCACAGCCAGATTACTCAGCTTATAGAGAGGCCAGTTTTGGTCATGCCATTTTCGACATCAAGAACCGAACTCATGCCTTCTACAGTTGGCACCGGAACGACGATGGAGTTGCAGTGAAAGCCGATTCTATGTGGTTTTTCAACAGATACCATCATCCTGTTGATGATTCTACAAGTTCCCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

476

Amino Acids

54.35

Weight (kDa)

6.44

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1329
AccB7I	CCANNNNNTGG	1 cut(s)	743
AcuI	CTGAAG	3 cut(s)	345, 495, 828
AfaI	GTAC	4 cut(s)	404, 902, 983, 1184
AfiI	CCNNNNNNNGG	4 cut(s)	479, 578, 743, 1233
AflIII	ACRYGT	1 cut(s)	1108
AgeI	ACCGGT	1 cut(s)	777
AgsI	TTSAA	9 cut(s)	48, 79, 173, 540, 595, 763, 1136, 1214, 1381
AluBI	AGCT	9 cut(s)	24, 56, 131, 335, 842, 878, 922, 990, 1259
AluI	AGCT	9 cut(s)	24, 56, 131, 335, 842, 878, 922, 990, 1259
Alw21I	GWGCWC	1 cut(s)	1151
Alw26I	GTCTC	4 cut(s)	216, 512, 597, 938
AoxI	GGCC	4 cut(s)	237, 482, 523, 1269
ApeKI	GCWGC	2 cut(s)	683, 1051
ArsI	GACNNNNNNTTYG	2 cut(s)	1055, 1087
AsiGI	ACCGGT	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	1177
AspS9I	GGNCC	2 cut(s)	482, 523
AsuHPI	GGTGA	5 cut(s)	31, 368, 758, 767, 1171
BaeGI	GKGCMC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	1329
BanII	GRGCYC	1 cut(s)	812
BbsI	GAAGAC	2 cut(s)	143, 858
Bbv12I	GWGCWC	1 cut(s)	1151
BbvI	GCAGC	2 cut(s)	670, 1063
BccI	CCATC	6 cut(s)	4, 313, 395, 1193, 1337, 1398
BcgI	CGANNNNNNTGC	2 cut(s)	1331, 1365
BciVI	GTATCC	1 cut(s)	646
BcoDI	GTCTC	4 cut(s)	216, 512, 597, 938
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	2 cut(s)	708, 1321
BfuI	GTATCC	1 cut(s)	646
BisI	GCNGC	2 cut(s)	684, 1052
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	2 cut(s)	685, 1053
BmgT120I	GGNCC	2 cut(s)	482, 523
BmiI	GGNNCC	5 cut(s)	277, 716, 809, 1239, 1331
BmsI	GCATC	3 cut(s)	38, 154, 809
BpiI	GAAGAC	2 cut(s)	143, 858
BpmI	CTGGAG	3 cut(s)	262, 316, 720
Bpu1102I	GCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	624
BsaI	GGTCTC	3 cut(s)	216, 512, 597
BsaJI	CCNNGG	4 cut(s)	598, 695, 950, 977
BsaWI	WCCGGW	3 cut(s)	777, 1153, 1332
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 1338, 1368
Bsc4I	CCNNNNNNNGG	4 cut(s)	479, 578, 743, 1233
Bse118I	RCCGGY	1 cut(s)	777
Bse1I	ACTGG	2 cut(s)	1178, 1272
Bse3DI	GCAATG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	624
BseDI	CCNNGG	4 cut(s)	598, 695, 950, 977
BseGI	GGATG	4 cut(s)	271, 324, 625, 1393
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	4 cut(s)	479, 578, 743, 1233
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	4 cut(s)	123, 435, 911, 1269
BseNI	ACTGG	2 cut(s)	1178, 1272
BseRI	GAGGAG	2 cut(s)	459, 885
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	670, 1063
BsgI	GTGCAG	1 cut(s)	1070
BshFI	GGCC	4 cut(s)	239, 484, 525, 1271
BshNI	GGYRCC	1 cut(s)	1329
BshTI	ACCGGT	1 cut(s)	777
BsiHKAI	GWGCWC	1 cut(s)	1151
BsiSI	CCGG	3 cut(s)	778, 1154, 1333
BslFI	GGGAC	2 cut(s)	161, 773
BslI	CCNNNNNNNGG	4 cut(s)	479, 578, 743, 1233
BsmAI	GTCTC	4 cut(s)	216, 512, 597, 938
BsmFI	GGGAC	2 cut(s)	161, 773
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	4 cut(s)	239, 484, 525, 1271
Bso31I	GGTCTC	3 cut(s)	216, 512, 597
Bsp1286I	GDGCHC	3 cut(s)	441, 812, 1151
Bsp1407I	TGTACA	1 cut(s)	1182
Bsp143I	GATC	2 cut(s)	1100, 1165
Bsp1720I	GCTNAGC	1 cut(s)	25
Bsp19I	CCATGG	2 cut(s)	950, 977
BspANI	GGCC	4 cut(s)	239, 484, 525, 1271
BspCNI	CTCAG	4 cut(s)	124, 436, 910, 1268
BspHI	TCATGA	2 cut(s)	634, 1424
BspLI	GGNNCC	5 cut(s)	277, 716, 809, 1239, 1331
BspMAI	CTGCAG	1 cut(s)	712
BspT107I	GGYRCC	1 cut(s)	1329
BspTNI	GGTCTC	3 cut(s)	216, 512, 597
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	777
BsrGI	TGTACA	1 cut(s)	1182
BsrI	ACTGG	2 cut(s)	1178, 1272
BssAI	RCCGGY	1 cut(s)	777
BssECI	CCNNGG	4 cut(s)	598, 695, 950, 977
BssMI	GATC	2 cut(s)	1100, 1165
BssT1I	CCWWGG	4 cut(s)	598, 695, 950, 977
Bst4CI	ACNGT	4 cut(s)	142, 262, 589, 1325
BstAUI	TGTACA	1 cut(s)	1182
BstDEI	CTNAG	6 cut(s)	25, 132, 397, 444, 897, 1255
BstDSI	CCRYGG	2 cut(s)	950, 977
BstF5I	GGATG	4 cut(s)	271, 324, 625, 1393
BstHHI	GCGC	1 cut(s)	1177
BstKTI	GATC	2 cut(s)	1103, 1168
BstMAI	GTCTC	4 cut(s)	216, 512, 597, 938
BstMBI	GATC	2 cut(s)	1100, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	1358
BstSFI	CTRYAG	2 cut(s)	708, 1321
BstSLI	GKGCMC	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	670, 1063
BstV2I	GAAGAC	2 cut(s)	143, 858
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	4 cut(s)	239, 484, 525, 1271
BtgI	CCRYGG	2 cut(s)	950, 977
BtsCI	GGATG	4 cut(s)	271, 324, 625, 1393
BtsI	GCAGTG	1 cut(s)	1359
BtsIMutI	CAGTG	4 cut(s)	258, 441, 1185, 1359
CciI	TCATGA	2 cut(s)	634, 1424
CfoI	GCGC	1 cut(s)	1177
Cfr10I	RCCGGY	1 cut(s)	777
Cfr13I	GGNCC	2 cut(s)	482, 523
Csp6I	GTAC	4 cut(s)	403, 901, 982, 1183
CspAI	ACCGGT	1 cut(s)	777
CviQI	GTAC	4 cut(s)	403, 901, 982, 1183
DdeI	CTNAG	6 cut(s)	25, 132, 397, 444, 897, 1255
DpnI	GATC	2 cut(s)	1102, 1167
DpnII	GATC	2 cut(s)	1100, 1165
Eco130I	CCWWGG	4 cut(s)	598, 695, 950, 977
Eco24I	GRGCYC	1 cut(s)	812
Eco31I	GGTCTC	3 cut(s)	216, 512, 597
Eco57I	CTGAAG	3 cut(s)	345, 495, 828
EcoT14I	CCWWGG	4 cut(s)	598, 695, 950, 977
EcoT38I	GRGCYC	1 cut(s)	812
ErhI	CCWWGG	4 cut(s)	598, 695, 950, 977
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	2 cut(s)	161, 773
Fnu4HI	GCNGC	2 cut(s)	684, 1052
FokI	GGATG	4 cut(s)	278, 331, 612, 1380
FriOI	GRGCYC	1 cut(s)	812
Fsp4HI	GCNGC	2 cut(s)	684, 1052
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	1176
GluI	GCNGC	2 cut(s)	684, 1052
GsuI	CTGGAG	3 cut(s)	262, 316, 720
HaeIII	GGCC	4 cut(s)	239, 484, 525, 1271
HapII	CCGG	3 cut(s)	778, 1154, 1333
HhaI	GCGC	1 cut(s)	1177
Hin6I	GCGC	1 cut(s)	1175
HinP1I	GCGC	1 cut(s)	1175
HincII	GTYRAC	2 cut(s)	934, 1063
HindII	GTYRAC	2 cut(s)	934, 1063
HinfI	GANTC	6 cut(s)	536, 666, 1026, 1037, 1364, 1406
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	3 cut(s)	778, 1154, 1333
HphI	GGTGA	5 cut(s)	31, 368, 758, 767, 1171
Hpy166II	GTNNAC	3 cut(s)	934, 1063, 1183
Hpy188I	TCNGA	2 cut(s)	392, 1105
Hpy188III	TCNNGA	7 cut(s)	295, 473, 635, 737, 835, 1300, 1425
Hpy8I	GTNNAC	3 cut(s)	934, 1063, 1183
Hpy99I	CGWCG	1 cut(s)	1343
HpyAV	CCTTC	5 cut(s)	296, 320, 1004, 1208, 1327
HpyCH4III	ACNGT	4 cut(s)	142, 262, 589, 1325
HpyCH4IV	ACGT	2 cut(s)	1065, 1108
HpyCH4V	TGCA	7 cut(s)	96, 194, 617, 710, 970, 1051, 1352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1358
HpyF3I	CTNAG	6 cut(s)	25, 132, 397, 444, 897, 1255
HpySE526I	ACGT	2 cut(s)	1065, 1108
HspAI	GCGC	1 cut(s)	1175
KspAI	GTTAAC	1 cut(s)	934
Kzo9I	GATC	2 cut(s)	1100, 1165
LmnI	GCTCC	5 cut(s)	281, 739, 807, 919, 1237
Lsp1109I	GCAGC	2 cut(s)	670, 1063
LweI	GCATC	3 cut(s)	38, 154, 809
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	1065, 1108
MaeIII	GTNAC	4 cut(s)	256, 368, 463, 490
MalI	GATC	2 cut(s)	1102, 1167
MboI	GATC	2 cut(s)	1100, 1165
MboII	GAAGA	5 cut(s)	36, 148, 575, 675, 858
MhlI	GDGCHC	3 cut(s)	441, 812, 1151
MluCI	AATT	2 cut(s)	432, 741
MlyI	GAGTC	2 cut(s)	1035, 1046
MseI	TTAA	3 cut(s)	576, 645, 933
MslI	CAYNNNNRTG	3 cut(s)	245, 639, 1086
MspI	CCGG	3 cut(s)	778, 1154, 1333
Mva1269I	GAATGC	1 cut(s)	970
MwoI	GCNNNNNNNGC	1 cut(s)	1358
NcoI	CCATGG	2 cut(s)	950, 977
NdeII	GATC	2 cut(s)	1100, 1165
NlaIV	GGNNCC	5 cut(s)	277, 716, 809, 1239, 1331
NmuCI	GTSAC	2 cut(s)	256, 490
PagI	TCATGA	2 cut(s)	634, 1424
PcsI	WCGNNNNNNNCGW	1 cut(s)	1105
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	4 cut(s)	536, 666, 1364, 1406
PflFI	GACNNNGTC	1 cut(s)	1067
PflMI	CCANNNNNTGG	1 cut(s)	743
PinAI	ACCGGT	1 cut(s)	777
PkrI	GCNGC	2 cut(s)	685, 1053
PleI	GAGTC	2 cut(s)	1034, 1045
PpsI	GAGTC	2 cut(s)	1034, 1045
PspN4I	GGNNCC	5 cut(s)	277, 716, 809, 1239, 1331
PspPI	GGNCC	2 cut(s)	482, 523
PstI	CTGCAG	1 cut(s)	712
PsyI	GACNNNGTC	1 cut(s)	1067
RsaI	GTAC	4 cut(s)	404, 902, 983, 1184
RsaNI	GTAC	4 cut(s)	403, 901, 982, 1183
RseI	CAYNNNNRTG	3 cut(s)	245, 639, 1086
SaqAI	TTAA	3 cut(s)	576, 645, 933
SatI	GCNGC	2 cut(s)	684, 1052
Sau3AI	GATC	2 cut(s)	1100, 1165
Sau96I	GGNCC	2 cut(s)	482, 523
SchI	GAGTC	2 cut(s)	1035, 1046
SduI	GDGCHC	3 cut(s)	441, 812, 1151
SfaNI	GCATC	3 cut(s)	38, 154, 809
SfcI	CTRYAG	2 cut(s)	708, 1321
SmiMI	CAYNNNNRTG	3 cut(s)	245, 639, 1086
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
Sse9I	AATT	2 cut(s)	432, 741
SspI	AATATT	3 cut(s)	416, 1120, 1210
SspMI	CTAG	1 cut(s)	57
StyI	CCWWGG	4 cut(s)	598, 695, 950, 977
TaaI	ACNGT	4 cut(s)	142, 262, 589, 1325
TaiI	ACGT	2 cut(s)	1068, 1111
TaqI	TCGA	2 cut(s)	1115, 1293
TasI	AATT	2 cut(s)	432, 741
TatI	WGTACW	2 cut(s)	402, 1182
TfiI	GAWTC	4 cut(s)	536, 666, 1364, 1406
Tru1I	TTAA	3 cut(s)	576, 645, 933
Tru9I	TTAA	3 cut(s)	576, 645, 933
TscAI	CASTG	4 cut(s)	265, 448, 1185, 1359
TseFI	GTSAC	2 cut(s)	256, 490
TseI	GCWGC	2 cut(s)	683, 1051
Tsp45I	GTSAC	2 cut(s)	256, 490
TspDTI	ATGAA	6 cut(s)	171, 197, 282, 576, 658, 858
TspRI	CASTG	4 cut(s)	265, 448, 1185, 1359
Tth111I	GACNNNGTC	1 cut(s)	1067
Van91I	CCANNNNNTGG	1 cut(s)	743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.