Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Forward (+)

58923129 .. 58925064

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0423800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGTGTGCCGAATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATCCTTGCTTTGAAAGGGATCCACTGAATGTCAAAATATTCCTCAAAATGCATAGGTCTGATTATGCTAAAAGATGGCTGAAGGAAATGCAAAAGATTGATAAGGACCACACCTTAACTCAACTTGAAACAACATGGCAAAATCTGGCTGTGGGTGGTTCTAAGTTACAGGAGGCATATCTCATCTTCCAAGATTTCTCTGAGAAGTCTCAGGATGCAGAGGATCCAGAAACTCTAGCCAACCTGGTCGTATGCTATCTTCACCTTGGAAAACCACCTTCTCGTTTTGTCAGCCAATCAAGACTTGCACATCCAGACCACGTCCTCGTCAAAGGTGCCTCAGCTGTAGAAGAGAGCTTTGACAGAGCTCTTCAATCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

145

Amino Acids

16.65

Weight (kDa)

6.96

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	24 - 88	5.7e-25	Coatomer epsilon subunit
Coatomer_E	PF04733	88 - 144	2.2e-14	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	386
AclWI	GGATC	4 cut(s)	65, 78, 269, 282
AcuI	CTGAAG	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	65, 179, 425
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	395, 408, 419
AluI	AGCT	3 cut(s)	395, 408, 419
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	4 cut(s)	65, 78, 269, 282
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	157
BamHI	GGATCC	2 cut(s)	70, 274
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
Bbv12I	GWGCWC	1 cut(s)	421
BbvCI	CCTCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	72, 276, 388
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	271, 361
BseMII	CTCAG	3 cut(s)	243, 275, 405
BsgI	GTGCAG	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	70, 274
BspCNI	CTCAG	3 cut(s)	244, 274, 404
BspLI	GGNNCC	3 cut(s)	72, 276, 388
BspPI	GGATC	4 cut(s)	65, 78, 269, 282
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	70, 274
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	396, 426
BstDEI	CTNAG	4 cut(s)	213, 252, 261, 391
BstF5I	GGATG	2 cut(s)	271, 361
BstKTI	GATC	2 cut(s)	73, 277
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	70, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	70, 274
BstYI	RGATCY	2 cut(s)	70, 274
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	271, 361
BtsIMutI	CAGTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	294
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	7 cut(s)	130, 200, 290, 345, 395, 408, 419
CviKI_1	RGCY	7 cut(s)	130, 200, 290, 345, 395, 408, 419
DdeI	CTNAG	4 cut(s)	213, 252, 261, 391
DpnI	GATC	2 cut(s)	72, 276
DpnII	GATC	2 cut(s)	70, 274
Eam1104I	CTCTTC	2 cut(s)	396, 426
EarI	CTCTTC	2 cut(s)	396, 426
Ecl136II	GAGCTC	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	189
FaiI	YATR	6 cut(s)	36, 105, 117, 187, 229, 304
FatI	CATG	1 cut(s)	185
FokI	GGATG	2 cut(s)	278, 348
FriOI	GRGCYC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	287
Hin1II	CATG	1 cut(s)	189
HinfI	GANTC	3 cut(s)	13, 24, 38
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	112, 253
Hpy188III	TCNNGA	4 cut(s)	263, 278, 351, 365
HpyAV	CCTTC	2 cut(s)	127, 339
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	30, 103, 142, 269, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	4 cut(s)	213, 252, 261, 391
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	70, 274
LguI	GCTCTTC	1 cut(s)	426
LpnPI	CCDG	7 cut(s)	182, 206, 248, 281, 291, 308, 378
LweI	GCATC	1 cut(s)	256
MabI	ACCWGGT	1 cut(s)	294
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	72, 276
MboI	GATC	2 cut(s)	70, 274
MboII	GAAGA	4 cut(s)	229, 302, 413, 413
MflI	RGATCY	2 cut(s)	70, 274
MhlI	GDGCHC	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	104, 217, 265, 386, 400
Mph1103I	ATGCAT	1 cut(s)	105
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeII	GATC	2 cut(s)	70, 274
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	72, 276, 388
NsiI	ATGCAT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	13, 38
PflFI	GACNNNGTC	1 cut(s)	371
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	72, 276, 388
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	70, 274
PsyI	GACNNNGTC	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	70, 274
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	421
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	157
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	316
TaiI	ACGT	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	13, 38
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	157
XspI	CTAG	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.