Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Forward (+)

46863735 .. 46868025

Gene Structure 4291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTCAATTCGAACCAAACTTGGTATAAGGTGTGATTTTGAATTTTTAGTGGTTAATATTGCTCTGGTTCATATTACACAAGGAGACCAGCTGGGAAAGGCAGTGATTGTGTCATGGGTGACTCTGGATGAACCAGGTTCCAGCAAAGTGCTTTATTGGAGCGCAAATAGCAAGAAAAAGACAGCTGTGGGAAAATTTTACACCTATAAGTACTACAATTACAGCTCTCCTTACATTCACCATGCAACAATCAGAAATTTAGAGTACAATACCAAATATTACTATGAGGTTGGAATTGGACACACAAAGCGGCAGTTCTGGTTTGTAACTCCTCCAGCAGTTGGGCCAGATGTCCCTTACACATTTGGTCTCATAGGGGATCTGGGCCAGAGCTTTGATTCAAATAAGACACTCACTCATTATGAATTAAATCCACAGAAAGGACAAACAGTATTGTTTGTTGGTGACCTCTCTTATGCGGATAACTATCCCAATCATGATAATCACAGATGGGATTCATGGGGAAGATTCGTGGAGAGAAGTGTTGCTTATCAACCTTGGATATGGACTGCAGGGAATCATGAACTTGATTTTGCTCCAGAAATTGGTGAAACCAAACCATTTAAGCCTTACACTCACCGGTATCATGTCCCATATAAGGCATCAGGGAGTACTTCCCCTCTTTGGTACTCAATCAAGAGAGCTTCCTCATACATCATAGTCTTATCTTCATATTCTGCATATGGTAAATACACTCCTCAGTACAAGTGGCTGGAGGAGGAGCTACCAAAAGTTAACAGGACTGAGACCCCATGGCTGACTGTTTTAGTGCATTCCCCATGGTACAATAGCTACAACTACCACTACATGGAAGGAGAGACCATGAGAGTGATGTTTGAGGCTTGGTTTGTGAAGTACAAAGTTGACGTGGTATTTGCTGGTCATGTCCATGCCTATGAACGATCTGAGCGTGTTTCCAACATTGCATACAACGTTATAAATGGTATTTGTTCTCCCGTGAAAGATCAATCTGCACCTGTGTACATCACCATTGGTGATGGAGGAAATCTTGAAGGCTTAGCTACCAATATGACAGAACCACAGCCAGCGTACTCGGCTTATAGAGAGGCCAGTTTTGGTCATGCCACTTTTGACATCAAGAACAGAACCCATGCTTACTACAGTTGGCACCGTAACCAAGATGGATATGCAGTGCAAGCTGACTCTATGTGGTTTTTCAACAGATACTACCATCCCGTTGATGATTCTACAAGTGCCCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

429

Amino Acids

49.54

Weight (kDa)

7.31

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	23 - 110	3.1e-16	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	121 - 319	9.3e-28	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	345 - 402	5.5e-20	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	998
AccB1I	GGYRCC	1 cut(s)	1188
AccB7I	CCANNNNNTGG	3 cut(s)	341, 605, 868
AciI	CCGC	2 cut(s)	310, 479
AclI	AACGTT	1 cut(s)	993
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	3 cut(s)	41, 194, 256
AfaI	GTAC	9 cut(s)	212, 266, 673, 689, 764, 845, 917, 1043, 1112
AfiI	CCNNNNNNNGG	6 cut(s)	341, 440, 605, 658, 684, 868
AgeI	ACCGGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	41, 402, 1073, 1240
AjiI	CACGTC	1 cut(s)	928
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	9 cut(s)	91, 185, 225, 393, 704, 784, 852, 1082, 1220
AluI	AGCT	9 cut(s)	91, 185, 225, 393, 704, 784, 852, 1082, 1220
Alw26I	GTCTC	4 cut(s)	78, 374, 800, 872
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	3 cut(s)	344, 385, 1128
ApoI	RAATTY	3 cut(s)	41, 194, 256
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AsiGI	ACCGGT	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	344, 385
AsuHPI	GGTGA	7 cut(s)	130, 230, 476, 620, 629, 1039, 1067
AsuII	TTCGAA	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	1279
BanI	GGYRCC	1 cut(s)	1188
BccI	CCATC	4 cut(s)	504, 1052, 1196, 1260
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	4 cut(s)	78, 374, 800, 872
BfmI	CTRYAG	2 cut(s)	570, 1180
BisI	GCNGC	1 cut(s)	311
BlpI	GCTNAGC	1 cut(s)	1078
BlsI	GCNGC	1 cut(s)	312
BmcAI	AGTACT	2 cut(s)	212, 673
Bme1390I	CCNGG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	928
BmgT120I	GGNCC	2 cut(s)	344, 385
BmiI	GGNNCC	2 cut(s)	139, 1190
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	671
BpmI	CTGGAG	3 cut(s)	318, 582, 794
Bpu1102I	GCTNAGC	1 cut(s)	1078
Bpu14I	TTCGAA	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	486
BsaI	GGTCTC	4 cut(s)	78, 374, 800, 872
BsaJI	CCNNGG	3 cut(s)	557, 812, 839
BsaWI	WCCGGW	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	6 cut(s)	341, 440, 605, 658, 684, 868
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	1131
Bse3DI	GCAATG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	557, 812, 839
BseGI	GGATG	2 cut(s)	133, 1252
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	6 cut(s)	341, 440, 605, 658, 684, 868
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	3 cut(s)	773, 795, 957
BseNI	ACTGG	1 cut(s)	1131
BseRI	GAGGAG	4 cut(s)	321, 747, 791, 794
BseSI	GKGCMC	1 cut(s)	1279
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	1017
BshFI	GGCC	3 cut(s)	346, 387, 1130
BshNI	GGYRCC	1 cut(s)	1188
BshTI	ACCGGT	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	640
BslFI	GGGAC	2 cut(s)	338, 635
BslI	CCNNNNNNNGG	6 cut(s)	341, 440, 605, 658, 684, 868
BsmAI	GTCTC	4 cut(s)	78, 374, 800, 872
BsmFI	GGGAC	2 cut(s)	338, 635
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	3 cut(s)	346, 387, 1130
Bso31I	GGTCTC	4 cut(s)	78, 374, 800, 872
Bsp119I	TTCGAA	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	1279
Bsp1407I	TGTACA	1 cut(s)	1041
Bsp143I	GATC	3 cut(s)	379, 962, 1024
Bsp1720I	GCTNAGC	1 cut(s)	1078
Bsp19I	CCATGG	2 cut(s)	812, 839
BspACI	CCGC	2 cut(s)	310, 479
BspANI	GGCC	3 cut(s)	346, 387, 1130
BspCNI	CTCAG	3 cut(s)	772, 796, 958
BspHI	TCATGA	3 cut(s)	496, 580, 1283
BspLI	GGNNCC	2 cut(s)	139, 1190
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	1188
BspTNI	GGTCTC	4 cut(s)	78, 374, 800, 872
BsrDI	GCAATG	1 cut(s)	981
BsrFI	RCCGGY	1 cut(s)	639
BsrGI	TGTACA	1 cut(s)	1041
BsrI	ACTGG	1 cut(s)	1131
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	3 cut(s)	557, 812, 839
BssMI	GATC	3 cut(s)	379, 962, 1024
BssT1I	CCWWGG	3 cut(s)	557, 812, 839
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	4 cut(s)	451, 823, 1184, 1193
BstAUI	TGTACA	1 cut(s)	1041
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	1107, 1218
BstDEI	CTNAG	4 cut(s)	759, 804, 966, 1078
BstDSI	CCRYGG	2 cut(s)	812, 839
BstEII	GGTNACC	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	133, 1252
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	382, 965, 1027
BstMAI	GTCTC	4 cut(s)	78, 374, 800, 872
BstMBI	GATC	3 cut(s)	379, 962, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 1115, 1217
BstNI	CCWGG	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	2 cut(s)	570, 1180
BstSLI	GKGCMC	1 cut(s)	1279
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	346, 387, 1130
BtgI	CCRYGG	2 cut(s)	812, 839
BtrI	CACGTC	1 cut(s)	928
BtsCI	GGATG	2 cut(s)	133, 1252
BtsI	GCAGTG	2 cut(s)	108, 1218
BtsIMutI	CAGTG	2 cut(s)	108, 1218
Cac8I	GCNNGC	2 cut(s)	1107, 1218
CciI	TCATGA	3 cut(s)	496, 580, 1283
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	344, 385
CsiI	ACCWGGT	1 cut(s)	133
Csp6I	GTAC	9 cut(s)	211, 265, 672, 688, 763, 844, 916, 1042, 1111
CspAI	ACCGGT	1 cut(s)	639
CviQI	GTAC	9 cut(s)	211, 265, 672, 688, 763, 844, 916, 1042, 1111
DdeI	CTNAG	4 cut(s)	759, 804, 966, 1078
DpnI	GATC	3 cut(s)	381, 964, 1026
DpnII	GATC	3 cut(s)	379, 962, 1024
Eco130I	CCWWGG	3 cut(s)	557, 812, 839
Eco31I	GGTCTC	4 cut(s)	78, 374, 800, 872
Eco91I	GGTNACC	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	557, 812, 839
ErhI	CCWWGG	3 cut(s)	557, 812, 839
FalI	AAGNNNNNCTT	2 cut(s)	532, 564
FaqI	GGGAC	2 cut(s)	338, 635
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	140, 1239
Fsp4HI	GCNGC	1 cut(s)	311
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	311
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	3 cut(s)	318, 582, 794
HaeIII	GGCC	3 cut(s)	346, 387, 1130
HapII	CCGG	1 cut(s)	640
HhaI	GCGC	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	2 cut(s)	796, 925
HindII	GTYRAC	2 cut(s)	796, 925
HinfI	GANTC	7 cut(s)	121, 398, 515, 528, 577, 1223, 1265
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	1 cut(s)	640
HphI	GGTGA	7 cut(s)	130, 230, 476, 620, 629, 1039, 1067
Hpy166II	GTNNAC	3 cut(s)	796, 925, 1042
Hpy188I	TCNGA	2 cut(s)	254, 967
Hpy188III	TCNNGA	8 cut(s)	125, 497, 581, 599, 697, 1070, 1159, 1284
Hpy8I	GTNNAC	3 cut(s)	796, 925, 1042
HpyAV	CCTTC	2 cut(s)	866, 1067
HpyCH4III	ACNGT	4 cut(s)	451, 823, 1184, 1193
HpyCH4IV	ACGT	2 cut(s)	927, 993
HpyCH4V	TGCA	8 cut(s)	245, 572, 740, 832, 986, 1034, 1211, 1216
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 1115, 1217
HpyF3I	CTNAG	4 cut(s)	759, 804, 966, 1078
HpySE526I	ACGT	2 cut(s)	927, 993
HspAI	GCGC	1 cut(s)	162
KspAI	GTTAAC	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	379, 962, 1024
LmnI	GCTCC	3 cut(s)	159, 601, 781
LweI	GCATC	1 cut(s)	671
MabI	ACCWGGT	1 cut(s)	133
MaeII	ACGT	2 cut(s)	927, 993
MaeIII	GTNAC	4 cut(s)	118, 325, 464, 1193
MalI	GATC	3 cut(s)	381, 964, 1026
MboI	GATC	3 cut(s)	379, 962, 1024
MboII	GAAGA	2 cut(s)	537, 720
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	1279
MluCI	AATT	8 cut(s)	6, 41, 194, 217, 256, 294, 425, 603
MlyI	GAGTC	2 cut(s)	115, 1217
MmeI	TCCRAC	2 cut(s)	271, 1002
MseI	TTAA	4 cut(s)	54, 428, 624, 795
MslI	CAYNNNNRTG	3 cut(s)	887, 948, 954
MspA1I	CMGCKG	2 cut(s)	91, 185
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	168, 1115, 1217
NcoI	CCATGG	2 cut(s)	812, 839
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	3 cut(s)	379, 962, 1024
NlaIV	GGNNCC	2 cut(s)	139, 1190
NmeAIII	GCCGAG	1 cut(s)	1094
NmuCI	GTSAC	2 cut(s)	118, 464
NspV	TTCGAA	1 cut(s)	10
PagI	TCATGA	3 cut(s)	496, 580, 1283
PcsI	WCGNNNNNNNCGW	1 cut(s)	967
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	5 cut(s)	398, 515, 528, 577, 1265
PflMI	CCANNNNNTGG	3 cut(s)	341, 605, 868
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	2 cut(s)	115, 1217
PpsI	GAGTC	2 cut(s)	115, 1217
PsiI	TTATAA	1 cut(s)	998
Psp1406I	AACGTT	1 cut(s)	993
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	139, 1190
PspPI	GGNCC	2 cut(s)	344, 385
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	2 cut(s)	91, 185
RsaI	GTAC	9 cut(s)	212, 266, 673, 689, 764, 845, 917, 1043, 1112
RsaNI	GTAC	9 cut(s)	211, 265, 672, 688, 763, 844, 916, 1042, 1111
RseI	CAYNNNNRTG	3 cut(s)	887, 948, 954
SaqAI	TTAA	4 cut(s)	54, 428, 624, 795
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	3 cut(s)	379, 962, 1024
Sau96I	GGNCC	2 cut(s)	344, 385
ScaI	AGTACT	2 cut(s)	212, 673
SchI	GAGTC	2 cut(s)	115, 1217
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	1279
SexAI	ACCWGGT	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	2 cut(s)	570, 1180
SfuI	TTCGAA	1 cut(s)	10
SmiMI	CAYNNNNRTG	3 cut(s)	887, 948, 954
Sse9I	AATT	8 cut(s)	6, 41, 194, 217, 256, 294, 425, 603
SsiI	CCGC	2 cut(s)	310, 479
SspI	AATATT	2 cut(s)	58, 278
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	3 cut(s)	557, 812, 839
TaaI	ACNGT	4 cut(s)	451, 823, 1184, 1193
TaiI	ACGT	2 cut(s)	930, 996
TaqI	TCGA	1 cut(s)	10
TasI	AATT	8 cut(s)	6, 41, 194, 217, 256, 294, 425, 603
TatI	WGTACW	6 cut(s)	210, 264, 671, 762, 915, 1041
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	5 cut(s)	398, 515, 528, 577, 1265
Tru1I	TTAA	4 cut(s)	54, 428, 624, 795
Tru9I	TTAA	4 cut(s)	54, 428, 624, 795
TscAI	CASTG	2 cut(s)	108, 1218
TseFI	GTSAC	2 cut(s)	118, 464
Tsp45I	GTSAC	2 cut(s)	118, 464
TspDTI	ATGAA	7 cut(s)	59, 144, 438, 507, 597, 720, 972
TspRI	CASTG	2 cut(s)	108, 1218
Van91I	CCANNNNNTGG	3 cut(s)	341, 605, 868
XapI	RAATTY	3 cut(s)	41, 194, 256
ZrmI	AGTACT	2 cut(s)	212, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.