Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022454.1

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Forward (+)

15672 .. 17874

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022454.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgggtgtaatgggttttgcttctgcttcagtattctcttcaaagctagctgcttttttggttttgggtttggttttgaatttggggttggtttgtaatggaggaaagaccagcacttttgtcaggaaagtggagaaaactgtggatatgcctctagaaagcgatgtcttcaaagcccctcatggctataatgctccagaacaagttcatattacacaaggagaccagctgggaaaggcagtgattgtgtcatgggtgactgtggatgaaccaggttccagcaaagtgctttattggagcgcaaatagcaagaaaaagacagctgtgggaaaattttacacctataagtactacaattacagctctccttacattcaccatgcaacaatcagaaatttagagtacaataccaaatattactatgaggttggaattggacacacaaaacggcagttctggtttgtaactcctccagcagttgggccagatgtcccttacacatttggtctcataggggatctgggccagagctttgattcaaataagacactcactcattatgaattaaatccacagaaaggacaaacagtattgtttgttggtgacctctcttatgcggataactatcccaatcatgataatcacagatgggattcatggggaagattcgtggagagaagtgttgcttatcaaccttggatatggactgcagggaatcatgaacttgattttgctccagaaattggtgaaaccaaaccatttaagccttacactcaccggtatcatgtcccatataaggcatcagggagtacttcccctctttggtactcaatcaagagagcttcctcacacatcatagtcttatcttcatattctgcatatggtaaggaaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

298

Amino Acids

33.6

Weight (kDa)

8.94

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	479, 743
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	1 cut(s)	525
AcsI	RAATTY	3 cut(s)	79, 332, 394
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	4 cut(s)	350, 404, 811, 827
AfiI	CCNNNNNNNGG	5 cut(s)	479, 578, 743, 796, 822
AgeI	ACCGGT	1 cut(s)	777
AgsI	TTSAA	4 cut(s)	42, 79, 172, 540
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	7 cut(s)	46, 50, 229, 323, 363, 531, 842
AluI	AGCT	7 cut(s)	46, 50, 229, 323, 363, 531, 842
Alw26I	GTCTC	2 cut(s)	216, 512
AlwI	GGATC	1 cut(s)	525
AoxI	GGCC	2 cut(s)	482, 523
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	3 cut(s)	79, 332, 394
AsiGI	ACCGGT	1 cut(s)	777
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	482, 523
AsuHPI	GGTGA	5 cut(s)	268, 368, 614, 758, 767
AsuNHI	GCTAGC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	642
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	216, 512
BfaI	CTAG	2 cut(s)	47, 155
BfmI	CTRYAG	1 cut(s)	708
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	2 cut(s)	350, 811
Bme1390I	CCNGG	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	482, 523
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	809
BmtI	GCTAGC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	160
BpmI	CTGGAG	3 cut(s)	180, 456, 720
BsaBI	GATNNNNATC	1 cut(s)	624
BsaI	GGTCTC	2 cut(s)	216, 512
BsaJI	CCNNGG	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	777
Bsc4I	CCNNNNNNNGG	5 cut(s)	479, 578, 743, 796, 822
Bse118I	RCCGGY	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	5 cut(s)	479, 578, 743, 796, 822
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	484, 525
BshTI	ACCGGT	1 cut(s)	777
BsiSI	CCGG	1 cut(s)	778
BslFI	GGGAC	2 cut(s)	476, 773
BslI	CCNNNNNNNGG	5 cut(s)	479, 578, 743, 796, 822
BsmAI	GTCTC	2 cut(s)	216, 512
BsmFI	GGGAC	2 cut(s)	476, 773
BsnI	GGCC	2 cut(s)	484, 525
Bso31I	GGTCTC	2 cut(s)	216, 512
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	2 cut(s)	484, 525
BspHI	TCATGA	2 cut(s)	634, 718
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	712
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	525
BspTNI	GGTCTC	2 cut(s)	216, 512
BsrFI	RCCGGY	1 cut(s)	777
BssAI	RCCGGY	1 cut(s)	777
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	142, 262, 589
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	48
BstEII	GGTNACC	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	2 cut(s)	216, 512
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	484, 525
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	2 cut(s)	634, 718
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	777
Cfr13I	GGNCC	2 cut(s)	482, 523
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	4 cut(s)	349, 403, 810, 826
CspAI	ACCGGT	1 cut(s)	777
CviAII	CATG	7 cut(s)	182, 252, 380, 635, 657, 719, 785
CviQI	GTAC	4 cut(s)	349, 403, 810, 826
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	695
Eco31I	GGTCTC	2 cut(s)	216, 512
Eco57I	CTGAAG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	7 cut(s)	185, 255, 383, 638, 660, 722, 788
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	2 cut(s)	476, 773
FatI	CATG	7 cut(s)	181, 251, 379, 634, 656, 718, 784
FauNDI	CATATG	1 cut(s)	880
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	47, 155
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	3 cut(s)	180, 456, 720
HaeIII	GGCC	2 cut(s)	484, 525
HapII	CCGG	1 cut(s)	778
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	7 cut(s)	185, 255, 383, 638, 660, 722, 788
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	536, 653, 666, 715
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	5 cut(s)	268, 368, 614, 758, 767
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	7 cut(s)	124, 155, 197, 635, 719, 737, 835
HpyCH4III	ACNGT	3 cut(s)	142, 262, 589
HpyCH4V	TGCA	3 cut(s)	383, 710, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
Hsp92II	CATG	7 cut(s)	185, 255, 383, 638, 660, 722, 788
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	517
LmnI	GCTCC	3 cut(s)	199, 297, 739
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	809
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	2 cut(s)	47, 155
MaeIII	GTNAC	3 cut(s)	256, 463, 602
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	4 cut(s)	30, 160, 675, 858
MflI	RGATCY	1 cut(s)	517
MluCI	AATT	7 cut(s)	79, 332, 355, 394, 432, 563, 741
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	8 cut(s)	95, 162, 189, 418, 480, 617, 828, 856
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	2 cut(s)	566, 762
MspA1I	CMGCKG	2 cut(s)	229, 323
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	1 cut(s)	517
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	7 cut(s)	185, 255, 383, 638, 660, 722, 788
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	256, 602
PagI	TCATGA	2 cut(s)	634, 718
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	4 cut(s)	536, 653, 666, 715
PflMI	CCANNNNNTGG	2 cut(s)	479, 743
PinAI	ACCGGT	1 cut(s)	777
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	482, 523
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	2 cut(s)	229, 323
RsaI	GTAC	4 cut(s)	350, 404, 811, 827
RsaNI	GTAC	4 cut(s)	349, 403, 810, 826
SaqAI	TTAA	2 cut(s)	566, 762
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	2 cut(s)	482, 523
ScaI	AGTACT	2 cut(s)	350, 811
ScrFI	CCNGG	1 cut(s)	273
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	1 cut(s)	708
Sse9I	AATT	7 cut(s)	79, 332, 355, 394, 432, 563, 741
SsiI	CCGC	1 cut(s)	617
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	2 cut(s)	47, 155
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	3 cut(s)	142, 262, 589
TasI	AATT	7 cut(s)	79, 332, 355, 394, 432, 563, 741
TatI	WGTACW	3 cut(s)	348, 402, 809
TfiI	GAWTC	4 cut(s)	536, 653, 666, 715
Tru1I	TTAA	2 cut(s)	566, 762
Tru9I	TTAA	2 cut(s)	566, 762
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	256, 602
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	256, 602
TspDTI	ATGAA	6 cut(s)	197, 282, 576, 645, 735, 858
TspRI	CASTG	1 cut(s)	246
Van91I	CCANNNNNTGG	2 cut(s)	479, 743
XapI	RAATTY	3 cut(s)	79, 332, 394
XbaI	TCTAGA	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	2 cut(s)	47, 155
ZrmI	AGTACT	2 cut(s)	350, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.