Rorug06G0026200

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
3185202 .. 3186469
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0026200.1

Sequence Viewer

Length: 1158 bp
ATGAATATGGATATCTTAAGCTGGAATTGTAGGGGAATCTGCAATGATGCAACACGTAGGGCGTTGAAGGATATTATATCTCAGAATCGTCCCCAAATGGTTTTTCTTTGTGAAACGAAGATAAGTCGCAAATCGGATCTTCTCGATCTACATAAAGCCTTAGGGTTTCAACACTTCAAGGAGGTCCTGAGCGATGGAAATTCTGGGGGTCTAGGCATGTTTTGGAATGAGGATGTCCAGGTTCAGGTGTGTACAACTTCTGCCCATCATATTGACTTGGTGATTAACGGAGGAGCAGGTGAACCTAACTGGTGGTTGACTGGATTTTATGGCTTTGCCAGAACAGTGGATCGGGATCGTTCTTGGGCTTTGATGAGGGAGCTGAGTGATCTTGATTCGCTCCCTTGGGACGTCGTTATCGGAGATTTTAATGAAATTCTCAACAGTTCTGAGAAGATTGACGGTCCGGTGAGGACCGAGAGGCAAATGCGGGGTTTTAGGGAGGCTATGGGCTATTGTGATCTACTAGATTTAGGCTTCTATGGTTCCATGTGCACTTGGTGGAATTCTGAGACTCAACTGCGACTGGACAGAGCAGTATGTACTCCCACATGGTGTGATCTCTTCGGCCATTCTAAATTGCGTCATTTACTCCCAAGTGACTCGGATCACGTTCCAATTCTGTTGTGGGCCAGTTCCGTTCCTTTGGTTCAGCAGCCACGCCATTATCGTTTCAAATTTGAGGCATATTGGTTGCAACACCAGGAGTGTGATGGCATAGTGGAGGAGGGGTGGAATATCGACGTTACCGGTACTCCCATGTACTGTGTGACCAAGAAGATTATGCACACTCGCATGAAGTTGGATAAATGGCAGAAACAGGTGTTTAAAGCAAGGCAGATGAGTATGTTGGGTATTCGGGAGCGTCTGGAGGAGCTTATGGATGTTCCCATTTCGGAGGCGGTGCAGTCAGAGAAGAAGAGCTTGCTGGATCGCTTACAAACTTTGTTATCGCAGGAGGAAACTTTTTGGCGTCAAAGGTCCAAAGTTACATGGTTAAAGGAGGGAGATAGGAATACATGCTTCTTCCATAGAAGGCGTCGAACAGACGAAGGAAAAATATGCTTCTGGGTCTTTATGATGAGCATGAGTAAATAA

Protein Analysis

385

Amino Acids

45.09

Weight (kDa)

6.83

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 208 9.4e-13 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 287
AatII GACGTC 1 cut(s) 414
Acc36I ACCTGC 1 cut(s) 287
AciI CCGC 2 cut(s) 490, 962
AclWI GGATC 5 cut(s) 144, 357, 363, 675, 999
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 4 cut(s) 199, 435, 565, 737
AcyI GRCGYC 3 cut(s) 411, 1033, 1099
AdeI CACNNNGTG 2 cut(s) 561, 615
AfaI GTAC 4 cut(s) 253, 604, 814, 824
AfiI CCNNNNNNNGG 1 cut(s) 244
AflII CTTAAG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 809
AgsI TTSAA 4 cut(s) 67, 170, 178, 736
AjnI CCWGG 2 cut(s) 237, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 4 cut(s) 21, 382, 937, 984
AluI AGCT 4 cut(s) 21, 382, 937, 984
Alw21I GWGCWC 1 cut(s) 557
Alw26I GTCTC 1 cut(s) 566
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 5 cut(s) 144, 357, 363, 675, 999
AoxI GGCC 2 cut(s) 628, 690
ApaLI GTGCAC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 4 cut(s) 199, 435, 565, 737
AsiGI ACCGGT 1 cut(s) 809
AspS9I GGNCC 5 cut(s) 184, 464, 474, 690, 1041
AsuHPI GGTGA 3 cut(s) 292, 311, 481
AvaII GGWCC 4 cut(s) 184, 464, 474, 1041
AxyI CCTNAGG 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 557
BbvI GCAGC 1 cut(s) 727
BccI CCATC 3 cut(s) 188, 273, 767
BciT130I CCWGG 2 cut(s) 239, 764
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 2 cut(s) 212, 527
BfrI CTTAAG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 287
BisI GCNGC 1 cut(s) 716
BlsI GCNGC 1 cut(s) 717
Bme1390I CCNGG 2 cut(s) 239, 764
Bme18I GGWCC 4 cut(s) 184, 464, 474, 1041
BmgT120I GGNCC 5 cut(s) 184, 464, 474, 690, 1041
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 2 cut(s) 239, 764
BmsI GCATC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 950
Bpu10I CCTNAGC 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 3 cut(s) 411, 1033, 1099
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 2 cut(s) 466, 809
BsaXI ACNNNNNCTCC 4 cut(s) 776, 799, 806, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse118I RCCGGY 1 cut(s) 809
Bse1I ACTGG 4 cut(s) 314, 325, 591, 693
Bse21I CCTNAGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 2 cut(s) 239, 764
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 2 cut(s) 238, 949
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 5 cut(s) 95, 179, 374, 441, 561
BseNI ACTGG 4 cut(s) 314, 325, 591, 693
BseRI GAGGAG 3 cut(s) 306, 800, 947
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 1 cut(s) 727
BsgI GTGCAG 1 cut(s) 986
BshFI GGCC 2 cut(s) 630, 692
BshTI ACCGGT 1 cut(s) 809
BsiHKAI GWGCWC 1 cut(s) 557
BsiSI CCGG 2 cut(s) 467, 810
BslFI GGGAC 2 cut(s) 75, 422
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 75, 422
BsnI GGCC 2 cut(s) 630, 692
Bsp1286I GDGCHC 1 cut(s) 557
Bsp1407I TGTACA 1 cut(s) 251
Bsp143I GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
BspACI CCGC 2 cut(s) 490, 962
BspANI GGCC 2 cut(s) 630, 692
BspCNI CTCAG 5 cut(s) 94, 180, 375, 442, 562
BspLI GGNNCC 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 5 cut(s) 144, 357, 363, 675, 999
BspQI GCTCTTC 1 cut(s) 974
BspTI CTTAAG 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 809
BsrGI TGTACA 1 cut(s) 251
BsrI ACTGG 4 cut(s) 314, 325, 591, 693
BssAI RCCGGY 1 cut(s) 809
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
BssNI GRCGYC 3 cut(s) 411, 1033, 1099
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 239, 764
Bst4CI ACNGT 4 cut(s) 346, 446, 464, 827
Bst6I CTCTTC 2 cut(s) 629, 974
BstACI GRCGYC 3 cut(s) 411, 1033, 1099
BstAFI CTTAAG 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 986
BstDEI CTNAG 6 cut(s) 81, 160, 188, 383, 450, 570
BstF5I GGATG 2 cut(s) 238, 949
BstKTI GATC 9 cut(s) 139, 148, 352, 358, 391, 523, 622, 670, 994
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
BstNI CCWGG 2 cut(s) 239, 764
BstNSI RCATGY 2 cut(s) 220, 1083
BstSCI CCNGG 2 cut(s) 237, 762
BstSLI GKGCMC 1 cut(s) 557
BstV1I GCAGC 1 cut(s) 727
BstX2I RGATCY 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 1 cut(s) 136
Bsu36I CCTNAGG 1 cut(s) 160
BsuRI GGCC 2 cut(s) 630, 692
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 238, 949
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 986
Cfr10I RCCGGY 1 cut(s) 809
Cfr13I GGNCC 5 cut(s) 184, 464, 474, 690, 1041
CpoI CGGWCCG 1 cut(s) 464
CseI GACGC 4 cut(s) 632, 914, 1022, 1088
Csp6I GTAC 4 cut(s) 252, 603, 813, 823
CspAI ACCGGT 1 cut(s) 809
CspI CGGWCCG 1 cut(s) 464
CviAII CATG 8 cut(s) 217, 550, 612, 820, 856, 1053, 1080, 1147
CviQI GTAC 4 cut(s) 252, 603, 813, 823
DdeI CTNAG 6 cut(s) 81, 160, 188, 383, 450, 570
DpnI GATC 9 cut(s) 138, 147, 351, 357, 390, 522, 621, 669, 993
DpnII GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
DraI TTTAAA 1 cut(s) 889
DraIII CACNNNGTG 2 cut(s) 561, 615
EaeI YGGCCR 1 cut(s) 628
Eam1104I CTCTTC 2 cut(s) 629, 974
EarI CTCTTC 2 cut(s) 629, 974
Eco130I CCWWGG 1 cut(s) 404
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 4 cut(s) 184, 464, 474, 1041
Eco81I CCTNAGG 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 237, 762
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 8 cut(s) 220, 553, 615, 823, 859, 1056, 1083, 1150
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FaqI GGGAC 2 cut(s) 75, 422
FatI CATG 8 cut(s) 216, 549, 611, 819, 855, 1052, 1079, 1146
FauI CCCGC 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 716
FokI GGATG 2 cut(s) 245, 956
Fsp4HI GCNGC 1 cut(s) 716
FspBI CTAG 2 cut(s) 212, 527
GluI GCNGC 1 cut(s) 716
GsuI CTGGAG 1 cut(s) 950
HaeIII GGCC 2 cut(s) 630, 692
HapII CCGG 2 cut(s) 467, 810
HgaI GACGC 4 cut(s) 632, 914, 1022, 1088
Hin1I GRCGYC 3 cut(s) 411, 1033, 1099
Hin1II CATG 8 cut(s) 220, 553, 615, 823, 859, 1056, 1083, 1150
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 5 cut(s) 36, 85, 395, 574, 662
HpaII CCGG 2 cut(s) 467, 810
HphI GGTGA 3 cut(s) 292, 311, 481
Hpy166II GTNNAC 4 cut(s) 252, 302, 318, 555
Hpy188I TCNGA 8 cut(s) 84, 136, 422, 451, 571, 667, 958, 973
Hpy188III TCNNGA 6 cut(s) 143, 187, 353, 392, 920, 929
Hpy8I GTNNAC 4 cut(s) 252, 302, 318, 555
Hpy99I CGWCG 3 cut(s) 416, 806, 1104
HpyAV CCTTC 3 cut(s) 61, 1089, 1106
HpyCH4III ACNGT 4 cut(s) 346, 446, 464, 827
HpyCH4IV ACGT 4 cut(s) 55, 411, 672, 804
HpyCH4V TGCA 6 cut(s) 42, 50, 555, 757, 847, 967
HpyF3I CTNAG 6 cut(s) 81, 160, 188, 383, 450, 570
HpySE526I ACGT 4 cut(s) 55, 411, 672, 804
Hsp92I GRCGYC 3 cut(s) 411, 1033, 1099
Hsp92II CATG 8 cut(s) 220, 553, 615, 823, 859, 1056, 1083, 1150
Kzo9I GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
LguI GCTCTTC 1 cut(s) 974
LmnI GCTCC 5 cut(s) 293, 379, 405, 922, 934
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 1 cut(s) 37
MaeI CTAG 2 cut(s) 212, 527
MaeII ACGT 4 cut(s) 55, 411, 672, 804
MaeIII GTNAC 4 cut(s) 659, 805, 829, 1048
MalI GATC 9 cut(s) 138, 147, 351, 357, 390, 522, 621, 669, 993
MboI GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
MboII GAAGA 8 cut(s) 130, 131, 466, 616, 850, 988, 991, 1078
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 7 cut(s) 25, 199, 435, 565, 638, 678, 737
MlyI GAGTC 2 cut(s) 568, 656
MmeI TCCRAC 1 cut(s) 843
MseI TTAA 5 cut(s) 17, 285, 429, 888, 1058
MslI CAYNNNNRTG 1 cut(s) 854
MspCI CTTAAG 1 cut(s) 16
MspI CCGG 2 cut(s) 467, 810
MspR9I CCNGG 2 cut(s) 239, 764
MvaI CCWGG 2 cut(s) 239, 764
NdeII GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
NlaIII CATG 8 cut(s) 220, 553, 615, 823, 859, 1056, 1083, 1150
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 659, 829
NspI RCATGY 2 cut(s) 220, 1083
PaqCI CACCTGC 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 974
PcsI WCGNNNNNNNCGW 1 cut(s) 727
PfeI GAWTC 3 cut(s) 36, 85, 395
PinAI ACCGGT 1 cut(s) 809
PkrI GCNGC 1 cut(s) 717
PleI GAGTC 2 cut(s) 568, 656
PpsI GAGTC 2 cut(s) 568, 656
Ppu21I YACGTR 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 237, 762
PspGI CCWGG 2 cut(s) 237, 762
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 5 cut(s) 184, 464, 474, 690, 1041
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 4 cut(s) 253, 604, 814, 824
RsaNI GTAC 4 cut(s) 252, 603, 813, 823
RseI CAYNNNNRTG 1 cut(s) 854
Rsr2I CGGWCCG 1 cut(s) 464
RsrII CGGWCCG 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 974
SaqAI TTAA 5 cut(s) 17, 285, 429, 888, 1058
SatI GCNGC 1 cut(s) 716
Sau3AI GATC 9 cut(s) 136, 145, 349, 355, 388, 520, 619, 667, 991
Sau96I GGNCC 5 cut(s) 184, 464, 474, 690, 1041
SchI GAGTC 2 cut(s) 568, 656
ScrFI CCNGG 2 cut(s) 239, 764
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 4 cut(s) 184, 464, 474, 1041
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 7 cut(s) 25, 199, 435, 565, 638, 678, 737
SsiI CCGC 2 cut(s) 490, 962
SspMI CTAG 2 cut(s) 212, 527
StyD4I CCNGG 2 cut(s) 237, 762
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 4 cut(s) 346, 446, 464, 827
TaiI ACGT 4 cut(s) 58, 414, 675, 807
TaqI TCGA 3 cut(s) 144, 801, 1102
TaqII GACCGA 1 cut(s) 491
TasI AATT 7 cut(s) 25, 199, 435, 565, 638, 678, 737
TatI WGTACW 3 cut(s) 251, 602, 822
TfiI GAWTC 3 cut(s) 36, 85, 395
Tru1I TTAA 5 cut(s) 17, 285, 429, 888, 1058
Tru9I TTAA 5 cut(s) 17, 285, 429, 888, 1058
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 2 cut(s) 659, 829
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 2 cut(s) 659, 829
TspDTI ATGAA 3 cut(s) 17, 447, 872
TspGWI ACGGA 2 cut(s) 303, 688
TspRI CASTG 1 cut(s) 351
Vha464I CTTAAG 1 cut(s) 16
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 4 cut(s) 184, 464, 474, 1041
XapI RAATTY 4 cut(s) 199, 435, 565, 737
XceI RCATGY 2 cut(s) 220, 1083
XcmI CCANNNNNNNNNTGG 2 cut(s) 684, 770
XspI CTAG 2 cut(s) 212, 527
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.