Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Reverse (-)

47009594 .. 47013111

Gene Structure 3518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCCTCTTGACAGTGATGTGTTTAAAGTCCCTCCAGGCTATAATGCACCTCAACAAGTTCATATAACGCAAGGGGATCATCACGGGAAGGCTGTGATTGTGTCATGGGTGACTATAGATGAACCAGGTTCCAGTACCGTGCTTTACTGGAGCACGAATGGGAAGCAAAAGAAGGCTGAGGGAAAAGTTAAAACCTATAAATTCTACAATTACACTTCCGGTTACATTCACCACACCACCATCAAAAAATTAAAGTTCAATACCAAATATTACTATGTCGTTGGAGCCGACCACTCTGAGCGGCAGTTCTGGTTTATTACTCCTCCTGAAGTTGGGCCAGACGTCCCTTACACATTTGGTCTCATAGGGGATCTGGGTCAGACCTTTGATTCAAACAAGACGCTAACTCATTACGAGCTAAATCCACTGAAAGGAGAGACAATTTTATTTGTTGGTGACCTCTCCTATGCGGATGACTACCCAAATCATGATAATGTCAGATGGGATACATGGGGAAGATTCACAGAGCGAAGTGCTGCTTATCAACCTTGGATATGGACTGCAGGGAATCATGAAATTGATTTTGCCCCAGAAATTGGTGAAAACAAACCTTTTAAACCTTACACTCACCGGTATCATGTCCCACATAAAGCATCAGGCAGTACTGCCCCTTTTTGGTACTCAATCAAGAGAGCTTCGTCCTACATCATCGTCTTAGCTTCATATTCAGCATATGGTAAATACACTCCTCAGTACGTATGGCTCAAGCATGAGCTATCAAAAGTTAATAGAAGTGAGACACCATGGTTGATTGTCTTAATGCATTCCCCATGGTATAATAGCTACAACTATCACTATATGGAAGGAGAAAGCATGAGAGTGATGTTTGAGCCGTGGTTTGTACAGTACAAAGTTGACGTGGTATTTTCTGGTCATGTCCATGCTTATGAACGATCTGAACGCATATCCAATGTTGCATATAACATTACAAATGGTAATTGCATTCCTGTGAAAGATCAATCTGCACCTGTGTACATTACCATTGGGGATGGAGGAAATCTTGAAGGCTTAGCAACCTCCATGACAGAGCCACAGCCAGATTACTCGGCCTATCGAGAGGCCAGTTTTGGTCATGCCATTTTTGACATCAAGAACCGAAGCCATGCTTATTTTAGTTGGCACCGTAATCAAGATGGATATGCTGTAGAAGCTGATTCTATGGTGTTCTTGAATAGATACTTTCATCCTCTTGATGATTCCACAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

424

Amino Acids

48.75

Weight (kDa)

6.39

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	17 - 105	9.5e-19	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	118 - 316	8.7e-27	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	342 - 401	2.1e-19	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	1179
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	301
AciI	CCGC	2 cut(s)	301, 470
AclWI	GGATC	2 cut(s)	84, 378
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	7 cut(s)	136, 664, 680, 755, 903, 908, 1034
AfiI	CCNNNNNNNGG	4 cut(s)	332, 431, 596, 675
AgeI	ACCGGT	1 cut(s)	630
AgsI	TTSAA	4 cut(s)	259, 393, 1064, 1231
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	2 cut(s)	34, 124
AluBI	AGCT	6 cut(s)	418, 695, 719, 775, 843, 1211
AluI	AGCT	6 cut(s)	418, 695, 719, 775, 843, 1211
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	3 cut(s)	365, 431, 791
AlwI	GGATC	2 cut(s)	84, 378
AoxI	GGCC	3 cut(s)	335, 1107, 1119
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	5 cut(s)	121, 221, 467, 611, 620
BanI	GGYRCC	1 cut(s)	1179
Bbv12I	GWGCWC	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	4 cut(s)	248, 495, 1043, 1187
BceAI	ACGGC	1 cut(s)	877
BciT130I	CCWGG	2 cut(s)	36, 126
BciVI	GTATCC	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	365, 431, 791
BfmI	CTRYAG	3 cut(s)	114, 561, 1203
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	2 cut(s)	302, 537
BlpI	GCTNAGC	1 cut(s)	1069
BlsI	GCNGC	2 cut(s)	303, 538
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	2 cut(s)	36, 126
BmgBI	CACGTC	1 cut(s)	919
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	3 cut(s)	130, 286, 1181
BmrFI	CCNGG	2 cut(s)	36, 126
BmsI	GCATC	1 cut(s)	662
BpmI	CTGGAG	2 cut(s)	18, 169
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	1069
BpuEI	CTTGAG	1 cut(s)	749
BsaAI	YACGTR	1 cut(s)	757
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	548, 803, 830, 893
BsaWI	WCCGGW	2 cut(s)	218, 630
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 431, 596, 675
Bse118I	RCCGGY	1 cut(s)	630
Bse1I	ACTGG	3 cut(s)	132, 152, 1122
BseBI	CCWGG	2 cut(s)	36, 126
BseDI	CCNNGG	4 cut(s)	548, 803, 830, 893
BseGI	GGATG	3 cut(s)	478, 1054, 1243
BseLI	CCNNNNNNNGG	4 cut(s)	332, 431, 596, 675
BseMII	CTCAG	3 cut(s)	168, 288, 764
BseNI	ACTGG	3 cut(s)	132, 152, 1122
BseRI	GAGGAG	2 cut(s)	312, 738
BseXI	GCAGC	1 cut(s)	523
BsgI	GTGCAG	1 cut(s)	1008
BshFI	GGCC	3 cut(s)	337, 1109, 1121
BshNI	GGYRCC	1 cut(s)	1179
BshTI	ACCGGT	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	219, 631
BslFI	GGGAC	3 cut(s)	14, 329, 626
BslI	CCNNNNNNNGG	4 cut(s)	332, 431, 596, 675
BsmAI	GTCTC	3 cut(s)	365, 431, 791
BsmFI	GGGAC	3 cut(s)	14, 329, 626
BsmI	GAATGC	2 cut(s)	823, 1002
BsnI	GGCC	3 cut(s)	337, 1109, 1121
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp1407I	TGTACA	2 cut(s)	901, 1032
Bsp143I	GATC	4 cut(s)	76, 370, 953, 1015
Bsp1720I	GCTNAGC	1 cut(s)	1069
Bsp19I	CCATGG	2 cut(s)	803, 830
BspACI	CCGC	2 cut(s)	301, 470
BspANI	GGCC	3 cut(s)	337, 1109, 1121
BspCNI	CTCAG	3 cut(s)	169, 289, 763
BspHI	TCATGA	2 cut(s)	487, 571
BspLI	GGNNCC	3 cut(s)	130, 286, 1181
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	2 cut(s)	84, 378
BspT107I	GGYRCC	1 cut(s)	1179
BspTNI	GGTCTC	1 cut(s)	365
BsrBI	CCGCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	630
BsrGI	TGTACA	2 cut(s)	901, 1032
BsrI	ACTGG	3 cut(s)	132, 152, 1122
BssAI	RCCGGY	1 cut(s)	630
BssECI	CCNNGG	4 cut(s)	548, 803, 830, 893
BssMI	GATC	4 cut(s)	76, 370, 953, 1015
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	3 cut(s)	548, 803, 830
Bst2UI	CCWGG	2 cut(s)	36, 126
Bst4CI	ACNGT	4 cut(s)	14, 139, 906, 1184
BstACI	GRCGYC	1 cut(s)	342
BstAUI	TGTACA	2 cut(s)	901, 1032
BstBAI	YACGTR	1 cut(s)	757
BstDEI	CTNAG	5 cut(s)	177, 297, 715, 750, 1069
BstDSI	CCRYGG	3 cut(s)	803, 830, 893
BstEII	GGTNACC	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	478, 1054, 1243
BstKTI	GATC	4 cut(s)	79, 373, 956, 1018
BstMAI	GTCTC	3 cut(s)	365, 431, 791
BstMBI	GATC	4 cut(s)	76, 370, 953, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	1208
BstNI	CCWGG	2 cut(s)	36, 126
BstPI	GGTNACC	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	34, 124
BstSFI	CTRYAG	3 cut(s)	114, 561, 1203
BstSNI	TACGTA	1 cut(s)	757
BstV1I	GCAGC	1 cut(s)	523
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	337, 1109, 1121
BtgI	CCRYGG	3 cut(s)	803, 830, 893
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	3 cut(s)	478, 1054, 1243
BtsIMutI	CAGTG	2 cut(s)	19, 425
CciI	TCATGA	2 cut(s)	487, 571
Cfr10I	RCCGGY	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	1 cut(s)	409
CsiI	ACCWGGT	1 cut(s)	124
Csp6I	GTAC	7 cut(s)	135, 663, 679, 754, 902, 907, 1033
CspAI	ACCGGT	1 cut(s)	630
CviQI	GTAC	7 cut(s)	135, 663, 679, 754, 902, 907, 1033
DdeI	CTNAG	5 cut(s)	177, 297, 715, 750, 1069
DpnI	GATC	4 cut(s)	78, 372, 955, 1017
DpnII	GATC	4 cut(s)	76, 370, 953, 1015
DraI	TTTAAA	2 cut(s)	25, 616
Eco105I	TACGTA	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	548, 803, 830
Eco31I	GGTCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	348
Eco91I	GGTNACC	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	34, 124
EcoT14I	CCWWGG	3 cut(s)	548, 803, 830
EcoT22I	ATGCAT	1 cut(s)	825
ErhI	CCWWGG	3 cut(s)	548, 803, 830
FalI	AAGNNNNNCTT	4 cut(s)	523, 555, 1150, 1182
FaqI	GGGAC	3 cut(s)	14, 329, 626
FauNDI	CATATG	1 cut(s)	733
Fnu4HI	GCNGC	2 cut(s)	302, 537
FokI	GGATG	3 cut(s)	485, 1061, 1230
Fsp4HI	GCNGC	2 cut(s)	302, 537
GluI	GCNGC	2 cut(s)	302, 537
GsuI	CTGGAG	2 cut(s)	18, 169
HaeIII	GGCC	3 cut(s)	337, 1109, 1121
HapII	CCGG	2 cut(s)	219, 631
HgaI	GACGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HinfI	GANTC	5 cut(s)	389, 519, 568, 1214, 1256
HpaII	CCGG	2 cut(s)	219, 631
HphI	GGTGA	5 cut(s)	121, 221, 467, 611, 620
Hpy166II	GTNNAC	2 cut(s)	916, 1033
Hpy188I	TCNGA	4 cut(s)	298, 381, 500, 958
Hpy8I	GTNNAC	2 cut(s)	916, 1033
HpyAV	CCTTC	4 cut(s)	82, 166, 857, 1058
HpyCH4III	ACNGT	4 cut(s)	14, 139, 906, 1184
HpyCH4IV	ACGT	3 cut(s)	342, 756, 918
HpyCH4V	TGCA	6 cut(s)	47, 563, 823, 977, 1002, 1025
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1208
HpyF3I	CTNAG	5 cut(s)	177, 297, 715, 750, 1069
HpySE526I	ACGT	3 cut(s)	342, 756, 918
Hsp92I	GRCGYC	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	76, 370, 953, 1015
LmnI	GCTCC	2 cut(s)	150, 284
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	1 cut(s)	662
MabI	ACCWGGT	1 cut(s)	124
MaeII	ACGT	3 cut(s)	342, 756, 918
MaeIII	GTNAC	3 cut(s)	109, 221, 455
MalI	GATC	4 cut(s)	78, 372, 955, 1017
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	4 cut(s)	76, 370, 953, 1015
MboII	GAAGA	1 cut(s)	528
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	7 cut(s)	200, 208, 248, 441, 576, 594, 997
MmeI	TCCRAC	1 cut(s)	262
Mph1103I	ATGCAT	1 cut(s)	825
MseI	TTAA	6 cut(s)	24, 189, 251, 615, 786, 818
MslI	CAYNNNNRTG	5 cut(s)	492, 878, 939, 945, 1007
MspI	CCGG	2 cut(s)	219, 631
MspR9I	CCNGG	2 cut(s)	36, 126
Mva1269I	GAATGC	2 cut(s)	823, 1002
MvaI	CCWGG	2 cut(s)	36, 126
MwoI	GCNNNNNNNGC	1 cut(s)	1208
NcoI	CCATGG	2 cut(s)	803, 830
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	4 cut(s)	76, 370, 953, 1015
NlaIV	GGNNCC	3 cut(s)	130, 286, 1181
NmeAIII	GCCGAG	1 cut(s)	1085
NmuCI	GTSAC	2 cut(s)	109, 455
NsiI	ATGCAT	1 cut(s)	825
PagI	TCATGA	2 cut(s)	487, 571
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	2 cut(s)	823, 1002
PfeI	GAWTC	5 cut(s)	389, 519, 568, 1214, 1256
PflMI	CCANNNNNTGG	1 cut(s)	596
PinAI	ACCGGT	1 cut(s)	630
PkrI	GCNGC	2 cut(s)	303, 538
Ppu21I	YACGTR	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	34, 124
PspEI	GGTNACC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	34, 124
PspN4I	GGNNCC	3 cut(s)	130, 286, 1181
PspPI	GGNCC	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	7 cut(s)	136, 664, 680, 755, 903, 908, 1034
RsaNI	GTAC	7 cut(s)	135, 663, 679, 754, 902, 907, 1033
RseI	CAYNNNNRTG	5 cut(s)	492, 878, 939, 945, 1007
SaqAI	TTAA	6 cut(s)	24, 189, 251, 615, 786, 818
SatI	GCNGC	2 cut(s)	302, 537
Sau3AI	GATC	4 cut(s)	76, 370, 953, 1015
Sau96I	GGNCC	1 cut(s)	335
ScaI	AGTACT	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	36, 126
SduI	GDGCHC	1 cut(s)	155
SexAI	ACCWGGT	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	662
SfcI	CTRYAG	3 cut(s)	114, 561, 1203
SmiMI	CAYNNNNRTG	5 cut(s)	492, 878, 939, 945, 1007
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SnaBI	TACGTA	1 cut(s)	757
Sse9I	AATT	7 cut(s)	200, 208, 248, 441, 576, 594, 997
SsiI	CCGC	2 cut(s)	301, 470
SspI	AATATT	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	34, 124
StyI	CCWWGG	3 cut(s)	548, 803, 830
TaaI	ACNGT	4 cut(s)	14, 139, 906, 1184
TaiI	ACGT	3 cut(s)	345, 759, 921
TaqI	TCGA	1 cut(s)	1114
TasI	AATT	7 cut(s)	200, 208, 248, 441, 576, 594, 997
TatI	WGTACW	4 cut(s)	662, 901, 906, 1032
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	5 cut(s)	389, 519, 568, 1214, 1256
Tru1I	TTAA	6 cut(s)	24, 189, 251, 615, 786, 818
Tru9I	TTAA	6 cut(s)	24, 189, 251, 615, 786, 818
TscAI	CASTG	2 cut(s)	19, 432
TseFI	GTSAC	2 cut(s)	109, 455
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	2 cut(s)	109, 455
TspDTI	ATGAA	6 cut(s)	50, 135, 588, 711, 963, 1232
TspRI	CASTG	2 cut(s)	19, 432
Van91I	CCANNNNNTGG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	664
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.