Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000988

Physical Location & Seq

Genomic Coordinates Forward (+)

12200809 .. 12204220

Gene Structure 3412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G088800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGACCAAGATGGGTGTGGTGAGCTTAGCGTCTGCTTCTACTTCTTCAAGTGTAGCTAGTTTTGTAGTTTTGGGTTTGGTTTTGAACTTGGCTGTGGTTTGCAATGGAGGTTTCACAAGCCCTTTTGTGAGGAAAGCTGAGAAGACTGTTGATATGCCTTATGAAAGTGATGCCTTTCAAGTCCCTCATGGCTATAATGCACCTCAACAAGTTCATATAACACAAGGAGACCACAAGGGAAAGGCCATGATTGTGTCATGGGTCACTGTGGATGAAAAAGGCTCCAGCAAAGTGCTTTTCTGGAGTGAAGGTCAAAAGAAAAGGATGGCTGAAGGCAAAGCTAAAACATATACATACCATGATTACACTTCTGGTTACATTCACCACTGTACCATCAGAAACTTAGAGTACAATACCAAATATTACTATGTGGTTGGAATTGGGCACACTGTGAGGCTGTTCTGGTTTGTAACTCCTCCTGAAGTTGGGCCAGATGTCCCTTACACATTTGGTCTCATGGGGGATTTGGGCCAAACCTTTGATTCAAACTTGACACTTACTCACTATGAAGAAAACCCACTTAAGGGACAAACAGTTTTGAACCTTGGAGACCTCTCTTATGCAGATAATCATCCCAATCATGACAATGTTAAGTGGGATACATTTGGAAGATTCATTGAGAGAAGTGCTGCTTATCAACCTTGGATTTGGACTGCAGGGAACCATGAGATTGATTATGCTCCAGAAATTGGTGAATACAAACCTTTCAAGCCATACACTCACCGGTATAATGTCCCACACAAAGCATCAGGGAGCCCTGCCCCCTTTTTTTACTCAATCAAGAGAGCTTCAGCATACATCATAGTCTTGTCTTCATATACAGCTTATGGTAAATACACTCCTCAGTACCAATGGCTTGAGCAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGTTGATTGTCTTACTGCATTCCCCATGGTACAACAGCTACAACTATCATTACATGGAAGGAGAGAGCATGAGAGTCATGTTTGAGTCATGGTTCGTGCAGCACAAGGTTGACGTAGTCTTTGCTGGTCATGTCCATGCCTACGAACGATCTGAACGTGTATCGAATATTGCCTATAACATTGAAAATGGAAAGTGCTCTCCGGTGGTGAAAGATCAATCTGCGCCGGTGTACATTACCATTGGAGATGGAGGAAATATTGAAGGCTTGGCAACCAATATGAGGGAGCCACAGCCAGCTTACTCAGCTTATAGAGAGGCCAGTTTTGGTCATGCCATTTTTGACATCAAGAACCGAACTCATGCCTTCTACAGTTGGCACCGGAACGACGATGGAGTTGCAGTGAAAGCCGATTCTATGTGGTTTTTCAACAGATACCACCATCCTGTTGATGATTCTACAAGTTCCCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

478

Amino Acids

54.31

Weight (kDa)

6.54

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16430 AT2G16430
fragaria_vesca	FvH4_2g09890 FvH4_2g09920 FvH4_2g09920 FvH4_2g09920
malus_domestica	MD05G1058900.v1.1 MD05G1059100.v1.1 MD05G1059300.v1.1 MD06G1221800.v1.1 MD10G1067300.v1.1
prunus_persica	Prupe.8G088800_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G088900_v2.0.a1 Prupe.8G089000_v2.0.a1 Prupe.8G089100_v2.0.a1 Prupe.8G089200_v2.0.a1
pyrus_communis	pycom05g05060 pycom05g05070 pycom10g05330
rosa_chinensis	RchiOBHm_Chr5g0073481 RchiOBHm_Chr6g0266421 RchiOBHm_Chr6g0266561 RchiOBHm_Chr6g0266681
rosa_laevigata	RLG00000014085 RLG00000014091 RLG00000014096
rosa_multiflora	Rmu_sc0003605.1_g000010 Rmu_sc0006413.1_g000013 Rmu_sc0022454.1_g000004 Rmu_sc0023098.1_g000001 Rmu_ssc0000226.1_g000024
rosa_roxburghii	Rroxscaffold_1G00007780 Rroxscaffold_7G00201560 Rroxscaffold_7G00201660
rosa_rugosa	Rorug05G0423800 Rorug06G0025500 Rorug06G0026200
rosa_samantha	Rh5AG481100 Rh5BG501800 Rh5CG525000 Rh5DG514200 Rh6AG146200 Rh6AG146700 Rh6AG147400 Rh6BG146400 Rh6BG147800 Rh6CG142800 Rh6CG143600 Rh6DG131000 Rh6DG132400
rosa_wichuraiana	Rw5G044690 Rw6G012590 Rw6G012600 Rw6G012660 Rw6G012700 Rw6G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1335
AccB7I	CCANNNNNTGG	1 cut(s)	749
AcuI	CTGAAG	3 cut(s)	351, 501, 834
AdeI	CACNNNGTG	1 cut(s)	451
AfaI	GTAC	5 cut(s)	391, 410, 908, 989, 1190
AfiI	CCNNNNNNNGG	5 cut(s)	485, 583, 584, 749, 1239
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	1114
AgeI	ACCGGT	1 cut(s)	783
AgsI	TTSAA	9 cut(s)	48, 85, 179, 546, 601, 769, 1142, 1220, 1387
Alw21I	GWGCWC	1 cut(s)	1157
Alw26I	GTCTC	4 cut(s)	222, 518, 603, 944
AoxI	GGCC	4 cut(s)	243, 488, 529, 1275
ApeKI	GCWGC	2 cut(s)	689, 1057
ArsI	GACNNNNNNTTYG	2 cut(s)	1061, 1093
AsiGI	ACCGGT	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	1183
AspS9I	GGNCC	2 cut(s)	488, 529
AsuHPI	GGTGA	5 cut(s)	31, 374, 764, 773, 1177
BaeGI	GKGCMC	1 cut(s)	447
BaeI	ACNNNNGTAYC	2 cut(s)	373, 406
BanI	GGYRCC	1 cut(s)	1335
BanII	GRGCYC	1 cut(s)	818
BbsI	GAAGAC	2 cut(s)	149, 864
Bbv12I	GWGCWC	1 cut(s)	1157
BbvI	GCAGC	2 cut(s)	676, 1069
BccI	CCATC	6 cut(s)	4, 319, 401, 1199, 1343, 1407
BcgI	CGANNNNNNTGC	2 cut(s)	1337, 1371
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	4 cut(s)	222, 518, 603, 944
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	2 cut(s)	714, 1327
BfrI	CTTAAG	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	2 cut(s)	690, 1058
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	2 cut(s)	691, 1059
BmgT120I	GGNCC	2 cut(s)	488, 529
BmiI	GGNNCC	5 cut(s)	283, 722, 815, 1245, 1337
BmsI	GCATC	2 cut(s)	160, 815
BpiI	GAAGAC	2 cut(s)	149, 864
BpmI	CTGGAG	3 cut(s)	268, 322, 726
Bpu1102I	GCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	938
BsaBI	GATNNNNATC	1 cut(s)	630
BsaI	GGTCTC	3 cut(s)	222, 518, 603
BsaJI	CCNNGG	4 cut(s)	604, 701, 956, 983
BsaWI	WCCGGW	3 cut(s)	783, 1159, 1338
BsaXI	ACNNNNNCTCC	4 cut(s)	295, 325, 1344, 1374
Bsc4I	CCNNNNNNNGG	5 cut(s)	485, 583, 584, 749, 1239
Bse118I	RCCGGY	2 cut(s)	783, 1183
Bse1I	ACTGG	1 cut(s)	1278
Bse3DI	GCAATG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	630
BseDI	CCNNGG	4 cut(s)	604, 701, 956, 983
BseGI	GGATG	4 cut(s)	277, 330, 631, 1399
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	5 cut(s)	485, 583, 584, 749, 1239
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	3 cut(s)	129, 917, 1275
BseNI	ACTGG	1 cut(s)	1278
BseRI	GAGGAG	2 cut(s)	465, 891
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	676, 1069
BsgI	GTGCAG	1 cut(s)	1076
BshFI	GGCC	4 cut(s)	245, 490, 531, 1277
BshNI	GGYRCC	1 cut(s)	1335
BshTI	ACCGGT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	1157
BsiSI	CCGG	4 cut(s)	784, 1160, 1184, 1339
BslFI	GGGAC	4 cut(s)	167, 482, 600, 779
BslI	CCNNNNNNNGG	5 cut(s)	485, 583, 584, 749, 1239
BsmAI	GTCTC	4 cut(s)	222, 518, 603, 944
BsmFI	GGGAC	4 cut(s)	167, 482, 600, 779
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	4 cut(s)	245, 490, 531, 1277
Bso31I	GGTCTC	3 cut(s)	222, 518, 603
Bsp1286I	GDGCHC	3 cut(s)	447, 818, 1157
Bsp1407I	TGTACA	1 cut(s)	1188
Bsp143I	GATC	2 cut(s)	1106, 1171
Bsp1720I	GCTNAGC	1 cut(s)	25
Bsp19I	CCATGG	2 cut(s)	956, 983
BspANI	GGCC	4 cut(s)	245, 490, 531, 1277
BspCNI	CTCAG	3 cut(s)	130, 916, 1274
BspHI	TCATGA	2 cut(s)	640, 1430
BspLI	GGNNCC	5 cut(s)	283, 722, 815, 1245, 1337
BspMAI	CTGCAG	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	1335
BspTI	CTTAAG	1 cut(s)	581
BspTNI	GGTCTC	3 cut(s)	222, 518, 603
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	2 cut(s)	783, 1183
BsrGI	TGTACA	1 cut(s)	1188
BsrI	ACTGG	1 cut(s)	1278
BssAI	RCCGGY	2 cut(s)	783, 1183
BssECI	CCNNGG	4 cut(s)	604, 701, 956, 983
BssMI	GATC	2 cut(s)	1106, 1171
BssT1I	CCWWGG	4 cut(s)	604, 701, 956, 983
Bst4CI	ACNGT	6 cut(s)	148, 268, 389, 451, 595, 1331
BstAFI	CTTAAG	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	1188
BstC8I	GCNNGC	1 cut(s)	1254
BstDEI	CTNAG	5 cut(s)	25, 138, 403, 903, 1261
BstDSI	CCRYGG	2 cut(s)	956, 983
BstF5I	GGATG	4 cut(s)	277, 330, 631, 1399
BstHHI	GCGC	1 cut(s)	1183
BstKTI	GATC	2 cut(s)	1109, 1174
BstMAI	GTCTC	4 cut(s)	222, 518, 603, 944
BstMBI	GATC	2 cut(s)	1106, 1171
BstMWI	GCNNNNNNNGC	2 cut(s)	1262, 1364
BstSFI	CTRYAG	2 cut(s)	714, 1327
BstSLI	GKGCMC	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	676, 1069
BstV2I	GAAGAC	2 cut(s)	149, 864
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	4 cut(s)	245, 490, 531, 1277
BtgI	CCRYGG	2 cut(s)	956, 983
BtsCI	GGATG	4 cut(s)	277, 330, 631, 1399
BtsI	GCAGTG	1 cut(s)	1365
BtsIMutI	CAGTG	4 cut(s)	264, 385, 447, 1365
Cac8I	GCNNGC	1 cut(s)	1254
CciI	TCATGA	2 cut(s)	640, 1430
CfoI	GCGC	1 cut(s)	1183
Cfr10I	RCCGGY	2 cut(s)	783, 1183
Cfr13I	GGNCC	2 cut(s)	488, 529
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	5 cut(s)	390, 409, 907, 988, 1189
CspAI	ACCGGT	1 cut(s)	783
CviQI	GTAC	5 cut(s)	390, 409, 907, 988, 1189
DdeI	CTNAG	5 cut(s)	25, 138, 403, 903, 1261
DpnI	GATC	2 cut(s)	1108, 1173
DpnII	GATC	2 cut(s)	1106, 1171
DraIII	CACNNNGTG	1 cut(s)	451
Eco130I	CCWWGG	4 cut(s)	604, 701, 956, 983
Eco24I	GRGCYC	1 cut(s)	818
Eco31I	GGTCTC	3 cut(s)	222, 518, 603
Eco57I	CTGAAG	3 cut(s)	351, 501, 834
EcoT14I	CCWWGG	4 cut(s)	604, 701, 956, 983
EcoT38I	GRGCYC	1 cut(s)	818
ErhI	CCWWGG	4 cut(s)	604, 701, 956, 983
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FaqI	GGGAC	4 cut(s)	167, 482, 600, 779
Fnu4HI	GCNGC	2 cut(s)	690, 1058
FokI	GGATG	4 cut(s)	284, 337, 618, 1386
FriOI	GRGCYC	1 cut(s)	818
Fsp4HI	GCNGC	2 cut(s)	690, 1058
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	1182
GluI	GCNGC	2 cut(s)	690, 1058
GsuI	CTGGAG	3 cut(s)	268, 322, 726
HaeIII	GGCC	4 cut(s)	245, 490, 531, 1277
HapII	CCGG	4 cut(s)	784, 1160, 1184, 1339
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	1183
Hin6I	GCGC	1 cut(s)	1181
HinP1I	GCGC	1 cut(s)	1181
HincII	GTYRAC	2 cut(s)	940, 1069
HindII	GTYRAC	2 cut(s)	940, 1069
HinfI	GANTC	6 cut(s)	542, 672, 1032, 1043, 1370, 1412
HpaI	GTTAAC	1 cut(s)	940
HpaII	CCGG	4 cut(s)	784, 1160, 1184, 1339
HphI	GGTGA	5 cut(s)	31, 374, 764, 773, 1177
Hpy166II	GTNNAC	3 cut(s)	940, 1069, 1189
Hpy188I	TCNGA	2 cut(s)	398, 1111
Hpy188III	TCNNGA	7 cut(s)	301, 479, 641, 743, 841, 1306, 1431
Hpy8I	GTNNAC	3 cut(s)	940, 1069, 1189
Hpy99I	CGWCG	1 cut(s)	1349
HpyAV	CCTTC	5 cut(s)	302, 326, 1010, 1214, 1333
HpyCH4III	ACNGT	6 cut(s)	148, 268, 389, 451, 595, 1331
HpyCH4IV	ACGT	2 cut(s)	1071, 1114
HpyCH4V	TGCA	7 cut(s)	102, 200, 623, 716, 976, 1057, 1358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1262, 1364
HpyF3I	CTNAG	5 cut(s)	25, 138, 403, 903, 1261
HpySE526I	ACGT	2 cut(s)	1071, 1114
HspAI	GCGC	1 cut(s)	1181
KspAI	GTTAAC	1 cut(s)	940
Kzo9I	GATC	2 cut(s)	1106, 1171
LmnI	GCTCC	5 cut(s)	287, 745, 813, 925, 1243
Lsp1109I	GCAGC	2 cut(s)	676, 1069
LweI	GCATC	2 cut(s)	160, 815
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	1071, 1114
MaeIII	GTNAC	3 cut(s)	262, 374, 469
MalI	GATC	2 cut(s)	1108, 1173
MboI	GATC	2 cut(s)	1106, 1171
MboII	GAAGA	5 cut(s)	36, 154, 581, 681, 864
MhlI	GDGCHC	3 cut(s)	447, 818, 1157
MluCI	AATT	2 cut(s)	438, 747
MlyI	GAGTC	2 cut(s)	1041, 1052
MmeI	TCCRAC	1 cut(s)	415
MseI	TTAA	3 cut(s)	582, 651, 939
MslI	CAYNNNNRTG	3 cut(s)	251, 645, 1092
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	4 cut(s)	784, 1160, 1184, 1339
Mva1269I	GAATGC	1 cut(s)	976
MwoI	GCNNNNNNNGC	2 cut(s)	1262, 1364
NcoI	CCATGG	2 cut(s)	956, 983
NdeII	GATC	2 cut(s)	1106, 1171
NlaIV	GGNNCC	5 cut(s)	283, 722, 815, 1245, 1337
NmuCI	GTSAC	1 cut(s)	262
PagI	TCATGA	2 cut(s)	640, 1430
PcsI	WCGNNNNNNNCGW	1 cut(s)	1111
PctI	GAATGC	1 cut(s)	976
PfeI	GAWTC	4 cut(s)	542, 672, 1370, 1412
PflFI	GACNNNGTC	1 cut(s)	1073
PflMI	CCANNNNNTGG	1 cut(s)	749
PinAI	ACCGGT	1 cut(s)	783
PkrI	GCNGC	2 cut(s)	691, 1059
PleI	GAGTC	2 cut(s)	1040, 1051
PpsI	GAGTC	2 cut(s)	1040, 1051
PspN4I	GGNNCC	5 cut(s)	283, 722, 815, 1245, 1337
PspPI	GGNCC	2 cut(s)	488, 529
PstI	CTGCAG	1 cut(s)	718
PsyI	GACNNNGTC	1 cut(s)	1073
RsaI	GTAC	5 cut(s)	391, 410, 908, 989, 1190
RsaNI	GTAC	5 cut(s)	390, 409, 907, 988, 1189
RseI	CAYNNNNRTG	3 cut(s)	251, 645, 1092
SaqAI	TTAA	3 cut(s)	582, 651, 939
SatI	GCNGC	2 cut(s)	690, 1058
Sau3AI	GATC	2 cut(s)	1106, 1171
Sau96I	GGNCC	2 cut(s)	488, 529
SchI	GAGTC	2 cut(s)	1041, 1052
SduI	GDGCHC	3 cut(s)	447, 818, 1157
SfaNI	GCATC	2 cut(s)	160, 815
SfcI	CTRYAG	2 cut(s)	714, 1327
SgrAI	CRCCGGYG	1 cut(s)	1183
SmiMI	CAYNNNNRTG	3 cut(s)	251, 645, 1092
SmlI	CTYRAG	2 cut(s)	581, 917
SmoI	CTYRAG	2 cut(s)	581, 917
Sse9I	AATT	2 cut(s)	438, 747
SspI	AATATT	3 cut(s)	422, 1126, 1216
SspMI	CTAG	1 cut(s)	57
StyI	CCWWGG	4 cut(s)	604, 701, 956, 983
TaaI	ACNGT	6 cut(s)	148, 268, 389, 451, 595, 1331
TaiI	ACGT	2 cut(s)	1074, 1117
TaqI	TCGA	1 cut(s)	1121
TasI	AATT	2 cut(s)	438, 747
TatI	WGTACW	2 cut(s)	408, 1188
TfiI	GAWTC	4 cut(s)	542, 672, 1370, 1412
Tru1I	TTAA	3 cut(s)	582, 651, 939
Tru9I	TTAA	3 cut(s)	582, 651, 939
TscAI	CASTG	4 cut(s)	271, 392, 454, 1365
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	689, 1057
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	6 cut(s)	177, 203, 288, 582, 664, 864
TspRI	CASTG	4 cut(s)	271, 392, 454, 1365
Tth111I	GACNNNGTC	1 cut(s)	1073
Van91I	CCANNNNNTGG	1 cut(s)	749
Vha464I	CTTAAG	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.