Rw6G012700

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
23233988 .. 23239389
5402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012700.1

Sequence Viewer

Length: 1473 bp
ATGACAAAGTATATCTATGAAATCAAGGGTGCTCTTGATAGTTTGAAGAGAATGGGTGTGTTGGGATTAGCTTGTGCTTCTACTTGGTCCATACAAAGGGTAGCTATATTTGTAGTATTGGGTTTGGTTTTGAACTTGGGTGTGGTGTGTAATGGAGGCAAAACAAGCACTTTTGTGAGGCAAATTAACAGAAGTTTGGATATGCCTCTGGACAGTGATGTGTTTAAAGTCCCTCCAGGCTATAATGCACCTCAACAAGTTCATATAACGCAAGGGGACCGTCACGGGAAGGCTGTGATTGTGTCATGGGTGACTGTAGATGAACCAGGTTCCAGCACCGTGCTTTACTGGAGCACGAATGGGAAGCAAAAGAAGGCTGAGGGAAAAGTTAAAACATATAAATTCTACAATTACACTTCCGGTTACATTCACCACACCACCATCAAAAAATTAAAGTTCAATACCAAATATTACTATGTCGTTGGAGTCGACCACTCTGACCGGCAGTTCTGGTTTACGACTCCTCCTGAAGTTGGGCCAGACGTCCCTTACACATTTGGTCTCATAGGGGATCTGGGTCAGACCTTTGATTCAAACAAGACGCTAACTCATTACGAGCTAAATCCATTGAAAGGAGAGACAATTTTATTTGTTGGCGACCTCTCCTATGCGGATGACTACCCAAATCATGATAATGTCAGATGGGATACATGGGGAAGATTCACAGAGCGAAGTGCTGCTTATCAACCTTGGATATGGACTGCAGGGAATCATGAAATTGATTTTGCCCCAGAAATTGGTGAAACCAGACCTTTTAAACCTTACACTCACCGGTATCATGTCCCACATAAAGCATCAGGGAGTACTGCCCCTTTTTGGTACTCTATCAAGAGAGCTTCGTCCTACATCATCGTCTTAGCTTCATATTCAGCATATGGTAAATACACTCCTCAGTATGTATGGCTCGAGCAGGAGCTATCAAAAGTTAATAGAAGTGAGACACCATGGTTGATTGTCTTAATGCATTCCCCATGGTATAATAGCTACAACTATCACTATATGGAAGGAGAAAGCATGAGAGTGATGTTTGAGCCGTGGTTTGTACAGTACAAAGTTGACGTGGTATTTTCTGGTCATGTCCATGCCTATGAACGATCTGAACGCATATCCAATATTGCATATAACATTACAAATGGTAATTGCATTCCTGTGAAAGATCAATCTGCACCTGTGTACATTACCATTGGGGATGGAGGAAATCTTGAAGGCTTAGCAACCTCCATGACAGAGCCACAGCCAGAGTACTCGGCCTATCGAGAGGCCAGTTTTGGTCATGCCATTTTTGACATCAAGAACCGAAGCCATGCTTACTTTAGTTGGCACCGTAATCAAGATGGATATGCTGTAGAAGCTGATTCTATGGTGTTCTTCAATAGATACTTTCATCCTCTTGATAATTCCACAAGTGCTTGA

Protein Analysis

490

Amino Acids

56.1

Weight (kDa)

7.04

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 84 - 174 2.3e-18 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 185 - 383 1.3e-26 Calcineurin-like phosphoesterase
Metallophos_C PF14008 409 - 468 2.4e-19 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 1380
AccB7I CCANNNNNTGG 1 cut(s) 797
AccI GTMKAC 1 cut(s) 489
AciI CCGC 1 cut(s) 671
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 6 cut(s) 865, 881, 1104, 1109, 1235, 1304
AfiI CCNNNNNNNGG 5 cut(s) 96, 533, 632, 797, 876
AgeI ACCGGT 1 cut(s) 831
AgsI TTSAA 7 cut(s) 46, 133, 460, 594, 631, 1265, 1432
AjiI CACGTC 1 cut(s) 1120
AjnI CCWGG 2 cut(s) 235, 325
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 8 cut(s) 71, 104, 619, 896, 920, 976, 1044, 1412
AluI AGCT 8 cut(s) 71, 104, 619, 896, 920, 976, 1044, 1412
Alw21I GWGCWC 2 cut(s) 34, 356
Alw26I GTCTC 3 cut(s) 566, 632, 992
AlwI GGATC 1 cut(s) 579
Ama87I CYCGRG 1 cut(s) 965
AoxI GGCC 3 cut(s) 536, 1308, 1320
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 1 cut(s) 401
AsiGI ACCGGT 1 cut(s) 831
AspS9I GGNCC 3 cut(s) 87, 277, 536
AsuHPI GGTGA 4 cut(s) 322, 422, 812, 821
AvaI CYCGRG 1 cut(s) 965
AvaII GGWCC 2 cut(s) 87, 277
BanI GGYRCC 1 cut(s) 1380
Bbv12I GWGCWC 2 cut(s) 34, 356
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 724
BccI CCATC 4 cut(s) 449, 696, 1244, 1388
BceAI ACGGC 1 cut(s) 1078
BciT130I CCWGG 2 cut(s) 237, 327
BciVI GTATCC 1 cut(s) 700
BcoDI GTCTC 3 cut(s) 566, 632, 992
BfmI CTRYAG 3 cut(s) 315, 762, 1404
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 1 cut(s) 738
BlpI GCTNAGC 1 cut(s) 1270
BlsI GCNGC 1 cut(s) 739
BmcAI AGTACT 2 cut(s) 865, 1304
Bme1390I CCNGG 2 cut(s) 237, 327
Bme18I GGWCC 2 cut(s) 87, 277
BmeT110I CYCGRG 1 cut(s) 965
BmgBI CACGTC 1 cut(s) 1120
BmgT120I GGNCC 3 cut(s) 87, 277, 536
BmiI GGNNCC 3 cut(s) 278, 331, 1382
BmrFI CCNGG 2 cut(s) 237, 327
BmsI GCATC 1 cut(s) 863
BpmI CTGGAG 2 cut(s) 219, 370
Bpu10I CCTNAGC 1 cut(s) 378
Bpu1102I GCTNAGC 1 cut(s) 1270
BsaHI GRCGYC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 4 cut(s) 749, 1004, 1031, 1094
BsaWI WCCGGW 2 cut(s) 419, 831
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 533, 632, 797, 876
Bse118I RCCGGY 2 cut(s) 501, 831
Bse1I ACTGG 2 cut(s) 353, 1323
BseBI CCWGG 2 cut(s) 237, 327
BseDI CCNNGG 4 cut(s) 749, 1004, 1031, 1094
BseGI GGATG 3 cut(s) 679, 1255, 1444
BseLI CCNNNNNNNGG 5 cut(s) 96, 533, 632, 797, 876
BseMII CTCAG 2 cut(s) 369, 965
BseNI ACTGG 2 cut(s) 353, 1323
BseRI GAGGAG 2 cut(s) 513, 939
BseXI GCAGC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 1209
BshFI GGCC 3 cut(s) 538, 1310, 1322
BshNI GGYRCC 1 cut(s) 1380
BshTI ACCGGT 1 cut(s) 831
BsiHKAI GWGCWC 2 cut(s) 34, 356
BsiHKCI CYCGRG 1 cut(s) 965
BsiSI CCGG 3 cut(s) 420, 502, 832
BslFI GGGAC 4 cut(s) 215, 290, 530, 827
BslI CCNNNNNNNGG 5 cut(s) 96, 533, 632, 797, 876
BsmAI GTCTC 3 cut(s) 566, 632, 992
BsmFI GGGAC 4 cut(s) 215, 290, 530, 827
BsmI GAATGC 2 cut(s) 1024, 1203
BsnI GGCC 3 cut(s) 538, 1310, 1322
Bso31I GGTCTC 1 cut(s) 566
BsoBI CYCGRG 1 cut(s) 965
Bsp1286I GDGCHC 2 cut(s) 34, 356
Bsp1407I TGTACA 2 cut(s) 1102, 1233
Bsp143I GATC 3 cut(s) 571, 1154, 1216
Bsp1720I GCTNAGC 1 cut(s) 1270
Bsp19I CCATGG 2 cut(s) 1004, 1031
BspACI CCGC 1 cut(s) 671
BspANI GGCC 3 cut(s) 538, 1310, 1322
BspCNI CTCAG 2 cut(s) 370, 964
BspHI TCATGA 2 cut(s) 688, 772
BspLI GGNNCC 3 cut(s) 278, 331, 1382
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 1380
BspTNI GGTCTC 1 cut(s) 566
BsrFI RCCGGY 2 cut(s) 501, 831
BsrGI TGTACA 2 cut(s) 1102, 1233
BsrI ACTGG 2 cut(s) 353, 1323
BssAI RCCGGY 2 cut(s) 501, 831
BssECI CCNNGG 4 cut(s) 749, 1004, 1031, 1094
BssMI GATC 3 cut(s) 571, 1154, 1216
BssNI GRCGYC 1 cut(s) 543
BssT1I CCWWGG 3 cut(s) 749, 1004, 1031
Bst2UI CCWGG 2 cut(s) 237, 327
Bst4CI ACNGT 6 cut(s) 215, 281, 316, 340, 1107, 1385
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 543
BstAUI TGTACA 2 cut(s) 1102, 1233
BstDEI CTNAG 4 cut(s) 378, 916, 951, 1270
BstDSI CCRYGG 3 cut(s) 1004, 1031, 1094
BstF5I GGATG 3 cut(s) 679, 1255, 1444
BstKTI GATC 3 cut(s) 574, 1157, 1219
BstMAI GTCTC 3 cut(s) 566, 632, 992
BstMBI GATC 3 cut(s) 571, 1154, 1216
BstMWI GCNNNNNNNGC 2 cut(s) 165, 1409
BstNI CCWGG 2 cut(s) 237, 327
BstSCI CCNGG 2 cut(s) 235, 325
BstSFI CTRYAG 3 cut(s) 315, 762, 1404
BstV1I GCAGC 1 cut(s) 724
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 3 cut(s) 538, 1310, 1322
BtgI CCRYGG 3 cut(s) 1004, 1031, 1094
BtrI CACGTC 1 cut(s) 1120
BtsCI GGATG 3 cut(s) 679, 1255, 1444
BtsIMutI CAGTG 1 cut(s) 220
CciI TCATGA 2 cut(s) 688, 772
Cfr10I RCCGGY 2 cut(s) 501, 831
Cfr13I GGNCC 3 cut(s) 87, 277, 536
CseI GACGC 1 cut(s) 610
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 6 cut(s) 864, 880, 1103, 1108, 1234, 1303
CspAI ACCGGT 1 cut(s) 831
CviQI GTAC 6 cut(s) 864, 880, 1103, 1108, 1234, 1303
DdeI CTNAG 4 cut(s) 378, 916, 951, 1270
DpnI GATC 3 cut(s) 573, 1156, 1218
DpnII GATC 3 cut(s) 571, 1154, 1216
DraI TTTAAA 2 cut(s) 226, 817
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 3 cut(s) 749, 1004, 1031
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 87, 277
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 965
EcoRII CCWGG 2 cut(s) 235, 325
EcoT14I CCWWGG 3 cut(s) 749, 1004, 1031
EcoT22I ATGCAT 1 cut(s) 1026
ErhI CCWWGG 3 cut(s) 749, 1004, 1031
FalI AAGNNNNNCTT 4 cut(s) 724, 756, 1351, 1383
FaqI GGGAC 4 cut(s) 215, 290, 530, 827
FauNDI CATATG 1 cut(s) 934
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 3 cut(s) 686, 1262, 1431
Fsp4HI GCNGC 1 cut(s) 738
GluI GCNGC 1 cut(s) 738
GsuI CTGGAG 2 cut(s) 219, 370
HaeIII GGCC 3 cut(s) 538, 1310, 1322
HapII CCGG 3 cut(s) 420, 502, 832
HgaI GACGC 1 cut(s) 610
Hin1I GRCGYC 1 cut(s) 543
HincII GTYRAC 2 cut(s) 490, 1117
HindII GTYRAC 2 cut(s) 490, 1117
HinfI GANTC 6 cut(s) 486, 520, 590, 720, 769, 1415
HpaII CCGG 3 cut(s) 420, 502, 832
HphI GGTGA 4 cut(s) 322, 422, 812, 821
Hpy166II GTNNAC 4 cut(s) 490, 516, 1117, 1234
Hpy188I TCNGA 4 cut(s) 499, 582, 701, 1159
Hpy8I GTNNAC 4 cut(s) 490, 516, 1117, 1234
HpyAV CCTTC 4 cut(s) 283, 367, 1058, 1259
HpyCH4III ACNGT 6 cut(s) 215, 281, 316, 340, 1107, 1385
HpyCH4IV ACGT 2 cut(s) 543, 1119
HpyCH4V TGCA 6 cut(s) 248, 764, 1024, 1178, 1203, 1226
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 1409
HpyF3I CTNAG 4 cut(s) 378, 916, 951, 1270
HpySE526I ACGT 2 cut(s) 543, 1119
Hsp92I GRCGYC 1 cut(s) 543
Kzo9I GATC 3 cut(s) 571, 1154, 1216
LmnI GCTCC 2 cut(s) 351, 973
Lsp1109I GCAGC 1 cut(s) 724
LweI GCATC 1 cut(s) 863
MabI ACCWGGT 1 cut(s) 325
MaeII ACGT 2 cut(s) 543, 1119
MaeIII GTNAC 3 cut(s) 281, 310, 422
MalI GATC 3 cut(s) 573, 1156, 1218
MboI GATC 3 cut(s) 571, 1154, 1216
MboII GAAGA 3 cut(s) 58, 729, 1420
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 2 cut(s) 34, 356
MluCI AATT 9 cut(s) 183, 401, 409, 449, 642, 777, 795, 1198, 1456
MlyI GAGTC 2 cut(s) 495, 514
MmeI TCCRAC 1 cut(s) 463
Mph1103I ATGCAT 1 cut(s) 1026
MseI TTAA 7 cut(s) 186, 225, 390, 452, 816, 987, 1019
MslI CAYNNNNRTG 6 cut(s) 173, 693, 1079, 1140, 1146, 1208
MspI CCGG 3 cut(s) 420, 502, 832
MspR9I CCNGG 2 cut(s) 237, 327
Mva1269I GAATGC 2 cut(s) 1024, 1203
MvaI CCWGG 2 cut(s) 237, 327
MwoI GCNNNNNNNGC 2 cut(s) 165, 1409
NcoI CCATGG 2 cut(s) 1004, 1031
NdeI CATATG 1 cut(s) 934
NdeII GATC 3 cut(s) 571, 1154, 1216
NlaIV GGNNCC 3 cut(s) 278, 331, 1382
NmeAIII GCCGAG 1 cut(s) 1286
NmuCI GTSAC 2 cut(s) 281, 310
NsiI ATGCAT 1 cut(s) 1026
OliI CACNNNNGTG 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 965
PagI TCATGA 2 cut(s) 688, 772
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PctI GAATGC 2 cut(s) 1024, 1203
PfeI GAWTC 4 cut(s) 590, 720, 769, 1415
PflMI CCANNNNNTGG 1 cut(s) 797
PinAI ACCGGT 1 cut(s) 831
PkrI GCNGC 1 cut(s) 739
PleI GAGTC 2 cut(s) 494, 514
PpsI GAGTC 2 cut(s) 494, 514
Psp6I CCWGG 2 cut(s) 235, 325
PspGI CCWGG 2 cut(s) 235, 325
PspN4I GGNNCC 3 cut(s) 278, 331, 1382
PspPI GGNCC 3 cut(s) 87, 277, 536
PspXI VCTCGAGB 1 cut(s) 965
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 6 cut(s) 865, 881, 1104, 1109, 1235, 1304
RsaNI GTAC 6 cut(s) 864, 880, 1103, 1108, 1234, 1303
RseI CAYNNNNRTG 6 cut(s) 173, 693, 1079, 1140, 1146, 1208
SalI GTCGAC 1 cut(s) 488
SaqAI TTAA 7 cut(s) 186, 225, 390, 452, 816, 987, 1019
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 3 cut(s) 571, 1154, 1216
Sau96I GGNCC 3 cut(s) 87, 277, 536
ScaI AGTACT 2 cut(s) 865, 1304
SchI GAGTC 2 cut(s) 495, 514
ScrFI CCNGG 2 cut(s) 237, 327
SduI GDGCHC 2 cut(s) 34, 356
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 1 cut(s) 863
SfcI CTRYAG 3 cut(s) 315, 762, 1404
Sfr274I CTCGAG 1 cut(s) 965
SinI GGWCC 2 cut(s) 87, 277
SlaI CTCGAG 1 cut(s) 965
SmiMI CAYNNNNRTG 6 cut(s) 173, 693, 1079, 1140, 1146, 1208
SmlI CTYRAG 1 cut(s) 965
SmoI CTYRAG 1 cut(s) 965
Sse9I AATT 9 cut(s) 183, 401, 409, 449, 642, 777, 795, 1198, 1456
SsiI CCGC 1 cut(s) 671
SspI AATATT 2 cut(s) 470, 1174
StyD4I CCNGG 2 cut(s) 235, 325
StyI CCWWGG 3 cut(s) 749, 1004, 1031
TaaI ACNGT 6 cut(s) 215, 281, 316, 340, 1107, 1385
TaiI ACGT 2 cut(s) 546, 1122
TaqI TCGA 3 cut(s) 489, 966, 1315
TasI AATT 9 cut(s) 183, 401, 409, 449, 642, 777, 795, 1198, 1456
TatI WGTACW 5 cut(s) 863, 1102, 1107, 1233, 1302
TfiI GAWTC 4 cut(s) 590, 720, 769, 1415
Tru1I TTAA 7 cut(s) 186, 225, 390, 452, 816, 987, 1019
Tru9I TTAA 7 cut(s) 186, 225, 390, 452, 816, 987, 1019
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 281, 310
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 2 cut(s) 281, 310
TspDTI ATGAA 7 cut(s) 33, 251, 336, 789, 912, 1164, 1433
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 797
VpaK11BI GGWCC 2 cut(s) 87, 277
XapI RAATTY 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 489
ZraI GACGTC 1 cut(s) 544
ZrmI AGTACT 2 cut(s) 865, 1304
Zsp2I ATGCAT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.