Rw6G012600

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
23059363 .. 23063034
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012600.1

Sequence Viewer

Length: 1362 bp
ATGGGTGTGTTGGGATTAGCTTGTGCTTCTACTTGGTCCATACAAAGGGTAGCTATATTTGTAGTATTGGGTTTGGTTTTGAACTTGGGTGTGGTGTGTAATGGAGGAAAAACAGGCACTTTTGTGAGCCAAATTAACAGAAGTTTGGATATGCCTCTGGACAGTGATGTGTTTAAAGGGACCGTCACGTACGGGAAGGCTGTGATTGTGTCATGGGTGACTGTAGATGAACCAGGTTCCAGCACCGTGCTTTACAGGAGCACGAATGGGAAGCAAAAGAAGGCTGAGGGAAAAGTTAAAACCTATAAATTCTACAATTACACTTCCGGTTACATTCACCACACCACCATAAAAAAATTAAAGTTCAATACCAAATATTACTATGTCGTTGGAGTCGACCACTCTGAGCGGCAGTTCTGGTTTACGACTCCTCCTGAAGTTGGGCCAGACGTCCCTTACACCTTTGGTCTCATAGGGGATCTGGGTCAGACCTTTGATTCAAACAAGACGCTAACTCATTACGAGCTAAATCCACTGAAAGGAGAGACAATTTTATTTGTTGGCGACCTCTCCTATGCGGATGACTACCCAAATCATGATAATGTCAGATGGGATACATGGGGAAGATTCACAGAGCGAAGTGCTGCTTATCAACCTTGGATATGGACTGCAGGGAGTTATGAAATTGATTTTGCCCCAGAAATTGGTGAAACCAAACCTTTTAAACCTTACACTCACCGGTATCATGTCCCACATAAAGCATCAGGGAGTACTGCCCCTTTTTGGTACTCAATCAAGAGAGCTTCGTCCTACATCATCGTCTTAGCTTCATATTCAGCATATGGTAAATACACTCCTCAGTACGTATGGCTCGAGCAGGAGCTATCAAAAGTTAATAGAAGTGAGACACCATGGTTGATTGTCTTAATGCATTCCCCATGGTATAATAGCTACAACTATCACTATATGGAAGGAGAAAGCATGAGAGTGATGTTTGAGCCGCAGTTTGTACAGTACAAAGTTGACGTGGTATTTTCTGGTCATGTCCATGCCTATGAACGATCTGAACGCATATCCAATGTTGCATATAACATTACAAATGGTAATTGCATTCCTGTGAAAGATCAATCTTCACCTGTGTACATTACCATTGGGGATGGAGGAAATCTCGAAGGCTTACCACAGCCAGCGTACTCGGCCTATCGAGAGGCCAGTTTTGGTCATGCCATTTTTGACATCAAGAACCGAAGCCATGCTTATTTTAGTTGGCACCGTAATCAAGATGGATATGCTGTAGAAGCTGATTCTATGGTGTTCTTGAATAGATACTTTCATCCTCTTGATGATTCCACAAGTGCTTGA

Protein Analysis

453

Amino Acids

51.6

Weight (kDa)

6.76

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 66 - 143 7e-15 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 154 - 352 3.3e-22 Calcineurin-like phosphoesterase
Metallophos_C PF14008 378 - 431 1.1e-16 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 1269
AccB7I CCANNNNNTGG 1 cut(s) 704
AccBSI CCGCTC 1 cut(s) 409
AccI GTMKAC 1 cut(s) 396
AciI CCGC 3 cut(s) 409, 578, 1001
AclWI GGATC 1 cut(s) 486
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 8 cut(s) 191, 772, 788, 863, 1011, 1016, 1142, 1193
AfiI CCNNNNNNNGG 5 cut(s) 45, 440, 539, 704, 783
AgeI ACCGGT 1 cut(s) 738
AgsI TTSAA 4 cut(s) 82, 367, 501, 1321
AjiI CACGTC 1 cut(s) 1027
AjnI CCWGG 1 cut(s) 232
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 8 cut(s) 20, 53, 526, 803, 827, 883, 951, 1301
AluI AGCT 8 cut(s) 20, 53, 526, 803, 827, 883, 951, 1301
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 3 cut(s) 473, 539, 899
AlwI GGATC 1 cut(s) 486
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 3 cut(s) 443, 1197, 1209
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 738
AspS9I GGNCC 3 cut(s) 36, 180, 443
AsuHPI GGTGA 5 cut(s) 229, 329, 719, 728, 1125
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 2 cut(s) 36, 180
BanI GGYRCC 1 cut(s) 1269
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 631
BccI CCATC 3 cut(s) 603, 1151, 1277
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 607
BcoDI GTCTC 3 cut(s) 473, 539, 899
BfmI CTRYAG 3 cut(s) 222, 669, 1293
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 3 cut(s) 410, 645, 1001
BlsI GCNGC 3 cut(s) 411, 646, 1002
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 2 cut(s) 36, 180
BmeT110I CYCGRG 1 cut(s) 872
BmgBI CACGTC 1 cut(s) 1027
BmgT120I GGNCC 3 cut(s) 36, 180, 443
BmiI GGNNCC 3 cut(s) 181, 238, 1271
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 770
BplI GAGNNNNNCTC 2 cut(s) 1152, 1184
Bpu10I CCTNAGC 1 cut(s) 285
BsaAI YACGTR 2 cut(s) 189, 865
BsaHI GRCGYC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 656, 911, 938
BsaWI WCCGGW 2 cut(s) 326, 738
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 440, 539, 704, 783
Bse118I RCCGGY 1 cut(s) 738
Bse1I ACTGG 1 cut(s) 1212
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 656, 911, 938
BseGI GGATG 3 cut(s) 586, 1162, 1333
BseLI CCNNNNNNNGG 5 cut(s) 45, 440, 539, 704, 783
BseMII CTCAG 3 cut(s) 276, 396, 872
BseNI ACTGG 1 cut(s) 1212
BseRI GAGGAG 2 cut(s) 420, 846
BseXI GCAGC 1 cut(s) 631
BshFI GGCC 3 cut(s) 445, 1199, 1211
BshNI GGYRCC 1 cut(s) 1269
BshTI ACCGGT 1 cut(s) 738
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 2 cut(s) 327, 739
BsiWI CGTACG 1 cut(s) 189
BslFI GGGAC 3 cut(s) 193, 437, 734
BslI CCNNNNNNNGG 5 cut(s) 45, 440, 539, 704, 783
BsmAI GTCTC 3 cut(s) 473, 539, 899
BsmFI GGGAC 3 cut(s) 193, 437, 734
BsmI GAATGC 2 cut(s) 931, 1110
BsnI GGCC 3 cut(s) 445, 1199, 1211
Bso31I GGTCTC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 872
Bsp1286I GDGCHC 1 cut(s) 263
Bsp1407I TGTACA 2 cut(s) 1009, 1140
Bsp143I GATC 3 cut(s) 478, 1061, 1123
Bsp19I CCATGG 2 cut(s) 911, 938
BspACI CCGC 3 cut(s) 409, 578, 1001
BspANI GGCC 3 cut(s) 445, 1199, 1211
BspCNI CTCAG 3 cut(s) 277, 397, 871
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 3 cut(s) 181, 238, 1271
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 1269
BspTNI GGTCTC 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 409
BsrFI RCCGGY 1 cut(s) 738
BsrGI TGTACA 2 cut(s) 1009, 1140
BsrI ACTGG 1 cut(s) 1212
BssAI RCCGGY 1 cut(s) 738
BssECI CCNNGG 3 cut(s) 656, 911, 938
BssMI GATC 3 cut(s) 478, 1061, 1123
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 3 cut(s) 656, 911, 938
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 6 cut(s) 164, 184, 223, 247, 1014, 1274
BstACI GRCGYC 1 cut(s) 450
BstAUI TGTACA 2 cut(s) 1009, 1140
BstBAI YACGTR 2 cut(s) 189, 865
BstC8I GCNNGC 1 cut(s) 1188
BstDEI CTNAG 4 cut(s) 285, 405, 823, 858
BstDSI CCRYGG 2 cut(s) 911, 938
BstF5I GGATG 3 cut(s) 586, 1162, 1333
BstKTI GATC 3 cut(s) 481, 1064, 1126
BstMAI GTCTC 3 cut(s) 473, 539, 899
BstMBI GATC 3 cut(s) 478, 1061, 1123
BstMWI GCNNNNNNNGC 2 cut(s) 1196, 1298
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 3 cut(s) 222, 669, 1293
BstSNI TACGTA 1 cut(s) 865
BstV1I GCAGC 1 cut(s) 631
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 3 cut(s) 445, 1199, 1211
BtgI CCRYGG 2 cut(s) 911, 938
BtrI CACGTC 1 cut(s) 1027
BtsCI GGATG 3 cut(s) 586, 1162, 1333
BtsIMutI CAGTG 2 cut(s) 169, 533
Cac8I GCNNGC 1 cut(s) 1188
CciI TCATGA 1 cut(s) 595
Cfr10I RCCGGY 1 cut(s) 738
Cfr13I GGNCC 3 cut(s) 36, 180, 443
CseI GACGC 1 cut(s) 517
CsiI ACCWGGT 1 cut(s) 232
Csp6I GTAC 8 cut(s) 190, 771, 787, 862, 1010, 1015, 1141, 1192
CspAI ACCGGT 1 cut(s) 738
CviQI GTAC 8 cut(s) 190, 771, 787, 862, 1010, 1015, 1141, 1192
DdeI CTNAG 4 cut(s) 285, 405, 823, 858
DpnI GATC 3 cut(s) 480, 1063, 1125
DpnII GATC 3 cut(s) 478, 1061, 1123
DraI TTTAAA 2 cut(s) 175, 724
Eco105I TACGTA 1 cut(s) 865
Eco130I CCWWGG 3 cut(s) 656, 911, 938
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 36, 180
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 872
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 3 cut(s) 656, 911, 938
EcoT22I ATGCAT 1 cut(s) 933
ErhI CCWWGG 3 cut(s) 656, 911, 938
FalI AAGNNNNNCTT 4 cut(s) 631, 663, 1240, 1272
FaqI GGGAC 3 cut(s) 193, 437, 734
FauNDI CATATG 1 cut(s) 841
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 3 cut(s) 410, 645, 1001
FokI GGATG 3 cut(s) 593, 1169, 1320
Fsp4HI GCNGC 3 cut(s) 410, 645, 1001
GluI GCNGC 3 cut(s) 410, 645, 1001
HaeIII GGCC 3 cut(s) 445, 1199, 1211
HapII CCGG 2 cut(s) 327, 739
HgaI GACGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 450
HincII GTYRAC 2 cut(s) 397, 1024
HindII GTYRAC 2 cut(s) 397, 1024
HinfI GANTC 6 cut(s) 393, 427, 497, 627, 1304, 1346
HpaII CCGG 2 cut(s) 327, 739
HphI GGTGA 5 cut(s) 229, 329, 719, 728, 1125
Hpy166II GTNNAC 4 cut(s) 397, 423, 1024, 1141
Hpy188I TCNGA 4 cut(s) 406, 489, 608, 1066
Hpy8I GTNNAC 4 cut(s) 397, 423, 1024, 1141
HpyAV CCTTC 4 cut(s) 190, 274, 965, 1166
HpyCH4III ACNGT 6 cut(s) 164, 184, 223, 247, 1014, 1274
HpyCH4IV ACGT 4 cut(s) 188, 450, 864, 1026
HpyCH4V TGCA 4 cut(s) 671, 931, 1085, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 1196, 1298
HpyF3I CTNAG 4 cut(s) 285, 405, 823, 858
HpySE526I ACGT 4 cut(s) 188, 450, 864, 1026
Hsp92I GRCGYC 1 cut(s) 450
Kzo9I GATC 3 cut(s) 478, 1061, 1123
LmnI GCTCC 2 cut(s) 258, 880
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 1 cut(s) 770
MabI ACCWGGT 1 cut(s) 232
MaeII ACGT 4 cut(s) 188, 450, 864, 1026
MaeIII GTNAC 3 cut(s) 184, 217, 329
MalI GATC 3 cut(s) 480, 1063, 1125
MbiI CCGCTC 1 cut(s) 409
MboI GATC 3 cut(s) 478, 1061, 1123
MboII GAAGA 2 cut(s) 636, 1122
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 8 cut(s) 132, 308, 316, 356, 549, 684, 702, 1105
MlyI GAGTC 2 cut(s) 402, 421
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 9 cut(s) 98, 165, 280, 441, 578, 867, 1154, 1201, 1347
Mph1103I ATGCAT 1 cut(s) 933
MseI TTAA 7 cut(s) 135, 174, 297, 359, 723, 894, 926
MslI CAYNNNNRTG 6 cut(s) 122, 600, 986, 1047, 1053, 1115
MspI CCGG 2 cut(s) 327, 739
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 931, 1110
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 1196, 1298
NcoI CCATGG 2 cut(s) 911, 938
NdeI CATATG 1 cut(s) 841
NdeII GATC 3 cut(s) 478, 1061, 1123
NlaIV GGNNCC 3 cut(s) 181, 238, 1271
NmeAIII GCCGAG 1 cut(s) 1175
NmuCI GTSAC 2 cut(s) 184, 217
NsiI ATGCAT 1 cut(s) 933
OliI CACNNNNGTG 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 872
PagI TCATGA 1 cut(s) 595
PcsI WCGNNNNNNNCGW 2 cut(s) 393, 870
PctI GAATGC 2 cut(s) 931, 1110
PfeI GAWTC 4 cut(s) 497, 627, 1304, 1346
Pfl23II CGTACG 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 738
PkrI GCNGC 3 cut(s) 411, 646, 1002
PleI GAGTC 2 cut(s) 401, 421
PpsI GAGTC 2 cut(s) 401, 421
Ppu21I YACGTR 2 cut(s) 189, 865
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspLI CGTACG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 181, 238, 1271
PspPI GGNCC 3 cut(s) 36, 180, 443
PspXI VCTCGAGB 1 cut(s) 872
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 8 cut(s) 191, 772, 788, 863, 1011, 1016, 1142, 1193
RsaNI GTAC 8 cut(s) 190, 771, 787, 862, 1010, 1015, 1141, 1192
RseI CAYNNNNRTG 6 cut(s) 122, 600, 986, 1047, 1053, 1115
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 7 cut(s) 135, 174, 297, 359, 723, 894, 926
SatI GCNGC 3 cut(s) 410, 645, 1001
Sau3AI GATC 3 cut(s) 478, 1061, 1123
Sau96I GGNCC 3 cut(s) 36, 180, 443
ScaI AGTACT 1 cut(s) 772
SchI GAGTC 2 cut(s) 402, 421
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 263
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 1 cut(s) 770
SfcI CTRYAG 3 cut(s) 222, 669, 1293
Sfr274I CTCGAG 1 cut(s) 872
SinI GGWCC 2 cut(s) 36, 180
SlaI CTCGAG 1 cut(s) 872
SmiMI CAYNNNNRTG 6 cut(s) 122, 600, 986, 1047, 1053, 1115
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SnaBI TACGTA 1 cut(s) 865
Sse9I AATT 8 cut(s) 132, 308, 316, 356, 549, 684, 702, 1105
SsiI CCGC 3 cut(s) 409, 578, 1001
SspI AATATT 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 3 cut(s) 656, 911, 938
TaaI ACNGT 6 cut(s) 164, 184, 223, 247, 1014, 1274
TaiI ACGT 4 cut(s) 191, 453, 867, 1029
TaqI TCGA 4 cut(s) 396, 873, 1170, 1204
TasI AATT 8 cut(s) 132, 308, 316, 356, 549, 684, 702, 1105
TatI WGTACW 4 cut(s) 770, 1009, 1014, 1140
TauI GCSGC 2 cut(s) 412, 1003
TfiI GAWTC 4 cut(s) 497, 627, 1304, 1346
Tru1I TTAA 7 cut(s) 135, 174, 297, 359, 723, 894, 926
Tru9I TTAA 7 cut(s) 135, 174, 297, 359, 723, 894, 926
TscAI CASTG 2 cut(s) 169, 540
TseFI GTSAC 2 cut(s) 184, 217
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 2 cut(s) 184, 217
TspDTI ATGAA 5 cut(s) 243, 696, 819, 1071, 1322
TspRI CASTG 2 cut(s) 169, 540
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 2 cut(s) 36, 180
XapI RAATTY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 872
XmiI GTMKAC 1 cut(s) 396
ZraI GACGTC 1 cut(s) 451
ZrmI AGTACT 1 cut(s) 772
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.