FvH4_2g10900

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003809
Physical Location & Seq
Reverse (-)
9552221 .. 9563564
11344 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10900.t6

Sequence Viewer

Length: 1266 bp
ATGGTTTCTTCAGAGATAGAAATAGTTTCCTCGTCGTCTTCGGACTCAAAACCCCAAAACCCTCCCGCCGTCGCCGTCGAGGTCCCTATCATCGACGTCTACTCCGCCTCTGCTTACGGCGATTTCCAGAAACTCCGCAAGTTCGTCGAGGAAGACGGCGCCTCTCTCTCCAGTCCTGACGCCAATGGCTACTACGCTCTCCATTGGGCTGCCCTCAACAACTTCCCTGATCTCGCGCACTACATCATTCAGCATGGCGGTGATGTCAATGCCACTGAGAATATACAGCAGACTGCATTGCATTGGGCAGCCGTGCAGGGTGCAATCGCAGCAGCCGATGTGCTCTTGCAGAATGGAGCTCGGGTTGAGGCTGCTGATGTCAATGGCTACCGGGCAGTTCATGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATTGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAACGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGATACAGTCCGGTTGCTTCTTTTTAGAGATGCAAGCCAAGGCAGGCAGGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATTTGGAGGTTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAGTTAATGGTGAAAGACAATGCTGGTTTCACTCCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTTTCTAGCCAGCAGCAGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCAGATATTGGTTATGCTCCTATCTTGTTGTGCACAATAATCATTCAAACAGTTCTCTTCATGAACTCAGTTGTTGCAGCTCCTAATCTGACAAAGGTTACTGCCGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTCTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGACCAGGGGACCTGGGCAGTCATATAGATACAGAGGATCCTCTGTTGAATATTGATATGAACAATTCATCTGTATGGACAGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGTACCTCATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGGAAGGGTTTTTATATCGAGGAAGTTGATCTGGATGTTCAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

422

Amino Acids

46.03

Weight (kDa)

5.86

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 36 - 125 2.2e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 100 - 145 4.1e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 126 - 192 3e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 190 - 252 6.7e-09 Ankyrin repeats (3 copies)
DHHC PF01529 368 - 411 8.1e-19 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 236
AciI CCGC 5 cut(s) 66, 105, 136, 258, 915
AclWI GGATC 3 cut(s) 989, 1043, 1056
AcsI RAATTY 2 cut(s) 622, 792
AcyI GRCGYC 3 cut(s) 96, 159, 180
AfaI GTAC 2 cut(s) 592, 1156
AfiI CCNNNNNNNGG 1 cut(s) 763
AgsI TTSAA 4 cut(s) 436, 857, 1060, 1259
AjnI CCWGG 4 cut(s) 997, 1015, 1023, 1199
AluBI AGCT 3 cut(s) 359, 890, 941
AluI AGCT 3 cut(s) 359, 890, 941
Alw21I GWGCWC 3 cut(s) 345, 361, 845
Alw26I GTCTC 1 cut(s) 1107
Alw44I GTGCAC 1 cut(s) 841
AlwI GGATC 3 cut(s) 989, 1043, 1056
Ama87I CYCGRG 1 cut(s) 360
ApaLI GTGCAC 1 cut(s) 841
ApoI RAATTY 2 cut(s) 622, 792
AspLEI GCGC 2 cut(s) 161, 238
AspS9I GGNCC 2 cut(s) 82, 1021
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 272, 688
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 2 cut(s) 82, 1021
BaeGI GKGCMC 1 cut(s) 845
BamHI GGATCC 1 cut(s) 1048
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 361
BbsI GAAGAC 2 cut(s) 30, 159
Bbv12I GWGCWC 3 cut(s) 345, 361, 845
BccI CCATC 2 cut(s) 927, 1197
BceAI ACGGC 5 cut(s) 53, 59, 133, 172, 296
BcgI CGANNNNNNTGC 4 cut(s) 127, 161, 942, 976
BciT130I CCWGG 4 cut(s) 999, 1017, 1025, 1201
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 1107
BfaI CTAG 1 cut(s) 753
BfmI CTRYAG 1 cut(s) 976
BfoI RGCGCY 1 cut(s) 162
Bme1390I CCNGG 5 cut(s) 392, 999, 1017, 1025, 1201
Bme18I GGWCC 2 cut(s) 82, 1021
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 82, 1021
BmiI GGNNCC 4 cut(s) 84, 160, 1022, 1050
BmrFI CCNGG 5 cut(s) 392, 999, 1017, 1025, 1201
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 3 cut(s) 460, 547, 722
BmuI ACTGGG 1 cut(s) 613
BpiI GAAGAC 2 cut(s) 30, 159
BpmI CTGGAG 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 753
BpuMI CCSGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 1168
BsaHI GRCGYC 3 cut(s) 96, 159, 180
BsaI GGTCTC 1 cut(s) 1107
BsaJI CCNNGG 4 cut(s) 565, 1016, 1024, 1199
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 348, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 763
Bse1I ACTGG 3 cut(s) 171, 608, 785
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 4 cut(s) 999, 1017, 1025, 1201
BseCI ATCGAT 1 cut(s) 1168
BseDI CCNNGG 4 cut(s) 565, 1016, 1024, 1199
BseGI GGATG 2 cut(s) 938, 1258
BseLI CCNNNNNNNGG 1 cut(s) 763
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 3 cut(s) 267, 425, 891
BseNI ACTGG 3 cut(s) 171, 608, 785
BseSI GKGCMC 1 cut(s) 845
BsgI GTGCAG 2 cut(s) 335, 1003
Bsh1236I CGCG 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 1168
BsiHKAI GWGCWC 3 cut(s) 345, 361, 845
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 391, 538
BslFI GGGAC 3 cut(s) 68, 1034, 1182
BslI CCNNNNNNNGG 1 cut(s) 763
BsmAI GTCTC 1 cut(s) 1107
BsmFI GGGAC 3 cut(s) 68, 1034, 1182
Bso31I GGTCTC 1 cut(s) 1107
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 3 cut(s) 345, 361, 845
Bsp143I GATC 4 cut(s) 229, 994, 1048, 1246
BspACI CCGC 5 cut(s) 66, 105, 136, 258, 915
BspCNI CTCAG 3 cut(s) 268, 424, 890
BspDI ATCGAT 1 cut(s) 1168
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 4 cut(s) 84, 160, 1022, 1050
BspPI GGATC 3 cut(s) 989, 1043, 1056
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 1107
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 3 cut(s) 171, 608, 785
BssECI CCNNGG 4 cut(s) 565, 1016, 1024, 1199
BssMI GATC 4 cut(s) 229, 994, 1048, 1246
BssNI GRCGYC 3 cut(s) 96, 159, 180
BssT1I CCWWGG 1 cut(s) 565
Bst2UI CCWGG 4 cut(s) 999, 1017, 1025, 1201
Bst4CI ACNGT 5 cut(s) 535, 640, 862, 1154, 1182
Bst6I CTCTTC 2 cut(s) 504, 872
BstACI GRCGYC 3 cut(s) 96, 159, 180
BstC8I GCNNGC 5 cut(s) 562, 572, 655, 758, 765
BstDEI CTNAG 3 cut(s) 276, 411, 877
BstF5I GGATG 2 cut(s) 938, 1258
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 161, 238
BstKTI GATC 4 cut(s) 232, 997, 1051, 1249
BstMAI GTCTC 1 cut(s) 1107
BstMBI GATC 4 cut(s) 229, 994, 1048, 1246
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 4 cut(s) 999, 1017, 1025, 1201
BstSCI CCNGG 5 cut(s) 390, 997, 1015, 1023, 1199
BstSFI CTRYAG 1 cut(s) 976
BstSLI GKGCMC 1 cut(s) 845
BstUI CGCG 1 cut(s) 236
BstV2I GAAGAC 2 cut(s) 30, 159
BstX2I RGATCY 2 cut(s) 994, 1048
BstYI RGATCY 2 cut(s) 994, 1048
Bsu15I ATCGAT 1 cut(s) 1168
BsuTUI ATCGAT 1 cut(s) 1168
BtsCI GGATG 2 cut(s) 938, 1258
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 6 cut(s) 273, 601, 636, 778, 960, 1150
Cac8I GCNNGC 5 cut(s) 562, 572, 655, 758, 765
CciI TCATGA 1 cut(s) 870
CfoI GCGC 2 cut(s) 161, 238
Cfr13I GGNCC 2 cut(s) 82, 1021
ClaI ATCGAT 1 cut(s) 1168
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 591, 1155
CviAII CATG 6 cut(s) 254, 401, 458, 650, 871, 1161
CviQI GTAC 2 cut(s) 591, 1155
DdeI CTNAG 3 cut(s) 276, 411, 877
DinI GGCGCC 1 cut(s) 160
DpnI GATC 4 cut(s) 231, 996, 1050, 1248
DpnII GATC 4 cut(s) 229, 994, 1048, 1246
DraI TTTAAA 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 504, 872
EarI CTCTTC 2 cut(s) 504, 872
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 1107
Eco32I GATATC 1 cut(s) 1206
Eco47I GGWCC 2 cut(s) 82, 1021
Eco53kI GAGCTC 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 359
EcoO109I RGGNCCY 2 cut(s) 82, 1021
EcoRII CCWGG 4 cut(s) 997, 1015, 1023, 1199
EcoRV GATATC 1 cut(s) 1206
EcoT14I CCWWGG 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 361
EgeI GGCGCC 1 cut(s) 160
EheI GGCGCC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 6 cut(s) 257, 404, 461, 653, 874, 1164
FaqI GGGAC 3 cut(s) 68, 1034, 1182
FatI CATG 6 cut(s) 253, 400, 457, 649, 870, 1160
FauI CCCGC 1 cut(s) 73
FblI GTMKAC 1 cut(s) 99
FokI GGATG 1 cut(s) 945
FriOI GRGCYC 1 cut(s) 361
FspBI CTAG 1 cut(s) 753
GlaI GCGC 2 cut(s) 160, 237
GsuI CTGGAG 1 cut(s) 154
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 2 cut(s) 391, 538
HgaI GACGC 1 cut(s) 188
HhaI GCGC 2 cut(s) 161, 238
Hin1I GRCGYC 3 cut(s) 96, 159, 180
Hin1II CATG 6 cut(s) 257, 404, 461, 653, 874, 1164
Hin6I GCGC 2 cut(s) 159, 236
HinP1I GCGC 2 cut(s) 159, 236
HinfI GANTC 2 cut(s) 44, 493
HpaII CCGG 2 cut(s) 391, 538
HphI GGTGA 2 cut(s) 272, 688
Hpy166II GTNNAC 2 cut(s) 100, 843
Hpy188I TCNGA 6 cut(s) 13, 43, 708, 718, 900, 1133
Hpy188III TCNNGA 5 cut(s) 127, 176, 433, 871, 1250
Hpy8I GTNNAC 2 cut(s) 100, 843
Hpy99I CGWCG 5 cut(s) 37, 74, 80, 98, 149
HpyAV CCTTC 2 cut(s) 578, 1216
HpyCH4III ACNGT 5 cut(s) 535, 640, 862, 1154, 1182
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 3 cut(s) 276, 411, 877
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 3 cut(s) 96, 159, 180
Hsp92II CATG 6 cut(s) 257, 404, 461, 653, 874, 1164
HspAI GCGC 2 cut(s) 159, 236
KasI GGCGCC 1 cut(s) 158
Kzo9I GATC 4 cut(s) 229, 994, 1048, 1246
LmnI GCTCC 4 cut(s) 356, 832, 895, 1148
LweI GCATC 3 cut(s) 460, 547, 722
MaeI CTAG 1 cut(s) 753
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 907
MalI GATC 4 cut(s) 231, 996, 1050, 1248
MboI GATC 4 cut(s) 229, 994, 1048, 1246
MboII GAAGA 6 cut(s) 30, 164, 491, 817, 859, 1004
MflI RGATCY 2 cut(s) 994, 1048
MhlI GDGCHC 3 cut(s) 345, 361, 845
MluCI AATT 5 cut(s) 622, 792, 1075, 1096, 1210
Mly113I GGCGCC 1 cut(s) 159
MlyI GAGTC 2 cut(s) 38, 502
MseI TTAA 3 cut(s) 614, 671, 785
MslI CAYNNNNRTG 3 cut(s) 258, 732, 1084
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 2 cut(s) 391, 538
MspR9I CCNGG 5 cut(s) 392, 999, 1017, 1025, 1201
MvaI CCWGG 4 cut(s) 999, 1017, 1025, 1201
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 329
NarI GGCGCC 1 cut(s) 159
NciI CCSGG 1 cut(s) 392
NdeII GATC 4 cut(s) 229, 994, 1048, 1246
NlaIII CATG 6 cut(s) 257, 404, 461, 653, 874, 1164
NlaIV GGNNCC 4 cut(s) 84, 160, 1022, 1050
PagI TCATGA 1 cut(s) 870
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PleI GAGTC 2 cut(s) 38, 501
PluTI GGCGCC 1 cut(s) 162
PpsI GAGTC 2 cut(s) 38, 501
PpuMI RGGWCCY 2 cut(s) 82, 1021
Psp124BI GAGCTC 1 cut(s) 361
Psp5II RGGWCCY 2 cut(s) 82, 1021
Psp6I CCWGG 4 cut(s) 997, 1015, 1023, 1199
PspGI CCWGG 4 cut(s) 997, 1015, 1023, 1199
PspN4I GGNNCC 4 cut(s) 84, 160, 1022, 1050
PspPI GGNCC 2 cut(s) 82, 1021
PspPPI RGGWCCY 2 cut(s) 82, 1021
PsuI RGATCY 2 cut(s) 994, 1048
RsaI GTAC 2 cut(s) 592, 1156
RsaNI GTAC 2 cut(s) 591, 1155
RseI CAYNNNNRTG 3 cut(s) 258, 732, 1084
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 3 cut(s) 614, 671, 785
Sau3AI GATC 4 cut(s) 229, 994, 1048, 1246
Sau96I GGNCC 2 cut(s) 82, 1021
SchI GAGTC 2 cut(s) 38, 502
ScrFI CCNGG 5 cut(s) 392, 999, 1017, 1025, 1201
SduI GDGCHC 3 cut(s) 345, 361, 845
SfaNI GCATC 3 cut(s) 460, 547, 722
SfcI CTRYAG 1 cut(s) 976
SfoI GGCGCC 1 cut(s) 160
SinI GGWCC 2 cut(s) 82, 1021
SmiMI CAYNNNNRTG 3 cut(s) 258, 732, 1084
SmlI CTYRAG 1 cut(s) 768
SmoI CTYRAG 1 cut(s) 768
Sse9I AATT 5 cut(s) 622, 792, 1075, 1096, 1210
SsiI CCGC 5 cut(s) 66, 105, 136, 258, 915
SspDI GGCGCC 1 cut(s) 158
SspI AATATT 1 cut(s) 1063
SspMI CTAG 1 cut(s) 753
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 5 cut(s) 390, 997, 1015, 1023, 1199
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 5 cut(s) 535, 640, 862, 1154, 1182
TaiI ACGT 1 cut(s) 99
TaqI TCGA 5 cut(s) 78, 93, 147, 1168, 1236
TasI AATT 5 cut(s) 622, 792, 1075, 1096, 1210
TauI GCSGC 1 cut(s) 917
Tru1I TTAA 3 cut(s) 614, 671, 785
Tru9I TTAA 3 cut(s) 614, 671, 785
TscAI CASTG 6 cut(s) 280, 608, 643, 785, 960, 1157
TspDTI ATGAA 8 cut(s) 389, 491, 638, 859, 887, 936, 1068, 1085
TspRI CASTG 6 cut(s) 280, 608, 643, 785, 960, 1157
VneI GTGCAC 1 cut(s) 841
VpaK11BI GGWCC 2 cut(s) 82, 1021
XapI RAATTY 2 cut(s) 622, 792
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 753
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.