Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

61055602 .. 61065775

Gene Structure 10174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG383800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCATTAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAACGTGGAGGCTTGCACTGTGCTTGTTTATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGTATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTTTCCAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTATTGGTTTCTGGGGATGGGCAGCTACTTCATTTGCAGTGGGTTCGCTCATTATGTTCTACAGGTGCAGCAGTCAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTAAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGTCCCACATGTAATCGATGTGTAGAACAGTTTGACCATAATTGCCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCAAGATTTCTTTATTTTCATCTGCATGGGAACATTGACATCAAGCATTTCTGCTGCTGTTACAGTTCAAAGGATTTGGACTGCTGTGCCAACATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAATTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTATGACACAGTGGCACAAGCATCTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

264

Amino Acids

29.69

Weight (kDa)

8.8

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	4 - 60	9.5e-06	Ankyrin repeats (3 copies)
DHHC	PF01529	150 - 258	2.8e-28	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	3 cut(s)	332, 386, 399
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	3 cut(s)	415, 644, 710
AjnI	CCWGG	2 cut(s)	340, 542
AluBI	AGCT	2 cut(s)	233, 284
AluI	AGCT	2 cut(s)	233, 284
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	3 cut(s)	332, 386, 399
ApeKI	GCWGC	7 cut(s)	32, 184, 230, 257, 281, 327, 629
ApoI	RAATTY	1 cut(s)	216
AseI	ATTAAT	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	193
BbvI	GCAGC	7 cut(s)	19, 196, 242, 244, 293, 339, 616
BccI	CCATC	2 cut(s)	270, 427
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	2 cut(s)	342, 544
BcoDI	GTCTC	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	670
BisI	GCNGC	7 cut(s)	33, 185, 231, 258, 282, 328, 630
BlsI	GCNGC	7 cut(s)	34, 186, 232, 259, 283, 329, 631
Bme1390I	CCNGG	2 cut(s)	342, 544
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	342, 544
BmrI	ACTGGG	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	32, 209
BseBI	CCWGG	2 cut(s)	342, 544
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	2 cut(s)	281, 438
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	2 cut(s)	32, 209
BseXI	GCAGC	7 cut(s)	19, 196, 242, 244, 293, 339, 616
BsgI	GTGCAG	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	377, 483
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	377, 483
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	337, 391
BspACI	CCGC	1 cut(s)	187
BspDI	ATCGAT	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	3 cut(s)	332, 386, 399
BspTNI	GGTCTC	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	32, 209
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	2 cut(s)	337, 391
Bst2UI	CCWGG	2 cut(s)	342, 544
Bst4CI	ACNGT	5 cut(s)	64, 497, 525, 640, 774
BstC8I	GCNNGC	4 cut(s)	58, 79, 182, 189
BstDEI	CTNAG	1 cut(s)	788
BstF5I	GGATG	2 cut(s)	281, 438
BstKTI	GATC	2 cut(s)	340, 394
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	2 cut(s)	337, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	670
BstNI	CCWGG	2 cut(s)	342, 544
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	340, 542
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	7 cut(s)	19, 196, 242, 244, 293, 339, 616
BstX2I	RGATCY	2 cut(s)	337, 391
BstYI	RGATCY	2 cut(s)	337, 391
Bsu15I	ATCGAT	1 cut(s)	511
BsuTUI	ATCGAT	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	281, 438
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	6 cut(s)	25, 60, 202, 303, 493, 779
Cac8I	GCNNGC	4 cut(s)	58, 79, 182, 189
ClaI	ATCGAT	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	4 cut(s)	504, 601, 669, 698
CviJI	RGCY	7 cut(s)	32, 56, 180, 191, 233, 284, 345
CviKI_1	RGCY	7 cut(s)	32, 56, 180, 191, 233, 284, 345
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	788
DpnI	GATC	2 cut(s)	339, 393
DpnII	GATC	2 cut(s)	337, 391
DraI	TTTAAA	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	340, 542
EcoRV	GATATC	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	4 cut(s)	507, 604, 672, 701
FaqI	GGGAC	2 cut(s)	377, 483
FatI	CATG	4 cut(s)	503, 600, 668, 697
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	7 cut(s)	33, 185, 231, 258, 282, 328, 630
FokI	GGATG	2 cut(s)	288, 445
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	7 cut(s)	33, 185, 231, 258, 282, 328, 630
GluI	GCNGC	7 cut(s)	33, 185, 231, 258, 282, 328, 630
Hin1II	CATG	4 cut(s)	507, 604, 672, 701
HinfI	GANTC	1 cut(s)	691
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	4 cut(s)	132, 142, 243, 476
Hpy188III	TCNNGA	1 cut(s)	335
HpyCH4III	ACNGT	5 cut(s)	64, 497, 525, 640, 774
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	8 cut(s)	25, 60, 77, 296, 327, 465, 600, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	670
HpyF3I	CTNAG	1 cut(s)	788
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	507, 604, 672, 701
Kzo9I	GATC	2 cut(s)	337, 391
LmnI	GCTCC	2 cut(s)	238, 491
Lsp1109I	GCAGC	7 cut(s)	19, 196, 242, 244, 293, 339, 616
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	250, 634
MalI	GATC	2 cut(s)	339, 393
MboI	GATC	2 cut(s)	337, 391
MboII	GAAGA	1 cut(s)	692
MflI	RGATCY	2 cut(s)	337, 391
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	7 cut(s)	92, 216, 418, 439, 535, 553, 717
MnlI	CCTC	3 cut(s)	46, 382, 405
MseI	TTAA	4 cut(s)	38, 95, 209, 401
MslI	CAYNNNNRTG	4 cut(s)	156, 427, 599, 733
MspA1I	CMGCKG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	342, 544
MvaI	CCWGG	2 cut(s)	342, 544
MwoI	GCNNNNNNNGC	1 cut(s)	670
NdeII	GATC	2 cut(s)	337, 391
NlaIII	CATG	4 cut(s)	507, 604, 672, 701
NlaIV	GGNNCC	1 cut(s)	393
NspI	RCATGY	1 cut(s)	507
PciI	ACATGT	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	691
PkrI	GCNGC	7 cut(s)	34, 186, 232, 259, 283, 329, 631
PscI	ACATGT	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	340, 542
PspGI	CCWGG	2 cut(s)	340, 542
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	337, 391
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	4 cut(s)	156, 427, 599, 733
SaqAI	TTAA	4 cut(s)	38, 95, 209, 401
SatI	GCNGC	7 cut(s)	33, 185, 231, 258, 282, 328, 630
Sau3AI	GATC	2 cut(s)	337, 391
ScrFI	CCNGG	2 cut(s)	342, 544
SduI	GDGCHC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	4 cut(s)	156, 427, 599, 733
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	7 cut(s)	92, 216, 418, 439, 535, 553, 717
SsiI	CCGC	1 cut(s)	187
SspI	AATATT	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	340, 542
TaaI	ACNGT	5 cut(s)	64, 497, 525, 640, 774
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	511
TasI	AATT	7 cut(s)	92, 216, 418, 439, 535, 553, 717
TfiI	GAWTC	1 cut(s)	691
Tru1I	TTAA	4 cut(s)	38, 95, 209, 401
Tru9I	TTAA	4 cut(s)	38, 95, 209, 401
TscAI	CASTG	6 cut(s)	32, 67, 209, 303, 500, 779
TseI	GCWGC	7 cut(s)	32, 184, 230, 257, 281, 327, 629
TspDTI	ATGAA	4 cut(s)	279, 411, 583, 683
TspRI	CASTG	6 cut(s)	32, 67, 209, 303, 500, 779
VspI	ATTAAT	1 cut(s)	95
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.