Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

7918976 .. 7926226

Gene Structure 7251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1058600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGCTTCTTCAGAGATAGAGGTGGTGTCGTCGGAACCAAAAACCCAGAAAAACCCTGCGGAAATGCCCGTGCTTGACGTCTTCTCTGCTTCTGCTTATGGCGATTTTCAGAAACTCAGAAAGTTCGTCGAGCAAGATGGTGCCTCTCTCTCCAAGCCAGACGTCCATGGCTACTACGCCCTCCATTGGGCTGCTCTCAATAACTTCCCCGATATCGCTCACTACATAATTCAGTGGCATGGCGGCGATGTCAGTGCGACTGACAATGTACAGCAGACAGCATTGCATTGGGCAGCTGTGCAGGGTGCAATTTTGGCGGCGGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCAGCTGATGTACATGACTACCGGGCCGGTCCAAACCCCCATATCACCCAGTTCTTGCAAAAGGAATTAAAGAAGCTCAATTGGGGGGGGGGGGGAGATTATAGAGAATTTAGGAAGGAAGAAAATGCCATGGGAAGGATGCTCATCCTGTCATACCTATTTTGGTTCCCTGTGTATCATTCTTACACTTTTGACTTGGGACCCATTTCTTTAAAAGTAGTTCCCCATAGTCTTGCCCTGCTCTTGTATATCTGTATTGTGGGACATGCAGTTCACGTTGCTGCTCAATATGGGCAAACATCTTTTTTGAATCACATTGTTGCAATATATCACGCTGATTTTGATGCCCCTGATAATGAGGGGAGGAGTCCTCTTCATTGGGCCGCCTATAAAGGTTTTGCAGATACAGTTAGATTGCTTCTGTTTAGAGATGCATGCCAAGGGAGACAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAGGGGGAACATGGAGGCTTGCACTGTGCTTGTCTATGCTGGCTCTAAGAAGGAATTAATGGTGAAAGACAATACTGGTTTTACTCCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTCTTCCTTGCTAACCAGCAGCGGGCTCATAGAAAATGCTGGAGAGACAAATTTTGCATTGGGAAGATGGCGGATATTGGTTACGCACCTGTCTTGTTGTGTATAATAGTCTTTCAGACAGTTCTCTTTATGAACTCAGTCCTCGCAGCACCTAATCTGACAAAGGTTACTGCTGCTGTCGGTCTTTGGGGATGGGCTGCCATTTCATTAGCAGTGGGTTCCTTGATTATGTTCTACAGGTGCAGCAGTAAGGATCCAGGTTACATCAAAAGAGCAGGGGATTTCAGCAATCCTATAAATACAGAGATAATTAGACCTGTTCGCTCTAAACACTGCCCCACATGTAACCGATGTGTAGAACAGTTTGACCATCATTGTCCATGGATATCTAATTGTGTTGGAAAGAGAAACAAACGGGATTTCTTTATATTTATCTGCTTAGGAACTTTGACGTCACTCCTTTCTACTGCCGTTGCAGTTCAAAGGATTTGGAGTGCATTGCCGGGATTGCAAACAGAAGAAACATGGATTCGTCGTGTGGTAGTTCAATATCCTAGTATTGTTGCTTTTCTGTTTGTGGACATAATCATTTTGATAGCTGCTACAACCCTAACGAAGGCACAGGCAACTCAGATAGCTCGAAATATCACCACCAATGAATTGGCAAATGCTAATCGTTATGGGTATCTTCGCGGTCCAGATGGGCGGTTCCAAAACCCGTATAACCATGGGTGCAGAAAAATTGTTCTGATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

576

Amino Acids

64.23

Weight (kDa)

8.83

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	30 - 120	5.4e-10	Ankyrin repeats (3 copies)
Ank_2	PF12796	210 - 298	3.4e-16	Ankyrin repeats (3 copies)
Ank_2	PF12796	267 - 328	8.4e-09	Ankyrin repeats (3 copies)
DHHC	PF01529	424 - 546	8.4e-31	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	81, 165, 1424
AccB1I	GGYRCC	1 cut(s)	140
AccII	CGCG	1 cut(s)	1662
AciI	CCGC	9 cut(s)	59, 243, 317, 320, 738, 991, 1040, 1662, 1675
AclWI	GGATC	2 cut(s)	1217, 1230
AcsI	RAATTY	2 cut(s)	461, 1019
AcyI	GRCGYC	3 cut(s)	78, 162, 1421
AfaI	GTAC	3 cut(s)	270, 366, 820
AfiI	CCNNNNNNNGG	5 cut(s)	186, 187, 489, 991, 1585
AflIII	ACRYGT	1 cut(s)	1310
AgsI	TTSAA	3 cut(s)	664, 1451, 1517
AjnI	CCWGG	1 cut(s)	1225
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	6 cut(s)	296, 344, 359, 430, 1568, 1607
AluI	AGCT	6 cut(s)	296, 344, 359, 430, 1568, 1607
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	793, 1008
AlwI	GGATC	2 cut(s)	1217, 1230
AoxI	GGCC	2 cut(s)	378, 735
ApoI	RAATTY	2 cut(s)	461, 1019
AseI	ATTAAT	1 cut(s)	899
AspS9I	GGNCC	5 cut(s)	378, 383, 554, 735, 1664
AsuC2I	CCSGG	2 cut(s)	377, 1473
AsuHPI	GGTGA	3 cut(s)	391, 916, 1609
AvaII	GGWCC	3 cut(s)	383, 554, 1664
BamHI	GGATCC	1 cut(s)	1222
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	997
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	5 cut(s)	131, 1030, 1155, 1347, 1664
BceAI	ACGGC	1 cut(s)	1424
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	1227
BcnI	CCSGG	2 cut(s)	377, 1473
BcoDI	GTCTC	2 cut(s)	793, 1008
BfaI	CTAG	2 cut(s)	345, 1524
BfmI	CTRYAG	1 cut(s)	1204
Bme1390I	CCNGG	3 cut(s)	377, 1227, 1473
Bme18I	GGWCC	3 cut(s)	383, 554, 1664
BmgT120I	GGNCC	5 cut(s)	378, 383, 554, 735, 1664
BmiI	GGNNCC	8 cut(s)	36, 142, 521, 555, 556, 1189, 1224, 1679
BmrFI	CCNGG	3 cut(s)	377, 1227, 1473
BmrI	ACTGGG	2 cut(s)	397, 841
BmsI	GCATC	4 cut(s)	483, 688, 775, 950
BmuI	ACTGGG	2 cut(s)	397, 841
BpiI	GAAGAC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpmI	CTGGAG	1 cut(s)	1030
Bpu10I	CCTNAGC	1 cut(s)	1408
BpuMI	CCSGG	2 cut(s)	377, 1473
BsaBI	GATNNNNATC	1 cut(s)	497
BsaHI	GRCGYC	3 cut(s)	78, 162, 1421
BsaJI	CCNNGG	5 cut(s)	166, 483, 793, 1349, 1696
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	5 cut(s)	186, 187, 489, 991, 1585
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	403, 836, 922
Bse3DI	GCAATG	2 cut(s)	281, 1466
Bse8I	GATNNNNATC	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	1227
BseDI	CCNNGG	5 cut(s)	166, 483, 793, 1349, 1696
BseGI	GGATG	4 cut(s)	328, 498, 498, 1166
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	5 cut(s)	186, 187, 489, 991, 1585
BseMI	GCAATG	2 cut(s)	281, 1466
BseMII	CTCAG	3 cut(s)	130, 1119, 1613
BseNI	ACTGG	3 cut(s)	403, 836, 922
BseRI	GAGGAG	1 cut(s)	733
BsgI	GTGCAG	3 cut(s)	320, 1231, 1723
Bsh1236I	CGCG	1 cut(s)	1662
BshFI	GGCC	2 cut(s)	380, 737
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	376, 381, 1472
BslFI	GGGAC	2 cut(s)	567, 630
BslI	CCNNNNNNNGG	5 cut(s)	186, 187, 489, 991, 1585
BsmAI	GTCTC	2 cut(s)	793, 1008
BsmFI	GGGAC	2 cut(s)	567, 630
BsnI	GGCC	2 cut(s)	380, 737
Bsp1286I	GDGCHC	2 cut(s)	330, 997
Bsp1407I	TGTACA	2 cut(s)	268, 364
Bsp143I	GATC	1 cut(s)	1222
Bsp19I	CCATGG	4 cut(s)	166, 483, 1349, 1696
BspACI	CCGC	9 cut(s)	59, 243, 317, 320, 738, 991, 1040, 1662, 1675
BspANI	GGCC	2 cut(s)	380, 737
BspCNI	CTCAG	3 cut(s)	129, 1118, 1612
BspFNI	CGCG	1 cut(s)	1662
BspLI	GGNNCC	8 cut(s)	36, 142, 521, 555, 556, 1189, 1224, 1679
BspPI	GGATC	2 cut(s)	1217, 1230
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	281, 1466
BsrFI	RCCGGY	1 cut(s)	380
BsrGI	TGTACA	2 cut(s)	268, 364
BsrI	ACTGG	3 cut(s)	403, 836, 922
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	5 cut(s)	166, 483, 793, 1349, 1696
BssMI	GATC	1 cut(s)	1222
BssNI	GRCGYC	3 cut(s)	78, 162, 1421
BssT1I	CCWWGG	5 cut(s)	166, 483, 793, 1349, 1696
Bst2UI	CCWGG	1 cut(s)	1227
Bst4CI	ACNGT	4 cut(s)	763, 868, 1090, 1332
Bst6I	CTCTTC	2 cut(s)	732, 977
BstACI	GRCGYC	3 cut(s)	78, 162, 1421
BstAUI	TGTACA	2 cut(s)	268, 364
BstC8I	GCNNGC	4 cut(s)	790, 862, 883, 993
BstDEI	CTNAG	5 cut(s)	116, 888, 1105, 1408, 1599
BstDSI	CCRYGG	4 cut(s)	166, 483, 1349, 1696
BstENI	CCTNNNNNAGG	1 cut(s)	1583
BstF5I	GGATG	4 cut(s)	328, 498, 498, 1166
BstFNI	CGCG	1 cut(s)	1662
BstKTI	GATC	1 cut(s)	1225
BstMAI	GTCTC	2 cut(s)	793, 1008
BstMBI	GATC	1 cut(s)	1222
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 1477
BstNI	CCWGG	1 cut(s)	1227
BstNSI	RCATGY	3 cut(s)	623, 792, 1314
BstSCI	CCNGG	3 cut(s)	375, 1225, 1471
BstSFI	CTRYAG	1 cut(s)	1204
BstUI	CGCG	1 cut(s)	1662
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	1222
BstXI	CCANNNNNNTGG	1 cut(s)	1630
BstYI	RGATCY	1 cut(s)	1222
BsuRI	GGCC	2 cut(s)	380, 737
BtgI	CCRYGG	4 cut(s)	166, 483, 1349, 1696
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	328, 498, 498, 1166
BtsI	GCAGTG	2 cut(s)	1188, 1300
BtsIMutI	CAGTG	6 cut(s)	239, 259, 829, 864, 1188, 1300
Cac8I	GCNNGC	4 cut(s)	790, 862, 883, 993
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	5 cut(s)	378, 383, 554, 735, 1664
Csp6I	GTAC	3 cut(s)	269, 365, 819
CviQI	GTAC	3 cut(s)	269, 365, 819
DdeI	CTNAG	5 cut(s)	116, 888, 1105, 1408, 1599
DpnI	GATC	1 cut(s)	1224
DpnII	GATC	1 cut(s)	1222
DraI	TTTAAA	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	732, 977
EarI	CTCTTC	2 cut(s)	732, 977
EciI	GGCGGA	2 cut(s)	335, 1055
Eco130I	CCWWGG	5 cut(s)	166, 483, 793, 1349, 1696
Eco24I	GRGCYC	1 cut(s)	997
Eco32I	GATATC	2 cut(s)	214, 1356
Eco47I	GGWCC	3 cut(s)	383, 554, 1664
EcoNI	CCTNNNNNAGG	1 cut(s)	1583
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	1225
EcoRV	GATATC	2 cut(s)	214, 1356
EcoT14I	CCWWGG	5 cut(s)	166, 483, 793, 1349, 1696
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	997
ErhI	CCWWGG	5 cut(s)	166, 483, 793, 1349, 1696
FaqI	GGGAC	2 cut(s)	567, 630
FauI	CCCGC	1 cut(s)	984
FokI	GGATG	4 cut(s)	335, 485, 505, 1173
FriOI	GRGCYC	1 cut(s)	997
FspBI	CTAG	2 cut(s)	345, 1524
GsuI	CTGGAG	1 cut(s)	1030
HaeIII	GGCC	2 cut(s)	380, 737
HapII	CCGG	3 cut(s)	376, 381, 1472
Hin1I	GRCGYC	3 cut(s)	78, 162, 1421
HinfI	GANTC	3 cut(s)	664, 721, 1498
HpaII	CCGG	3 cut(s)	376, 381, 1472
HphI	GGTGA	3 cut(s)	391, 916, 1609
Hpy166II	GTNNAC	2 cut(s)	628, 1549
Hpy188III	TCNNGA	1 cut(s)	1667
Hpy8I	GTNNAC	2 cut(s)	628, 1549
Hpy99I	CGWCG	3 cut(s)	34, 131, 1506
HpyAV	CCTTC	5 cut(s)	463, 483, 806, 886, 1579
HpyCH4III	ACNGT	4 cut(s)	763, 868, 1090, 1332
HpyCH4IV	ACGT	4 cut(s)	78, 162, 630, 1421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 1477
HpyF3I	CTNAG	5 cut(s)	116, 888, 1105, 1408, 1599
HpySE526I	ACGT	4 cut(s)	78, 162, 630, 1421
Hsp92I	GRCGYC	3 cut(s)	78, 162, 1421
KflI	GGGWCCC	1 cut(s)	554
Kzo9I	GATC	1 cut(s)	1222
LmnI	GCTCC	1 cut(s)	341
LweI	GCATC	4 cut(s)	483, 688, 775, 950
MaeI	CTAG	2 cut(s)	345, 1524
MaeII	ACGT	4 cut(s)	78, 162, 630, 1421
MaeIII	GTNAC	5 cut(s)	1049, 1135, 1229, 1313, 1422
MalI	GATC	1 cut(s)	1224
MboI	GATC	1 cut(s)	1222
MboII	GAAGA	7 cut(s)	73, 485, 719, 964, 1045, 1499, 1649
MfeI	CAATTG	1 cut(s)	433
MflI	RGATCY	1 cut(s)	1222
MhlI	GDGCHC	2 cut(s)	330, 997
MlyI	GAGTC	1 cut(s)	730
MmeI	TCCRAC	2 cut(s)	12, 1348
MnlI	CCTC	9 cut(s)	13, 154, 191, 346, 706, 711, 735, 850, 1121
Mph1103I	ATGCAT	1 cut(s)	790
MseI	TTAA	4 cut(s)	422, 566, 842, 899
MslI	CAYNNNNRTG	1 cut(s)	960
MspA1I	CMGCKG	3 cut(s)	296, 359, 991
MspI	CCGG	3 cut(s)	376, 381, 1472
MspR9I	CCNGG	3 cut(s)	377, 1227, 1473
MunI	CAATTG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	1227
MvnI	CGCG	1 cut(s)	1662
MwoI	GCNNNNNNNGC	2 cut(s)	314, 1477
NciI	CCSGG	2 cut(s)	377, 1473
NcoI	CCATGG	4 cut(s)	166, 483, 1349, 1696
NdeII	GATC	1 cut(s)	1222
NlaIV	GGNNCC	8 cut(s)	36, 142, 521, 555, 556, 1189, 1224, 1679
NmuCI	GTSAC	1 cut(s)	1422
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	3 cut(s)	623, 792, 1314
PaeI	GCATGC	1 cut(s)	792
PciI	ACATGT	1 cut(s)	1310
PfeI	GAWTC	2 cut(s)	664, 1498
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
PpuMI	RGGWCCY	1 cut(s)	554
PscI	ACATGT	1 cut(s)	1310
PshBI	ATTAAT	1 cut(s)	899
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	1225
PspGI	CCWGG	1 cut(s)	1225
PspN4I	GGNNCC	8 cut(s)	36, 142, 521, 555, 556, 1189, 1224, 1679
PspPI	GGNCC	5 cut(s)	378, 383, 554, 735, 1664
PspPPI	RGGWCCY	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	1222
PvuII	CAGCTG	2 cut(s)	296, 359
RsaI	GTAC	3 cut(s)	270, 366, 820
RsaNI	GTAC	3 cut(s)	269, 365, 819
RseI	CAYNNNNRTG	1 cut(s)	960
SaqAI	TTAA	4 cut(s)	422, 566, 842, 899
Sau3AI	GATC	1 cut(s)	1222
Sau96I	GGNCC	5 cut(s)	378, 383, 554, 735, 1664
SchI	GAGTC	1 cut(s)	730
ScrFI	CCNGG	3 cut(s)	377, 1227, 1473
SduI	GDGCHC	2 cut(s)	330, 997
SfaNI	GCATC	4 cut(s)	483, 688, 775, 950
SfcI	CTRYAG	1 cut(s)	1204
SinI	GGWCC	3 cut(s)	383, 554, 1664
SmiMI	CAYNNNNRTG	1 cut(s)	960
SphI	GCATGC	1 cut(s)	792
SsiI	CCGC	9 cut(s)	59, 243, 317, 320, 738, 991, 1040, 1662, 1675
SspMI	CTAG	2 cut(s)	345, 1524
StyD4I	CCNGG	3 cut(s)	375, 1225, 1471
StyI	CCWWGG	5 cut(s)	166, 483, 793, 1349, 1696
TaaI	ACNGT	4 cut(s)	763, 868, 1090, 1332
TaiI	ACGT	4 cut(s)	81, 165, 633, 1424
TaqI	TCGA	2 cut(s)	129, 1609
TaqII	GACCGA	1 cut(s)	1139
TatI	WGTACW	2 cut(s)	268, 364
TauI	GCSGC	3 cut(s)	246, 320, 740
TfiI	GAWTC	2 cut(s)	664, 1498
Tru1I	TTAA	4 cut(s)	422, 566, 842, 899
Tru9I	TTAA	4 cut(s)	422, 566, 842, 899
TscAI	CASTG	6 cut(s)	239, 259, 836, 871, 1188, 1307
TseFI	GTSAC	1 cut(s)	1422
Tsp45I	GTSAC	1 cut(s)	1422
TspDTI	ATGAA	4 cut(s)	719, 1115, 1164, 1641
TspRI	CASTG	6 cut(s)	239, 259, 836, 871, 1188, 1307
VpaK11BI	GGWCC	3 cut(s)	383, 554, 1664
VspI	ATTAAT	1 cut(s)	899
XagI	CCTNNNNNAGG	1 cut(s)	1583
XapI	RAATTY	2 cut(s)	461, 1019
XceI	RCATGY	3 cut(s)	623, 792, 1314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1627
XspI	CTAG	2 cut(s)	345, 1524
ZraI	GACGTC	3 cut(s)	79, 163, 1422
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.