Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8178534.1

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 613

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8178534.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggtctcttcagagatagagatagtctcgtcgtcgtcggactcaaaaccccttgaccaaaaccctaccgccgtcgccgtcgaggtccctataatcgacgtcttctctgcttctgcttacggcgatttccccaaactcaggaagttcgtcgaggaagacggtgcctctctctcccagcctgatggccatggctactacgcactccattgggctgctctcaataacttccctgatatcgcccactacataattcagcatggcggggacgtgaatgccaccgagaatatagggcagacagcattgcattgggcagccgtgcagggtgcaatcgcagcggctgatgtgctcttgcagaatggagctagggttgaggctgctgatgtaaatgggtaccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

132

Amino Acids

14.04

Weight (kDa)

4.48

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	2 cut(s)	161, 390
AciI	CCGC	3 cut(s)	69, 261, 335
AcoI	YGGCCR	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	138
AjiI	CACGTC	1 cut(s)	268
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	10, 31
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	4 cut(s)	212, 311, 332, 374
Asp718I	GGTACC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	186
BanI	GGYRCC	2 cut(s)	161, 390
BbsI	GAAGAC	2 cut(s)	94, 162
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	199, 323, 344, 361
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	4 cut(s)	56, 62, 136, 299
BcoDI	GTCTC	2 cut(s)	10, 31
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	5 cut(s)	213, 312, 333, 336, 375
BlsI	GCNGC	5 cut(s)	214, 313, 334, 337, 376
Bme18I	GGWCC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	87, 163, 392
BpiI	GAAGAC	2 cut(s)	94, 162
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	151
BseXI	GCAGC	4 cut(s)	199, 323, 344, 361
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	2 cut(s)	161, 390
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	71, 278
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	2 cut(s)	10, 31
BsmFI	GGGAC	2 cut(s)	71, 278
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	3 cut(s)	69, 261, 335
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	87, 163, 392
BspT107I	GGYRCC	2 cut(s)	161, 390
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	10, 31
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstV1I	GCAGC	4 cut(s)	199, 323, 344, 361
BstV2I	GAAGAC	2 cut(s)	94, 162
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	2 cut(s)	188, 257
CviJI	RGCY	8 cut(s)	178, 186, 192, 212, 314, 338, 362, 374
CviKI_1	RGCY	8 cut(s)	178, 186, 192, 212, 314, 338, 362, 374
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	191, 260
FaiI	YATR	5 cut(s)	92, 189, 248, 258, 287
FaqI	GGGAC	2 cut(s)	71, 278
FatI	CATG	2 cut(s)	187, 256
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	5 cut(s)	213, 312, 333, 336, 375
Fsp4HI	GCNGC	5 cut(s)	213, 312, 333, 336, 375
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	5 cut(s)	213, 312, 333, 336, 375
GsaI	CCCAGC	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	191, 260
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	13, 40
Hpy188III	TCNNGA	1 cut(s)	139
Hpy99I	CGWCG	7 cut(s)	34, 37, 40, 77, 83, 101, 152
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	2 cut(s)	99, 267
HpyCH4V	TGCA	4 cut(s)	304, 319, 326, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	2 cut(s)	99, 267
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	191, 260
KpnI	GGTACC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	5 cut(s)	124, 188, 192, 243, 305
Lsp1109I	GCAGC	4 cut(s)	199, 323, 344, 361
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	99, 267
MboII	GAAGA	2 cut(s)	94, 167
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	76, 145, 175, 364
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	187
NlaIII	CATG	2 cut(s)	191, 260
NlaIV	GGNNCC	3 cut(s)	87, 163, 392
PctI	GAATGC	1 cut(s)	277
PkrI	GCNGC	5 cut(s)	214, 313, 334, 337, 376
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	87, 163, 392
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SatI	GCNGC	5 cut(s)	213, 312, 333, 336, 375
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	4 cut(s)	87, 102, 270, 364
SinI	GGWCC	1 cut(s)	85
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	69, 261, 335
SspMI	CTAG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	2 cut(s)	102, 270
TaqI	TCGA	3 cut(s)	81, 96, 150
TasI	AATT	1 cut(s)	249
TauI	GCSGC	1 cut(s)	338
TseI	GCWGC	4 cut(s)	212, 311, 332, 374
VpaK11BI	GGWCC	1 cut(s)	85
XspI	CTAG	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.