Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

63203714 .. 63211025

Gene Structure 7312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG371900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAAAATAACTTTACCCCTACTATTCCCCGTGGCCCATACCGTCCTGTTAAGACTTCCCGTATGGCAGTTCACGTTACTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTGCAGAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGTAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCGGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGGTTTACAAGGAAACGTGGAGGCTTGCACTGTGCTTGTTTATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTTTCCAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTTTTCTGCACAATAATCATTCAAGCAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTATTGGTTTCTGGGGATGGGCAGCTACTTCATTTGCAGTGGGTTCACTCATTATGTTCTACAGGTGCAGTAGTCAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTAAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTTGCTCCAAACACTGTCCCACTTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

280

Amino Acids

30.92

Weight (kDa)

8.67

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	25 - 112	7.8e-15	Ankyrin repeats (3 copies)
Ank_2	PF12796	82 - 143	2.4e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	200, 436
AclWI	GGATC	3 cut(s)	662, 716, 729
AcsI	RAATTY	1 cut(s)	465
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	109, 530, 745
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	2 cut(s)	563, 614
AluI	AGCT	2 cut(s)	563, 614
Alw26I	GTCTC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	662, 716, 729
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	5 cut(s)	182, 433, 560, 587, 611
ApoI	RAATTY	1 cut(s)	465
AseI	ATTAAT	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	169, 445, 572, 574, 623
BccI	CCATC	2 cut(s)	600, 757
BciT130I	CCWGG	1 cut(s)	672
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	649
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	5 cut(s)	183, 434, 561, 588, 612
BlsI	GCNGC	5 cut(s)	184, 435, 562, 589, 613
Bme1390I	CCNGG	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	1 cut(s)	672
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	133, 220, 395
BmuI	ACTGGG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	31, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	281, 458
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	2 cut(s)	31, 238
BseGI	GGATG	2 cut(s)	611, 768
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	98, 564
BseNI	ACTGG	2 cut(s)	281, 458
BseXI	GCAGC	5 cut(s)	169, 445, 572, 574, 623
BsgI	GTGCAG	2 cut(s)	499, 676
BshFI	GGCC	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	707, 813
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	780
BsmFI	GGGAC	2 cut(s)	707, 813
BsnI	GGCC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	780
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	667, 721
BspACI	CCGC	2 cut(s)	200, 436
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	2 cut(s)	97, 563
BspLI	GGNNCC	1 cut(s)	723
BspPI	GGATC	3 cut(s)	662, 716, 729
BspTNI	GGTCTC	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	281, 458
BssECI	CCNNGG	2 cut(s)	31, 238
BssMI	GATC	2 cut(s)	667, 721
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	4 cut(s)	44, 208, 313, 827
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	5 cut(s)	235, 307, 328, 431, 438
BstDEI	CTNAG	2 cut(s)	84, 550
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	611, 768
BstKTI	GATC	2 cut(s)	670, 724
BstMAI	GTCTC	1 cut(s)	780
BstMBI	GATC	2 cut(s)	667, 721
BstNI	CCWGG	1 cut(s)	672
BstSCI	CCNGG	1 cut(s)	670
BstSFI	CTRYAG	1 cut(s)	649
BstV1I	GCAGC	5 cut(s)	169, 445, 572, 574, 623
BstX2I	RGATCY	2 cut(s)	667, 721
BstYI	RGATCY	2 cut(s)	667, 721
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	611, 768
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	5 cut(s)	274, 309, 451, 633, 823
Cac8I	GCNNGC	5 cut(s)	235, 307, 328, 431, 438
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	84, 550
DpnI	GATC	2 cut(s)	669, 723
DpnII	GATC	2 cut(s)	667, 721
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	134
FaqI	GGGAC	2 cut(s)	707, 813
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	183, 434, 561, 588, 612
FokI	GGATG	2 cut(s)	618, 775
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	5 cut(s)	183, 434, 561, 588, 612
GluI	GCNGC	5 cut(s)	183, 434, 561, 588, 612
HaeIII	GGCC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	1 cut(s)	166
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	73, 287, 635
Hpy188I	TCNGA	4 cut(s)	381, 391, 573, 806
Hpy188III	TCNNGA	2 cut(s)	106, 665
Hpy8I	GTNNAC	3 cut(s)	73, 287, 635
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	4 cut(s)	44, 208, 313, 827
HpyCH4IV	ACGT	2 cut(s)	75, 297
HpyF3I	CTNAG	2 cut(s)	84, 550
HpySE526I	ACGT	2 cut(s)	75, 297
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	667, 721
LmnI	GCTCC	3 cut(s)	505, 568, 821
Lsp1109I	GCAGC	5 cut(s)	169, 445, 572, 574, 623
LweI	GCATC	3 cut(s)	133, 220, 395
MaeII	ACGT	2 cut(s)	75, 297
MaeIII	GTNAC	2 cut(s)	76, 580
MalI	GATC	2 cut(s)	669, 723
MboI	GATC	2 cut(s)	667, 721
MboII	GAAGA	2 cut(s)	164, 490
MflI	RGATCY	2 cut(s)	667, 721
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	5 cut(s)	341, 465, 748, 769, 838
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	6 cut(s)	151, 180, 237, 295, 712, 735
MseI	TTAA	4 cut(s)	51, 344, 458, 731
MslI	CAYNNNNRTG	2 cut(s)	405, 757
MspA1I	CMGCKG	1 cut(s)	436
MspR9I	CCNGG	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	672
NdeII	GATC	2 cut(s)	667, 721
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	723
PkrI	GCNGC	5 cut(s)	184, 435, 562, 589, 613
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	667, 721
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	2 cut(s)	405, 757
SaqAI	TTAA	4 cut(s)	51, 344, 458, 731
SatI	GCNGC	5 cut(s)	183, 434, 561, 588, 612
Sau3AI	GATC	2 cut(s)	667, 721
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	3 cut(s)	133, 220, 395
SfcI	CTRYAG	1 cut(s)	649
SmiMI	CAYNNNNRTG	2 cut(s)	405, 757
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
Sse9I	AATT	5 cut(s)	341, 465, 748, 769, 838
SsiI	CCGC	2 cut(s)	200, 436
SspI	AATATT	1 cut(s)	736
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	4 cut(s)	44, 208, 313, 827
TaiI	ACGT	2 cut(s)	78, 300
TasI	AATT	5 cut(s)	341, 465, 748, 769, 838
Tru1I	TTAA	4 cut(s)	51, 344, 458, 731
Tru9I	TTAA	4 cut(s)	51, 344, 458, 731
TscAI	CASTG	5 cut(s)	281, 316, 458, 633, 830
TseI	GCWGC	5 cut(s)	182, 433, 560, 587, 611
TspDTI	ATGAA	4 cut(s)	164, 560, 609, 741
TspRI	CASTG	5 cut(s)	281, 316, 458, 633, 830
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.