Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

62477569 .. 62485326

Gene Structure 7758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG396800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGCAGTTCACGTTACTGCTCAGGTAGGAGTCCTCTTCATTGGGCTGCGTATAAGGGATTTGAGAATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAACGTGGAGGCTTGCACTGTGCTTGTTTATGCCGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTTTCCAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTTTTCTGCACAATAATCATTCAAACAGTTCTCTTTATGAACTCAGTTCTTGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTATTGGTTTCTGGGGATGGGCAGCTACTTCATTTGCAGTGGGTTCGCTCATTATGTTCTACAGGTGCAGTAGTCAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTAAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGTCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGCCCCTGGATATCTAATTGTGTTGGCAAGGTAAGTTTATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

259

Amino Acids

28.72

Weight (kDa)

9.08

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	13 - 98	1.6e-14	Ankyrin repeats (3 copies)
Ank_4	PF13637	13 - 61	9.6e-08	Ankyrin repeats (many copies)
DHHC	PF01529	215 - 254	6.8e-18	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	3 cut(s)	527, 581, 594
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	395, 610
AjnI	CCWGG	2 cut(s)	535, 737
AluBI	AGCT	2 cut(s)	428, 479
AluI	AGCT	2 cut(s)	428, 479
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	3 cut(s)	527, 581, 594
ApeKI	GCWGC	6 cut(s)	47, 146, 298, 425, 452, 476
ApoI	RAATTY	1 cut(s)	330
AseI	ATTAAT	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	307
BbvI	GCAGC	6 cut(s)	34, 133, 310, 437, 439, 488
BccI	CCATC	3 cut(s)	465, 622, 735
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BciT130I	CCWGG	2 cut(s)	537, 739
BcoDI	GTCTC	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	514
BisI	GCNGC	6 cut(s)	48, 147, 299, 426, 453, 477
BlsI	GCNGC	6 cut(s)	49, 148, 300, 427, 454, 478
Bme1390I	CCNGG	2 cut(s)	537, 739
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	2 cut(s)	537, 739
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	85, 260
BmuI	ACTGGG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	706
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	103, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	146, 323
Bse3DI	GCAATG	1 cut(s)	730
BseBI	CCWGG	2 cut(s)	537, 739
BseCI	ATCGAT	1 cut(s)	706
BseDI	CCNNGG	2 cut(s)	103, 737
BseGI	GGATG	2 cut(s)	476, 633
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	2 cut(s)	36, 429
BseNI	ACTGG	2 cut(s)	146, 323
BseXI	GCAGC	6 cut(s)	34, 133, 310, 437, 439, 488
BsgI	GTGCAG	2 cut(s)	364, 541
BshVI	ATCGAT	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	572, 678
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	645
BsmFI	GGGAC	2 cut(s)	572, 678
Bso31I	GGTCTC	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	532, 586
BspACI	CCGC	1 cut(s)	301
BspCNI	CTCAG	2 cut(s)	35, 428
BspDI	ATCGAT	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	588
BspPI	GGATC	3 cut(s)	527, 581, 594
BspTNI	GGTCTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	146, 323
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	103, 737
BssMI	GATC	2 cut(s)	532, 586
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	2 cut(s)	537, 739
Bst4CI	ACNGT	5 cut(s)	73, 178, 400, 692, 720
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	5 cut(s)	100, 172, 193, 296, 303
BstDEI	CTNAG	2 cut(s)	22, 415
BstF5I	GGATG	2 cut(s)	476, 633
BstKTI	GATC	2 cut(s)	535, 589
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	2 cut(s)	532, 586
BstNI	CCWGG	2 cut(s)	537, 739
BstNSI	RCATGY	1 cut(s)	702
BstSCI	CCNGG	2 cut(s)	535, 737
BstSFI	CTRYAG	1 cut(s)	514
BstV1I	GCAGC	6 cut(s)	34, 133, 310, 437, 439, 488
BstX2I	RGATCY	2 cut(s)	532, 586
BstYI	RGATCY	2 cut(s)	532, 586
Bsu15I	ATCGAT	1 cut(s)	706
BsuTUI	ATCGAT	1 cut(s)	706
BtsCI	GGATG	2 cut(s)	476, 633
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	5 cut(s)	139, 174, 316, 498, 688
Cac8I	GCNNGC	5 cut(s)	100, 172, 193, 296, 303
Cfr10I	RCCGGY	1 cut(s)	191
ClaI	ATCGAT	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	1 cut(s)	699
CviJI	RGCY	9 cut(s)	47, 102, 146, 170, 294, 305, 428, 479, 540
CviKI_1	RGCY	9 cut(s)	47, 102, 146, 170, 294, 305, 428, 479, 540
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	22, 415
DpnI	GATC	2 cut(s)	534, 588
DpnII	GATC	2 cut(s)	532, 586
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	645
Eco32I	GATATC	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	535, 737
EcoRV	GATATC	1 cut(s)	744
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	702
FaiI	YATR	8 cut(s)	54, 189, 410, 509, 573, 575, 625, 700
FaqI	GGGAC	2 cut(s)	572, 678
FatI	CATG	1 cut(s)	698
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	6 cut(s)	48, 147, 299, 426, 453, 477
FokI	GGATG	2 cut(s)	483, 640
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	6 cut(s)	48, 147, 299, 426, 453, 477
GluI	GCNGC	6 cut(s)	48, 147, 299, 426, 453, 477
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	1 cut(s)	702
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	4 cut(s)	246, 256, 438, 671
Hpy188III	TCNNGA	1 cut(s)	530
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	5 cut(s)	73, 178, 400, 692, 720
HpyCH4IV	ACGT	2 cut(s)	13, 162
HpyF3I	CTNAG	2 cut(s)	22, 415
HpySE526I	ACGT	2 cut(s)	13, 162
Hsp92II	CATG	1 cut(s)	702
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	532, 586
LmnI	GCTCC	3 cut(s)	370, 433, 686
Lsp1109I	GCAGC	6 cut(s)	34, 133, 310, 437, 439, 488
LweI	GCATC	2 cut(s)	85, 260
MaeII	ACGT	2 cut(s)	13, 162
MaeIII	GTNAC	2 cut(s)	14, 445
MalI	GATC	2 cut(s)	534, 588
MboI	GATC	2 cut(s)	532, 586
MboII	GAAGA	2 cut(s)	29, 355
MflI	RGATCY	2 cut(s)	532, 586
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	5 cut(s)	206, 330, 613, 634, 748
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	45, 102, 160, 577, 600
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	4 cut(s)	152, 209, 323, 596
MslI	CAYNNNNRTG	2 cut(s)	270, 622
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	537, 739
MvaI	CCWGG	2 cut(s)	537, 739
NaeI	GCCGGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	532, 586
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	702
NlaIV	GGNNCC	1 cut(s)	588
NspI	RCATGY	1 cut(s)	702
PciI	ACATGT	1 cut(s)	698
PdiI	GCCGGC	1 cut(s)	193
PkrI	GCNGC	6 cut(s)	49, 148, 300, 427, 454, 478
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PscI	ACATGT	1 cut(s)	698
PshBI	ATTAAT	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	535, 737
PspGI	CCWGG	2 cut(s)	535, 737
PspN4I	GGNNCC	1 cut(s)	588
PsuI	RGATCY	2 cut(s)	532, 586
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	2 cut(s)	270, 622
SaqAI	TTAA	4 cut(s)	152, 209, 323, 596
SatI	GCNGC	6 cut(s)	48, 147, 299, 426, 453, 477
Sau3AI	GATC	2 cut(s)	532, 586
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	537, 739
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	85, 260
SfcI	CTRYAG	1 cut(s)	514
SmiMI	CAYNNNNRTG	2 cut(s)	270, 622
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	5 cut(s)	206, 330, 613, 634, 748
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	535, 737
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	5 cut(s)	73, 178, 400, 692, 720
TaiI	ACGT	2 cut(s)	16, 165
TaqI	TCGA	1 cut(s)	706
TasI	AATT	5 cut(s)	206, 330, 613, 634, 748
Tru1I	TTAA	4 cut(s)	152, 209, 323, 596
Tru9I	TTAA	4 cut(s)	152, 209, 323, 596
TscAI	CASTG	5 cut(s)	146, 181, 323, 498, 695
TseI	GCWGC	6 cut(s)	47, 146, 298, 425, 452, 476
TspDTI	ATGAA	4 cut(s)	29, 425, 474, 606
TspRI	CASTG	5 cut(s)	146, 181, 323, 498, 695
VspI	ATTAAT	1 cut(s)	209
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.