Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

44985304 .. 45003129

Gene Structure 17826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTGCTCTTGCAGAATGGAGCTAGGGGTTGAGGCTGCTGATGTAAACGGGTACCGGGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATGTGGAGGCTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTCTCTAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTGTTGTGCACAATAATCAGTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTGTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGCCATATAGATACAGAGGATCCTCTGTTGAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGCCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCGAGATTTCTTTATTTTAATCTGCATGGGAACATTGACATCAACCATTTCTGCTGGTGTCACAGTTCAAAGGATTTGGACTGCAGTGCCAGCATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAAGTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTACGACTCTGACAACGGCACAAGCATCTCAGGGGATGAATTACATCCCAGACCCTGATTACCAGATAGCTCGAAATATCACAACTAATGAACTGGCAAATGCTATTCGTTATGGGTATCTTCGTGGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACTGTGCAGATTTTTTCATTCGGGGCTATACAGACGATGATGAAATTGCCTGGCCTCCATTGCAGCAGGTTGCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

445

Amino Acids

49.54

Weight (kDa)

8.07

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	14 - 80	2.1e-09	Ankyrin repeats (3 copies)
Ank_4	PF13637	22 - 71	8.6e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	78 - 140	9.3e-09	Ankyrin repeats (3 copies)
DHHC	PF01529	257 - 394	5.4e-30	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1315
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	2 cut(s)	51, 1248
AciI	CCGC	2 cut(s)	427, 1222
AclWI	GGATC	3 cut(s)	653, 707, 720
AcsI	RAATTY	1 cut(s)	456
AfaI	GTAC	3 cut(s)	53, 256, 641
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	824
AgsI	TTSAA	5 cut(s)	100, 724, 736, 965, 1031
AjnI	CCWGG	3 cut(s)	661, 863, 1307
AluBI	AGCT	4 cut(s)	22, 554, 605, 1154
AluI	AGCT	4 cut(s)	22, 554, 605, 1154
Alw21I	GWGCWC	2 cut(s)	8, 509
Alw26I	GTCTC	1 cut(s)	771
Alw44I	GTGCAC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	653, 707, 720
AlwNI	CAGNNNCTG	1 cut(s)	1139
AoxI	GGCC	1 cut(s)	1310
ApaLI	GTGCAC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	456
AseI	ATTAAT	1 cut(s)	335
Asp718I	GGTACC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	1211
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	352
AsuII	TTCGAA	1 cut(s)	1228
AvaII	GGWCC	1 cut(s)	1211
BaeGI	GKGCMC	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	712
BanI	GGYRCC	2 cut(s)	51, 1248
BanII	GRGCYC	1 cut(s)	433
Bbv12I	GWGCWC	2 cut(s)	8, 509
BccI	CCATC	4 cut(s)	591, 748, 861, 1211
BceAI	ACGGC	2 cut(s)	1116, 1236
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BciT130I	CCWGG	3 cut(s)	663, 865, 1309
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	771
BfaI	CTAG	2 cut(s)	23, 417
BfmI	CTRYAG	1 cut(s)	978
BfuAI	ACCTGC	1 cut(s)	1315
BglI	GCCNNNNNGGC	1 cut(s)	991
Bme1390I	CCNGG	4 cut(s)	56, 663, 865, 1309
Bme18I	GGWCC	1 cut(s)	1211
BmgT120I	GGNCC	1 cut(s)	1211
BmiI	GGNNCC	3 cut(s)	53, 714, 1250
BmrFI	CCNGG	4 cut(s)	56, 663, 865, 1309
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	4 cut(s)	124, 211, 386, 1118
BmuI	ACTGGG	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	1228
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	832
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	2 cut(s)	229, 863
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	4 cut(s)	272, 449, 1182, 1332
Bse3DI	GCAATG	1 cut(s)	1316
BseBI	CCWGG	3 cut(s)	663, 865, 1309
BseCI	ATCGAT	1 cut(s)	832
BseDI	CCNNGG	2 cut(s)	229, 863
BseGI	GGATG	4 cut(s)	602, 759, 1125, 1128
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	1316
BseMII	CTCAG	3 cut(s)	89, 555, 1127
BseNI	ACTGG	4 cut(s)	272, 449, 1182, 1332
BseSI	GKGCMC	1 cut(s)	509
BsgI	GTGCAG	2 cut(s)	667, 1284
BshFI	GGCC	1 cut(s)	1312
BshNI	GGYRCC	2 cut(s)	51, 1248
BshVI	ATCGAT	1 cut(s)	832
BsiHKAI	GWGCWC	2 cut(s)	8, 509
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	698, 846
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	771
BsmFI	GGGAC	2 cut(s)	698, 846
BsnI	GGCC	1 cut(s)	1312
Bso31I	GGTCTC	1 cut(s)	771
Bsp119I	TTCGAA	1 cut(s)	1228
Bsp1286I	GDGCHC	3 cut(s)	8, 433, 509
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	2 cut(s)	658, 712
BspACI	CCGC	2 cut(s)	427, 1222
BspANI	GGCC	1 cut(s)	1312
BspCNI	CTCAG	3 cut(s)	88, 554, 1126
BspDI	ATCGAT	1 cut(s)	832
BspLI	GGNNCC	3 cut(s)	53, 714, 1250
BspMAI	CTGCAG	1 cut(s)	982
BspMI	ACCTGC	1 cut(s)	1315
BspPI	GGATC	3 cut(s)	653, 707, 720
BspT104I	TTCGAA	1 cut(s)	1228
BspT107I	GGYRCC	2 cut(s)	51, 1248
BspTNI	GGTCTC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	1316
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	4 cut(s)	272, 449, 1182, 1332
BssECI	CCNNGG	2 cut(s)	229, 863
BssMI	GATC	2 cut(s)	658, 712
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	3 cut(s)	663, 865, 1309
Bst4CI	ACNGT	6 cut(s)	199, 304, 526, 846, 961, 1262
Bst6I	CTCTTC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	1228
BstC8I	GCNNGC	6 cut(s)	226, 298, 319, 422, 429, 987
BstDEI	CTNAG	3 cut(s)	75, 541, 1113
BstF5I	GGATG	4 cut(s)	602, 759, 1125, 1128
BstKTI	GATC	2 cut(s)	661, 715
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	2 cut(s)	658, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	986, 991, 1318
BstNI	CCWGG	3 cut(s)	663, 865, 1309
BstNSI	RCATGY	1 cut(s)	828
BstSCI	CCNGG	4 cut(s)	54, 661, 863, 1307
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	1 cut(s)	509
BstX2I	RGATCY	2 cut(s)	658, 712
BstYI	RGATCY	2 cut(s)	658, 712
Bsu15I	ATCGAT	1 cut(s)	832
BsuRI	GGCC	1 cut(s)	1312
BsuTUI	ATCGAT	1 cut(s)	832
BtsCI	GGATG	4 cut(s)	602, 759, 1125, 1128
BtsI	GCAGTG	3 cut(s)	624, 814, 987
BtsIMutI	CAGTG	6 cut(s)	265, 300, 442, 624, 814, 987
BveI	ACCTGC	1 cut(s)	1315
Cac8I	GCNNGC	6 cut(s)	226, 298, 319, 422, 429, 987
CaiI	CAGNNNCTG	1 cut(s)	1139
Cfr13I	GGNCC	1 cut(s)	1211
ClaI	ATCGAT	1 cut(s)	832
Csp6I	GTAC	3 cut(s)	52, 255, 640
CviAII	CATG	7 cut(s)	122, 314, 825, 922, 990, 1019, 1244
CviQI	GTAC	3 cut(s)	52, 255, 640
DdeI	CTNAG	3 cut(s)	75, 541, 1113
DpnI	GATC	2 cut(s)	660, 714
DpnII	GATC	2 cut(s)	658, 712
DraI	TTTAAA	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	870
Eco47I	GGWCC	1 cut(s)	1211
EcoRII	CCWGG	3 cut(s)	661, 863, 1307
EcoRV	GATATC	1 cut(s)	870
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	7 cut(s)	125, 317, 828, 925, 993, 1022, 1247
FaqI	GGGAC	2 cut(s)	698, 846
FatI	CATG	7 cut(s)	121, 313, 824, 921, 989, 1018, 1243
FauI	CCCGC	1 cut(s)	420
FokI	GGATG	4 cut(s)	609, 766, 1115, 1132
FriOI	GRGCYC	1 cut(s)	433
FspBI	CTAG	2 cut(s)	23, 417
HaeIII	GGCC	1 cut(s)	1312
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	7 cut(s)	125, 317, 828, 925, 993, 1022, 1247
HinfI	GANTC	3 cut(s)	157, 1012, 1090
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	3 cut(s)	46, 64, 507
Hpy188I	TCNGA	5 cut(s)	372, 382, 564, 797, 1095
Hpy188III	TCNNGA	2 cut(s)	97, 1214
Hpy8I	GTNNAC	3 cut(s)	46, 64, 507
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	6 cut(s)	199, 304, 526, 846, 961, 1262
HpyCH4IV	ACGT	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	986, 991, 1318
HpyF3I	CTNAG	3 cut(s)	75, 541, 1113
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	7 cut(s)	125, 317, 828, 925, 993, 1022, 1247
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	658, 712
LmnI	GCTCC	4 cut(s)	19, 496, 559, 812
LweI	GCATC	4 cut(s)	124, 211, 386, 1118
MaeI	CTAG	2 cut(s)	23, 417
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	571, 955
MalI	GATC	2 cut(s)	660, 714
MboI	GATC	2 cut(s)	658, 712
MboII	GAAGA	5 cut(s)	155, 481, 668, 1013, 1196
MflI	RGATCY	2 cut(s)	658, 712
MhlI	GDGCHC	3 cut(s)	8, 433, 509
MluCI	AATT	7 cut(s)	332, 456, 739, 760, 874, 1123, 1302
MlyI	GAGTC	2 cut(s)	166, 1084
MnlI	CCTC	9 cut(s)	25, 142, 171, 228, 286, 422, 703, 726, 1323
MseI	TTAA	5 cut(s)	278, 335, 449, 914, 1336
MslI	CAYNNNNRTG	3 cut(s)	396, 748, 1054
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	4 cut(s)	56, 663, 865, 1309
MvaI	CCWGG	3 cut(s)	663, 865, 1309
MwoI	GCNNNNNNNGC	3 cut(s)	986, 991, 1318
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	658, 712
NlaIII	CATG	7 cut(s)	125, 317, 828, 925, 993, 1022, 1247
NlaIV	GGNNCC	3 cut(s)	53, 714, 1250
NmuCI	GTSAC	1 cut(s)	955
NspI	RCATGY	1 cut(s)	828
NspV	TTCGAA	1 cut(s)	1228
PciI	ACATGT	1 cut(s)	824
PfeI	GAWTC	1 cut(s)	1012
PleI	GAGTC	2 cut(s)	165, 1084
PpsI	GAGTC	2 cut(s)	165, 1084
PscI	ACATGT	1 cut(s)	824
PshBI	ATTAAT	1 cut(s)	335
Psp6I	CCWGG	3 cut(s)	661, 863, 1307
PspGI	CCWGG	3 cut(s)	661, 863, 1307
PspN4I	GGNNCC	3 cut(s)	53, 714, 1250
PspPI	GGNCC	1 cut(s)	1211
PstI	CTGCAG	1 cut(s)	982
PstNI	CAGNNNCTG	1 cut(s)	1139
PsuI	RGATCY	2 cut(s)	658, 712
RsaI	GTAC	3 cut(s)	53, 256, 641
RsaNI	GTAC	3 cut(s)	52, 255, 640
RseI	CAYNNNNRTG	3 cut(s)	396, 748, 1054
SaqAI	TTAA	5 cut(s)	278, 335, 449, 914, 1336
Sau3AI	GATC	2 cut(s)	658, 712
Sau96I	GGNCC	1 cut(s)	1211
SchI	GAGTC	2 cut(s)	166, 1084
ScrFI	CCNGG	4 cut(s)	56, 663, 865, 1309
SduI	GDGCHC	3 cut(s)	8, 433, 509
SfaNI	GCATC	4 cut(s)	124, 211, 386, 1118
SfcI	CTRYAG	1 cut(s)	978
SfuI	TTCGAA	1 cut(s)	1228
SinI	GGWCC	1 cut(s)	1211
SmiMI	CAYNNNNRTG	3 cut(s)	396, 748, 1054
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	7 cut(s)	332, 456, 739, 760, 874, 1123, 1302
SsiI	CCGC	2 cut(s)	427, 1222
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	2 cut(s)	23, 417
StyD4I	CCNGG	4 cut(s)	54, 661, 863, 1307
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	6 cut(s)	199, 304, 526, 846, 961, 1262
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	832, 1156, 1228
TasI	AATT	7 cut(s)	332, 456, 739, 760, 874, 1123, 1302
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	1 cut(s)	1012
Tru1I	TTAA	5 cut(s)	278, 335, 449, 914, 1336
Tru9I	TTAA	5 cut(s)	278, 335, 449, 914, 1336
TscAI	CASTG	6 cut(s)	272, 307, 449, 624, 821, 987
TseFI	GTSAC	1 cut(s)	955
Tsp45I	GTSAC	1 cut(s)	955
TspRI	CASTG	6 cut(s)	272, 307, 449, 624, 821, 987
VneI	GTGCAC	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	1211
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	828
XspI	CTAG	2 cut(s)	23, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.