Rh6AG164900

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003809
Physical Location & Seq
Reverse (-)
26337131 .. 26349839
12709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG164900.1

Sequence Viewer

Length: 1245 bp
ATGGTCTCTTCAGAGATAGAGATAGTCTCGTCGTCGTCGGACTCAAAACCCCTTGACCAAAACCCTACCGCCGTCGCCGTCGAGGTCCCTATAATCGACGTCTTCTCTGCTTCTGCTTACGGCGATTTCCCCAAACTCAGGAAGTTCGTCGAGGAAGACGGTGCCTCTCTCTCCCAGCCTGATGGCCATGGCTACTACGCACTCCATTGGGCTGCTCTCAATAACTTCCCTGATATCGCCCACTACATAATTCAGCATGGCGGGGACGTGAATGCCACCGAGAATATAGGGCAGACAGCATTGCATTGGGCAGCCGTGCAGGGTGCAATCGCAGCGGCTGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCTGCTGATGTAAATGGGTACCGGGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATGTGGAGGCTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTCTCTAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTGTTGTGCACAATAATCAGTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTGTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTGAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGCCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGCAAGGTAAGTTTATTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

414

Amino Acids

45.07

Weight (kDa)

6.3

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 37 - 126 1.1e-12 Ankyrin repeats (3 copies)
Ank_5 PF13857 54 - 102 8.2e-06 Ankyrin repeats (many copies)
Ank_3 PF13606 63 - 92 6.2e-06 Ankyrin repeat
Ank_4 PF13637 101 - 146 4.1e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 128 - 193 3.8e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 191 - 253 9.3e-09 Ankyrin repeats (3 copies)
DHHC PF01529 370 - 409 1.3e-17 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 161, 390
AciI CCGC 4 cut(s) 69, 261, 335, 766
AclWI GGATC 3 cut(s) 992, 1046, 1059
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 3 cut(s) 392, 595, 980
AfiI CCNNNNNNNGG 2 cut(s) 138, 766
AflIII ACRYGT 1 cut(s) 1163
AgsI TTSAA 3 cut(s) 439, 1063, 1075
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 2 cut(s) 1000, 1202
AluBI AGCT 3 cut(s) 362, 893, 944
AluI AGCT 3 cut(s) 362, 893, 944
Alw21I GWGCWC 2 cut(s) 348, 848
Alw26I GTCTC 3 cut(s) 10, 31, 1110
Alw44I GTGCAC 1 cut(s) 844
AlwI GGATC 3 cut(s) 992, 1046, 1059
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 1 cut(s) 184
ApaLI GTGCAC 1 cut(s) 844
ApoI RAATTY 1 cut(s) 795
AseI ATTAAT 1 cut(s) 674
Asp718I GGTACC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 691
AvaII GGWCC 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 848
BalI TGGCCA 1 cut(s) 186
BamHI GGATCC 1 cut(s) 1051
BanI GGYRCC 2 cut(s) 161, 390
BanII GRGCYC 1 cut(s) 772
BbsI GAAGAC 2 cut(s) 94, 162
Bbv12I GWGCWC 2 cut(s) 348, 848
BccI CCATC 4 cut(s) 176, 930, 1087, 1200
BceAI ACGGC 4 cut(s) 56, 62, 136, 299
BcgI CGANNNNNNTGC 2 cut(s) 945, 979
BciT130I CCWGG 2 cut(s) 1002, 1204
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 10, 31, 1110
BfaI CTAG 2 cut(s) 363, 756
Bme1390I CCNGG 3 cut(s) 395, 1002, 1204
Bme18I GGWCC 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 4 cut(s) 87, 163, 392, 1053
BmrFI CCNGG 3 cut(s) 395, 1002, 1204
BmrI ACTGGG 1 cut(s) 616
BmsI GCATC 3 cut(s) 463, 550, 725
BmuI ACTGGG 1 cut(s) 616
BpiI GAAGAC 2 cut(s) 94, 162
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpuEI CTTGAG 1 cut(s) 756
BpuMI CCSGG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 1171
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 2 cut(s) 10, 1110
BsaJI CCNNGG 3 cut(s) 187, 568, 1202
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 766
Bse1I ACTGG 2 cut(s) 611, 788
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 2 cut(s) 1002, 1204
BseCI ATCGAT 1 cut(s) 1171
BseDI CCNNGG 3 cut(s) 187, 568, 1202
BseGI GGATG 2 cut(s) 941, 1098
BseLI CCNNNNNNNGG 2 cut(s) 138, 766
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 3 cut(s) 151, 428, 894
BseNI ACTGG 2 cut(s) 611, 788
BseSI GKGCMC 1 cut(s) 848
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 2 cut(s) 338, 1006
BshFI GGCC 1 cut(s) 186
BshNI GGYRCC 2 cut(s) 161, 390
BshVI ATCGAT 1 cut(s) 1171
BsiHKAI GWGCWC 2 cut(s) 348, 848
BsiSI CCGG 1 cut(s) 394
BslFI GGGAC 4 cut(s) 71, 278, 1037, 1185
BslI CCNNNNNNNGG 2 cut(s) 138, 766
BsmAI GTCTC 3 cut(s) 10, 31, 1110
BsmFI GGGAC 4 cut(s) 71, 278, 1037, 1185
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 2 cut(s) 10, 1110
Bsp1286I GDGCHC 3 cut(s) 348, 772, 848
Bsp1407I TGTACA 1 cut(s) 978
Bsp143I GATC 2 cut(s) 997, 1051
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 4 cut(s) 69, 261, 335, 766
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 3 cut(s) 150, 427, 893
BspDI ATCGAT 1 cut(s) 1171
BspLI GGNNCC 4 cut(s) 87, 163, 392, 1053
BspPI GGATC 3 cut(s) 992, 1046, 1059
BspT107I GGYRCC 2 cut(s) 161, 390
BspTNI GGTCTC 2 cut(s) 10, 1110
BsrDI GCAATG 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 978
BsrI ACTGG 2 cut(s) 611, 788
BssECI CCNNGG 3 cut(s) 187, 568, 1202
BssMI GATC 2 cut(s) 997, 1051
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 187, 568
Bst2UI CCWGG 2 cut(s) 1002, 1204
Bst4CI ACNGT 5 cut(s) 161, 538, 643, 865, 1185
Bst6I CTCTTC 2 cut(s) 13, 507
BstACI GRCGYC 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 978
BstC8I GCNNGC 5 cut(s) 565, 637, 658, 761, 768
BstDEI CTNAG 3 cut(s) 137, 414, 880
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 941, 1098
BstKTI GATC 2 cut(s) 1000, 1054
BstMAI GTCTC 3 cut(s) 10, 31, 1110
BstMBI GATC 2 cut(s) 997, 1051
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 2 cut(s) 1002, 1204
BstNSI RCATGY 1 cut(s) 1167
BstSCI CCNGG 3 cut(s) 393, 1000, 1202
BstSLI GKGCMC 1 cut(s) 848
BstV2I GAAGAC 2 cut(s) 94, 162
BstX2I RGATCY 2 cut(s) 997, 1051
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 2 cut(s) 997, 1051
Bsu15I ATCGAT 1 cut(s) 1171
BsuRI GGCC 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 1171
BtgI CCRYGG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 941, 1098
BtsI GCAGTG 2 cut(s) 963, 1153
BtsIMutI CAGTG 5 cut(s) 604, 639, 781, 963, 1153
Cac8I GCNNGC 5 cut(s) 565, 637, 658, 761, 768
CaiI CAGNNNCTG 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 1171
Csp6I GTAC 3 cut(s) 391, 594, 979
CviAII CATG 5 cut(s) 188, 257, 461, 653, 1164
CviQI GTAC 3 cut(s) 391, 594, 979
DdeI CTNAG 3 cut(s) 137, 414, 880
DpnI GATC 2 cut(s) 999, 1053
DpnII GATC 2 cut(s) 997, 1051
DraI TTTAAA 1 cut(s) 618
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 13, 507
EarI CTCTTC 2 cut(s) 13, 507
Eco130I CCWWGG 2 cut(s) 187, 568
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 2 cut(s) 10, 1110
Eco32I GATATC 2 cut(s) 235, 1209
Eco47I GGWCC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 1000, 1202
EcoRV GATATC 2 cut(s) 235, 1209
EcoT14I CCWWGG 2 cut(s) 187, 568
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 2 cut(s) 187, 568
FaeI CATG 5 cut(s) 191, 260, 464, 656, 1167
FaqI GGGAC 4 cut(s) 71, 278, 1037, 1185
FatI CATG 5 cut(s) 187, 256, 460, 652, 1163
FauI CCCGC 2 cut(s) 254, 759
FokI GGATG 2 cut(s) 948, 1105
FriOI GRGCYC 1 cut(s) 772
FspBI CTAG 2 cut(s) 363, 756
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 5 cut(s) 191, 260, 464, 656, 1167
HinfI GANTC 2 cut(s) 41, 496
HpaII CCGG 1 cut(s) 394
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 2 cut(s) 403, 846
Hpy188I TCNGA 6 cut(s) 13, 40, 711, 721, 903, 1136
Hpy188III TCNNGA 2 cut(s) 139, 436
Hpy8I GTNNAC 2 cut(s) 403, 846
Hpy99I CGWCG 7 cut(s) 34, 37, 40, 77, 83, 101, 152
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 5 cut(s) 161, 538, 643, 865, 1185
HpyCH4IV ACGT 3 cut(s) 99, 267, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 3 cut(s) 137, 414, 880
HpySE526I ACGT 3 cut(s) 99, 267, 405
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 5 cut(s) 191, 260, 464, 656, 1167
KpnI GGTACC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 997, 1051
LmnI GCTCC 4 cut(s) 359, 835, 898, 1151
LweI GCATC 3 cut(s) 463, 550, 725
MaeI CTAG 2 cut(s) 363, 756
MaeII ACGT 3 cut(s) 99, 267, 405
MaeIII GTNAC 1 cut(s) 910
MalI GATC 2 cut(s) 999, 1053
MboI GATC 2 cut(s) 997, 1051
MboII GAAGA 5 cut(s) 94, 167, 494, 820, 1007
MflI RGATCY 2 cut(s) 997, 1051
MhlI GDGCHC 3 cut(s) 348, 772, 848
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 6 cut(s) 249, 671, 795, 1078, 1099, 1213
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 2 cut(s) 35, 505
MmeI TCCRAC 1 cut(s) 18
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 3 cut(s) 617, 674, 788
MslI CAYNNNNRTG 2 cut(s) 735, 1087
Msp20I TGGCCA 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 335, 766
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 3 cut(s) 395, 1002, 1204
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 2 cut(s) 1002, 1204
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 187
NdeII GATC 2 cut(s) 997, 1051
NlaIII CATG 5 cut(s) 191, 260, 464, 656, 1167
NlaIV GGNNCC 4 cut(s) 87, 163, 392, 1053
NspI RCATGY 1 cut(s) 1167
PciI ACATGT 1 cut(s) 1163
PctI GAATGC 1 cut(s) 277
PleI GAGTC 2 cut(s) 35, 504
PpsI GAGTC 2 cut(s) 35, 504
PpuMI RGGWCCY 1 cut(s) 85
PscI ACATGT 1 cut(s) 1163
PshBI ATTAAT 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 1000, 1202
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 2 cut(s) 1000, 1202
PspN4I GGNNCC 4 cut(s) 87, 163, 392, 1053
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 2 cut(s) 997, 1051
RsaI GTAC 3 cut(s) 392, 595, 980
RsaNI GTAC 3 cut(s) 391, 594, 979
RseI CAYNNNNRTG 2 cut(s) 735, 1087
SaqAI TTAA 3 cut(s) 617, 674, 788
Sau3AI GATC 2 cut(s) 997, 1051
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 35, 505
ScrFI CCNGG 3 cut(s) 395, 1002, 1204
SduI GDGCHC 3 cut(s) 348, 772, 848
SfaNI GCATC 3 cut(s) 463, 550, 725
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 735, 1087
SmlI CTYRAG 1 cut(s) 771
SmoI CTYRAG 1 cut(s) 771
Sse9I AATT 6 cut(s) 249, 671, 795, 1078, 1099, 1213
SsiI CCGC 4 cut(s) 69, 261, 335, 766
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 363, 756
StyD4I CCNGG 3 cut(s) 393, 1000, 1202
StyI CCWWGG 2 cut(s) 187, 568
TaaI ACNGT 5 cut(s) 161, 538, 643, 865, 1185
TaiI ACGT 3 cut(s) 102, 270, 408
TaqI TCGA 4 cut(s) 81, 96, 150, 1171
TasI AATT 6 cut(s) 249, 671, 795, 1078, 1099, 1213
TatI WGTACW 1 cut(s) 978
TauI GCSGC 1 cut(s) 338
Tru1I TTAA 3 cut(s) 617, 674, 788
Tru9I TTAA 3 cut(s) 617, 674, 788
TscAI CASTG 5 cut(s) 611, 646, 788, 963, 1160
TspDTI ATGAA 5 cut(s) 494, 641, 890, 939, 1071
TspRI CASTG 5 cut(s) 611, 646, 788, 963, 1160
VneI GTGCAC 1 cut(s) 844
VpaK11BI GGWCC 1 cut(s) 85
VspI ATTAAT 1 cut(s) 674
XapI RAATTY 1 cut(s) 795
XceI RCATGY 1 cut(s) 1167
XspI CTAG 2 cut(s) 363, 756
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.