RchiOBHm_Chr6g0269021

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003809
Physical Location & Seq
Reverse (-)
26215098 .. 26227871
12774 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24131

Sequence Viewer

Length: 1647 bp
ATGGTCTCTTCAGAGATAGAGATAGTCTCGTCGTCGTCGTCGGACTCAAAACCCCTTGACCAAAACCCTACCGCCGTCGCCGTCGAGGTCCCTATAATCGACGTCTTCTCTGCTTCTGCTTACGGCGATTTTCCCAAACTCAGGAAGTTCGTCGAGGAAGACGGTGCCTCTCTCTCCCAGCCTGATGTCCATGGCTACTACGCACTCCATTGGGCTGCTCTCAATAACTTCCCTGATCTCGCCCACTACATAATTCAGCATGGCGGGGACGTGAATGCCACCGAGAATATAGGGCAGACAGCATTGCATTGGGCAGCCGTGCAGGGTGCAATCGCAGCGGCCGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCTGCTGATGTAAATGGGTACCGGGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCATTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTTAGGTTACTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATGTGGAGGCTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTCTCTAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAGGATTGCACATTTTGGTTTTGCTCCTATCTTGTTGTGCACAATAATCAGTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTGTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTGAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACATTGCCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCGAGATTTCTTTATTTTGATCTGCATGGGAACATTGACATCAACCATTTCTGCTGCTGTCACAGTTCAAAGGATTTGGACTGCAGTGCCAGCATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAAGTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTACGACTCTGACAACGGCACAAGCATCTCAGATTGCTCGAAATATCACAACTAATGAACTGGCAAATGCTATTCGTTATGGGTATCTTCGTGGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACTGTGCAGATTTTTTCATTCAGGGCTATACAGACGATGCTGAAATTGCCTGGCCTCCATTGCAGCAGGTTGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

548

Amino Acids

60.29

Weight (kDa)

6.48

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 38 - 127 5.5e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 102 - 147 6e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 129 - 194 3.4e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 184 - 254 3.4e-09 Ankyrin repeats (3 copies)
DHHC PF01529 371 - 498 3.9e-33 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
Acc36I ACCTGC 1 cut(s) 1624
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 3 cut(s) 164, 393, 1557
AciI CCGC 5 cut(s) 72, 264, 338, 769, 1531
AclWI GGATC 3 cut(s) 995, 1049, 1062
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 1 cut(s) 798
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 3 cut(s) 395, 598, 983
AfiI CCNNNNNNNGG 2 cut(s) 141, 769
AflIII ACRYGT 1 cut(s) 1166
AgsI TTSAA 5 cut(s) 442, 1066, 1078, 1307, 1373
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 3 cut(s) 1003, 1205, 1616
AluBI AGCT 3 cut(s) 365, 896, 947
AluI AGCT 3 cut(s) 365, 896, 947
Alw21I GWGCWC 2 cut(s) 351, 851
Alw26I GTCTC 3 cut(s) 10, 31, 1113
Alw44I GTGCAC 1 cut(s) 847
AlwI GGATC 3 cut(s) 995, 1049, 1062
AoxI GGCC 2 cut(s) 339, 1619
ApaLI GTGCAC 1 cut(s) 847
ApoI RAATTY 1 cut(s) 798
AseI ATTAAT 1 cut(s) 677
Asp718I GGTACC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 88, 1520
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 694
AsuII TTCGAA 1 cut(s) 1537
AvaII GGWCC 2 cut(s) 88, 1520
BaeGI GKGCMC 1 cut(s) 851
BamHI GGATCC 1 cut(s) 1054
BanI GGYRCC 3 cut(s) 164, 393, 1557
BanII GRGCYC 1 cut(s) 775
BbsI GAAGAC 2 cut(s) 97, 165
Bbv12I GWGCWC 2 cut(s) 351, 851
BccI CCATC 4 cut(s) 933, 1090, 1203, 1520
BceAI ACGGC 6 cut(s) 59, 65, 139, 302, 1458, 1545
BcgI CGANNNNNNTGC 2 cut(s) 948, 982
BciT130I CCWGG 3 cut(s) 1005, 1207, 1618
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 3 cut(s) 10, 31, 1113
BfaI CTAG 2 cut(s) 366, 759
BfmI CTRYAG 1 cut(s) 1320
BfuAI ACCTGC 1 cut(s) 1624
BglI GCCNNNNNGGC 1 cut(s) 1333
Bme1390I CCNGG 4 cut(s) 398, 1005, 1207, 1618
Bme18I GGWCC 2 cut(s) 88, 1520
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 88, 1520
BmiI GGNNCC 5 cut(s) 90, 166, 395, 1056, 1559
BmrFI CCNGG 4 cut(s) 398, 1005, 1207, 1618
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 5 cut(s) 466, 553, 728, 1460, 1594
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 2 cut(s) 97, 165
BplI GAGNNNNNCTC 2 cut(s) 11, 43
Bpu14I TTCGAA 1 cut(s) 1537
BpuEI CTTGAG 1 cut(s) 759
BpuMI CCSGG 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 1174
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 2 cut(s) 10, 1113
BsaJI CCNNGG 3 cut(s) 190, 571, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 769
Bse1I ACTGG 4 cut(s) 614, 791, 1491, 1641
Bse3DI GCAATG 4 cut(s) 302, 450, 1156, 1625
BseBI CCWGG 3 cut(s) 1005, 1207, 1618
BseCI ATCGAT 1 cut(s) 1174
BseDI CCNNGG 3 cut(s) 190, 571, 1205
BseGI GGATG 2 cut(s) 944, 1101
BseLI CCNNNNNNNGG 2 cut(s) 141, 769
BseMI GCAATG 4 cut(s) 302, 450, 1156, 1625
BseMII CTCAG 4 cut(s) 154, 431, 897, 1469
BseNI ACTGG 4 cut(s) 614, 791, 1491, 1641
BseSI GKGCMC 1 cut(s) 851
BseX3I CGGCCG 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 177
BsgI GTGCAG 3 cut(s) 341, 1009, 1593
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 2 cut(s) 341, 1621
BshNI GGYRCC 3 cut(s) 164, 393, 1557
BshVI ATCGAT 1 cut(s) 1174
BsiEI CGRYCG 1 cut(s) 342
BsiHKAI GWGCWC 2 cut(s) 351, 851
BsiSI CCGG 1 cut(s) 397
BslFI GGGAC 4 cut(s) 74, 281, 1040, 1188
BslI CCNNNNNNNGG 2 cut(s) 141, 769
BsmAI GTCTC 3 cut(s) 10, 31, 1113
BsmFI GGGAC 4 cut(s) 74, 281, 1040, 1188
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 2 cut(s) 341, 1621
Bso31I GGTCTC 2 cut(s) 10, 1113
Bsp119I TTCGAA 1 cut(s) 1537
Bsp1286I GDGCHC 3 cut(s) 351, 775, 851
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 4 cut(s) 235, 1000, 1054, 1257
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 5 cut(s) 72, 264, 338, 769, 1531
BspANI GGCC 2 cut(s) 341, 1621
BspCNI CTCAG 4 cut(s) 153, 430, 896, 1468
BspDI ATCGAT 1 cut(s) 1174
BspLI GGNNCC 5 cut(s) 90, 166, 395, 1056, 1559
BspMAI CTGCAG 1 cut(s) 1324
BspMI ACCTGC 1 cut(s) 1624
BspPI GGATC 3 cut(s) 995, 1049, 1062
BspT104I TTCGAA 1 cut(s) 1537
BspT107I GGYRCC 3 cut(s) 164, 393, 1557
BspTNI GGTCTC 2 cut(s) 10, 1113
BsrDI GCAATG 4 cut(s) 302, 450, 1156, 1625
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 4 cut(s) 614, 791, 1491, 1641
BssECI CCNNGG 3 cut(s) 190, 571, 1205
BssMI GATC 4 cut(s) 235, 1000, 1054, 1257
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 190, 571
Bst2UI CCWGG 3 cut(s) 1005, 1207, 1618
Bst4CI ACNGT 7 cut(s) 164, 541, 646, 868, 1188, 1303, 1571
Bst6I CTCTTC 2 cut(s) 13, 510
BstACI GRCGYC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 981
BstBI TTCGAA 1 cut(s) 1537
BstC8I GCNNGC 6 cut(s) 568, 640, 661, 764, 771, 1329
BstDEI CTNAG 4 cut(s) 140, 417, 883, 1455
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 944, 1101
BstKTI GATC 4 cut(s) 238, 1003, 1057, 1260
BstMAI GTCTC 3 cut(s) 10, 31, 1113
BstMBI GATC 4 cut(s) 235, 1000, 1054, 1257
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 5 cut(s) 335, 1328, 1333, 1613, 1627
BstNI CCWGG 3 cut(s) 1005, 1207, 1618
BstNSI RCATGY 1 cut(s) 1170
BstSCI CCNGG 4 cut(s) 396, 1003, 1205, 1616
BstSFI CTRYAG 1 cut(s) 1320
BstSLI GKGCMC 1 cut(s) 851
BstV2I GAAGAC 2 cut(s) 97, 165
BstX2I RGATCY 2 cut(s) 1000, 1054
BstYI RGATCY 2 cut(s) 1000, 1054
BstZI CGGCCG 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 1174
BsuRI GGCC 2 cut(s) 341, 1621
BsuTUI ATCGAT 1 cut(s) 1174
BtgI CCRYGG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 944, 1101
BtsI GCAGTG 2 cut(s) 966, 1329
BtsIMutI CAGTG 5 cut(s) 607, 642, 784, 966, 1329
BveI ACCTGC 1 cut(s) 1624
Cac8I GCNNGC 6 cut(s) 568, 640, 661, 764, 771, 1329
Cfr13I GGNCC 2 cut(s) 88, 1520
ClaI ATCGAT 1 cut(s) 1174
Csp6I GTAC 3 cut(s) 394, 597, 982
CviAII CATG 9 cut(s) 191, 260, 464, 656, 1167, 1264, 1332, 1361, 1553
CviQI GTAC 3 cut(s) 394, 597, 982
DdeI CTNAG 4 cut(s) 140, 417, 883, 1455
DpnI GATC 4 cut(s) 237, 1002, 1056, 1259
DpnII GATC 4 cut(s) 235, 1000, 1054, 1257
DraI TTTAAA 1 cut(s) 621
EaeI YGGCCR 1 cut(s) 339
EagI CGGCCG 1 cut(s) 339
Eam1104I CTCTTC 2 cut(s) 13, 510
EarI CTCTTC 2 cut(s) 13, 510
EclXI CGGCCG 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 190, 571
Eco24I GRGCYC 1 cut(s) 775
Eco31I GGTCTC 2 cut(s) 10, 1113
Eco32I GATATC 1 cut(s) 1212
Eco47I GGWCC 2 cut(s) 88, 1520
Eco52I CGGCCG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 3 cut(s) 1003, 1205, 1616
EcoRV GATATC 1 cut(s) 1212
EcoT14I CCWWGG 2 cut(s) 190, 571
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 2 cut(s) 190, 571
FaeI CATG 9 cut(s) 194, 263, 467, 659, 1170, 1267, 1335, 1364, 1556
FaqI GGGAC 4 cut(s) 74, 281, 1040, 1188
FatI CATG 9 cut(s) 190, 259, 463, 655, 1166, 1263, 1331, 1360, 1552
FauI CCCGC 2 cut(s) 257, 762
FokI GGATG 2 cut(s) 951, 1108
FriOI GRGCYC 1 cut(s) 775
FspBI CTAG 2 cut(s) 366, 759
GsaI CCCAGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 341, 1621
HapII CCGG 1 cut(s) 397
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 9 cut(s) 194, 263, 467, 659, 1170, 1267, 1335, 1364, 1556
HinfI GANTC 4 cut(s) 44, 499, 1354, 1432
HpaII CCGG 1 cut(s) 397
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 2 cut(s) 406, 849
Hpy188I TCNGA 8 cut(s) 13, 43, 714, 724, 906, 1139, 1437, 1458
Hpy188III TCNNGA 3 cut(s) 142, 439, 1523
Hpy8I GTNNAC 2 cut(s) 406, 849
Hpy99I CGWCG 8 cut(s) 34, 37, 40, 43, 80, 86, 104, 155
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 7 cut(s) 164, 541, 646, 868, 1188, 1303, 1571
HpyCH4IV ACGT 3 cut(s) 102, 270, 408
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 1328, 1333, 1613, 1627
HpyF3I CTNAG 4 cut(s) 140, 417, 883, 1455
HpySE526I ACGT 3 cut(s) 102, 270, 408
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 9 cut(s) 194, 263, 467, 659, 1170, 1267, 1335, 1364, 1556
KpnI GGTACC 1 cut(s) 397
Kzo9I GATC 4 cut(s) 235, 1000, 1054, 1257
LmnI GCTCC 4 cut(s) 362, 838, 901, 1154
LweI GCATC 5 cut(s) 466, 553, 728, 1460, 1594
MaeI CTAG 2 cut(s) 366, 759
MaeII ACGT 3 cut(s) 102, 270, 408
MaeIII GTNAC 3 cut(s) 546, 913, 1297
MalI GATC 4 cut(s) 237, 1002, 1056, 1259
MboI GATC 4 cut(s) 235, 1000, 1054, 1257
MboII GAAGA 6 cut(s) 97, 170, 497, 1010, 1355, 1505
MflI RGATCY 2 cut(s) 1000, 1054
MhlI GDGCHC 3 cut(s) 351, 775, 851
MluCI AATT 7 cut(s) 252, 674, 798, 1081, 1102, 1216, 1611
MlyI GAGTC 3 cut(s) 38, 508, 1426
MmeI TCCRAC 1 cut(s) 21
MseI TTAA 4 cut(s) 620, 677, 791, 1645
MslI CAYNNNNRTG 3 cut(s) 738, 1090, 1396
MspA1I CMGCKG 2 cut(s) 338, 769
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 4 cut(s) 398, 1005, 1207, 1618
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 3 cut(s) 1005, 1207, 1618
MwoI GCNNNNNNNGC 5 cut(s) 335, 1328, 1333, 1613, 1627
NciI CCSGG 1 cut(s) 398
NcoI CCATGG 1 cut(s) 190
NdeII GATC 4 cut(s) 235, 1000, 1054, 1257
NlaIII CATG 9 cut(s) 194, 263, 467, 659, 1170, 1267, 1335, 1364, 1556
NlaIV GGNNCC 5 cut(s) 90, 166, 395, 1056, 1559
NmuCI GTSAC 1 cut(s) 1297
NspI RCATGY 1 cut(s) 1170
NspV TTCGAA 1 cut(s) 1537
PciI ACATGT 1 cut(s) 1166
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 339
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 1354
PleI GAGTC 3 cut(s) 38, 507, 1426
PpsI GAGTC 3 cut(s) 38, 507, 1426
PpuMI RGGWCCY 1 cut(s) 88
PscI ACATGT 1 cut(s) 1166
PshBI ATTAAT 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 3 cut(s) 1003, 1205, 1616
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 3 cut(s) 1003, 1205, 1616
PspN4I GGNNCC 5 cut(s) 90, 166, 395, 1056, 1559
PspPI GGNCC 2 cut(s) 88, 1520
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 1 cut(s) 1324
PsuI RGATCY 2 cut(s) 1000, 1054
RsaI GTAC 3 cut(s) 395, 598, 983
RsaNI GTAC 3 cut(s) 394, 597, 982
RseI CAYNNNNRTG 3 cut(s) 738, 1090, 1396
SaqAI TTAA 4 cut(s) 620, 677, 791, 1645
Sau3AI GATC 4 cut(s) 235, 1000, 1054, 1257
Sau96I GGNCC 2 cut(s) 88, 1520
SchI GAGTC 3 cut(s) 38, 508, 1426
ScrFI CCNGG 4 cut(s) 398, 1005, 1207, 1618
SduI GDGCHC 3 cut(s) 351, 775, 851
SfaNI GCATC 5 cut(s) 466, 553, 728, 1460, 1594
SfcI CTRYAG 1 cut(s) 1320
SfuI TTCGAA 1 cut(s) 1537
SinI GGWCC 2 cut(s) 88, 1520
SmiMI CAYNNNNRTG 3 cut(s) 738, 1090, 1396
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
Sse9I AATT 7 cut(s) 252, 674, 798, 1081, 1102, 1216, 1611
SsiI CCGC 5 cut(s) 72, 264, 338, 769, 1531
SspI AATATT 1 cut(s) 1069
SspMI CTAG 2 cut(s) 366, 759
StyD4I CCNGG 4 cut(s) 396, 1003, 1205, 1616
StyI CCWWGG 2 cut(s) 190, 571
TaaI ACNGT 7 cut(s) 164, 541, 646, 868, 1188, 1303, 1571
TaiI ACGT 3 cut(s) 105, 273, 411
TaqI TCGA 6 cut(s) 84, 99, 153, 1174, 1465, 1537
TasI AATT 7 cut(s) 252, 674, 798, 1081, 1102, 1216, 1611
TatI WGTACW 1 cut(s) 981
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 1354
Tru1I TTAA 4 cut(s) 620, 677, 791, 1645
Tru9I TTAA 4 cut(s) 620, 677, 791, 1645
TscAI CASTG 5 cut(s) 614, 649, 791, 966, 1329
TseFI GTSAC 1 cut(s) 1297
Tsp45I GTSAC 1 cut(s) 1297
TspDTI ATGAA 8 cut(s) 497, 644, 893, 942, 1074, 1346, 1497, 1573
TspRI CASTG 5 cut(s) 614, 649, 791, 966, 1329
VneI GTGCAC 1 cut(s) 847
VpaK11BI GGWCC 2 cut(s) 88, 1520
VspI ATTAAT 1 cut(s) 677
XapI RAATTY 1 cut(s) 798
XceI RCATGY 1 cut(s) 1170
XspI CTAG 2 cut(s) 366, 759
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.