Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004350.1

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

22435 .. 34447

Gene Structure 12013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004350.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

atggtctcttcagagatagagatagtctcgtcgtcgtcggactcaaaaccccttgaccaaaaccctaccgccgtcgccgtcgaggtccctataatcgacgtcttctctgcttctgcttacggcgatttccccaaactcaggaagttcgtcgaggaagacggtgcctctctctcccagcctgatggccatggctactacgcactccattgggctgctctcaataacttccctgatatcgcccactacataattcagcatggcggggacgtgaatgccaccgagaatatagggcagacagcattgcattgggcagccgtgcagggtgcaatcgcagcggctgatgtgctcttgcagaatggagctagggttgaggctgctgatgtaaatgggtaccgggcagttcacgttgctgctcagtatgggcaaacatctttcttgaaccacatcgttgcaaagtatcatgctgattttgatgcacctgataatgagggcaggagtcctcttcattgggctgcatataagggatttgcagatacagttaggttgcttctgtttagagatgcaagccaagggaggcaagataaagaaggttgtacccctttgcactgggctgctttaaaaggaaatgtggaggcttgcacagtgcttgttcatgcaggcacaaagcaggaattaatggtgaaagacaatgctggtttcacacctgttcagattgcatctgataaaggtcatcagcgtgtcgctcttttcctctctagccagcagcgggctcaaggaaaccactggttaaagagaatttgtggtgggaagattgcacattttggttttgctcctatcttgttgtgcacaataatcagtcaaacagttctctttatgaactcagttctcgcagctcctaatctgacaaaggttactgctgctgttggtttctggggatgggcagctatttcatttgcagtgggttcgctcattatgttgtacaggtgcagtagtgaagatcctggctacatcaaaagagcaggggacttgggcagtcatatagatacagaggatcctctgttgaatattgatttgaacaattcatctgtatggatgggaaattggtctcaactttgtcctacttgcaagataatcagaccagttcgctccaaacactgccccacatgtaatcgatgtgtagaacagtttgaccatcattgtccctggatatctaattgtgttggcaagagaaacaagcgagatttctttattttgatctgcatgggaacattgacatcaaccatttctgctgctgtcacagttcaaaggatttggactgcagtgccagcatggcaaacagaggaaatatggattcatcatgtgatagttcaatatccaagtcttgttgcatttctgtgtattgacattattattatgatttctactacgactctgacaacggcacaagcatctcaggtaacagacacaatcctttatgtcctttggcttaagcttactacagcaatattcttgcacctcacccaaaacaaaaagtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

512

Amino Acids

56.3

Weight (kDa)

6.59

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	2 cut(s)	161, 390
AciI	CCGC	4 cut(s)	69, 261, 335, 766
AclWI	GGATC	3 cut(s)	992, 1046, 1059
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	4 cut(s)	392, 595, 980, 1535
AfiI	CCNNNNNNNGG	2 cut(s)	138, 766
AflII	CTTAAG	1 cut(s)	1487
AflIII	ACRYGT	1 cut(s)	1163
AgsI	TTSAA	5 cut(s)	439, 1063, 1075, 1304, 1370
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	1000, 1202
AluBI	AGCT	4 cut(s)	362, 893, 944, 1492
AluI	AGCT	4 cut(s)	362, 893, 944, 1492
Alw21I	GWGCWC	2 cut(s)	348, 848
Alw26I	GTCTC	3 cut(s)	10, 31, 1110
Alw44I	GTGCAC	1 cut(s)	844
AlwI	GGATC	3 cut(s)	992, 1046, 1059
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	184
ApaLI	GTGCAC	1 cut(s)	844
ApoI	RAATTY	1 cut(s)	795
AseI	ATTAAT	1 cut(s)	674
Asp718I	GGTACC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	691, 1510
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	848
BalI	TGGCCA	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	1051
BanI	GGYRCC	2 cut(s)	161, 390
BanII	GRGCYC	1 cut(s)	772
BbsI	GAAGAC	2 cut(s)	94, 162
Bbv12I	GWGCWC	2 cut(s)	348, 848
BccI	CCATC	4 cut(s)	176, 930, 1087, 1200
BceAI	ACGGC	5 cut(s)	56, 62, 136, 299, 1455
BcgI	CGANNNNNNTGC	2 cut(s)	945, 979
BciT130I	CCWGG	2 cut(s)	1002, 1204
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	10, 31, 1110
BfaI	CTAG	2 cut(s)	363, 756
BfmI	CTRYAG	2 cut(s)	1317, 1497
BfrI	CTTAAG	1 cut(s)	1487
BglI	GCCNNNNNGGC	1 cut(s)	1330
BmcAI	AGTACT	1 cut(s)	1535
Bme1390I	CCNGG	3 cut(s)	395, 1002, 1204
Bme18I	GGWCC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	4 cut(s)	87, 163, 392, 1053
BmrFI	CCNGG	3 cut(s)	395, 1002, 1204
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	4 cut(s)	463, 550, 725, 1457
BmuI	ACTGGG	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	94, 162
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuEI	CTTGAG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	1171
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	2 cut(s)	10, 1110
BsaJI	CCNNGG	3 cut(s)	187, 568, 1202
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 766
Bse1I	ACTGG	3 cut(s)	611, 788, 1139
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	1002, 1204
BseCI	ATCGAT	1 cut(s)	1171
BseDI	CCNNGG	3 cut(s)	187, 568, 1202
BseGI	GGATG	2 cut(s)	941, 1098
BseLI	CCNNNNNNNGG	2 cut(s)	138, 766
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	4 cut(s)	151, 428, 894, 1466
BseNI	ACTGG	3 cut(s)	611, 788, 1139
BseSI	GKGCMC	1 cut(s)	848
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	2 cut(s)	338, 1006
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	2 cut(s)	161, 390
BshVI	ATCGAT	1 cut(s)	1171
BsiHKAI	GWGCWC	2 cut(s)	348, 848
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	4 cut(s)	71, 278, 1037, 1185
BslI	CCNNNNNNNGG	2 cut(s)	138, 766
BsmAI	GTCTC	3 cut(s)	10, 31, 1110
BsmFI	GGGAC	4 cut(s)	71, 278, 1037, 1185
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	2 cut(s)	10, 1110
Bsp1286I	GDGCHC	3 cut(s)	348, 772, 848
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	3 cut(s)	997, 1051, 1254
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	4 cut(s)	69, 261, 335, 766
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	4 cut(s)	150, 427, 893, 1465
BspDI	ATCGAT	1 cut(s)	1171
BspLI	GGNNCC	4 cut(s)	87, 163, 392, 1053
BspMAI	CTGCAG	1 cut(s)	1321
BspPI	GGATC	3 cut(s)	992, 1046, 1059
BspT107I	GGYRCC	2 cut(s)	161, 390
BspTI	CTTAAG	1 cut(s)	1487
BspTNI	GGTCTC	2 cut(s)	10, 1110
BsrDI	GCAATG	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	3 cut(s)	611, 788, 1139
BssECI	CCNNGG	3 cut(s)	187, 568, 1202
BssMI	GATC	3 cut(s)	997, 1051, 1254
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	2 cut(s)	187, 568
Bst2UI	CCWGG	2 cut(s)	1002, 1204
Bst4CI	ACNGT	6 cut(s)	161, 538, 643, 865, 1185, 1300
Bst6I	CTCTTC	2 cut(s)	13, 507
BstACI	GRCGYC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	1487
BstAUI	TGTACA	1 cut(s)	978
BstC8I	GCNNGC	6 cut(s)	565, 637, 658, 761, 768, 1326
BstDEI	CTNAG	4 cut(s)	137, 414, 880, 1452
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	941, 1098
BstKTI	GATC	3 cut(s)	1000, 1054, 1257
BstMAI	GTCTC	3 cut(s)	10, 31, 1110
BstMBI	GATC	3 cut(s)	997, 1051, 1254
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 1325, 1330
BstNI	CCWGG	2 cut(s)	1002, 1204
BstNSI	RCATGY	1 cut(s)	1167
BstSCI	CCNGG	3 cut(s)	393, 1000, 1202
BstSFI	CTRYAG	2 cut(s)	1317, 1497
BstSLI	GKGCMC	1 cut(s)	848
BstV2I	GAAGAC	2 cut(s)	94, 162
BstX2I	RGATCY	2 cut(s)	997, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	2 cut(s)	997, 1051
Bsu15I	ATCGAT	1 cut(s)	1171
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	1171
BtgI	CCRYGG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	941, 1098
BtsI	GCAGTG	3 cut(s)	963, 1153, 1326
BtsIMutI	CAGTG	6 cut(s)	604, 648, 781, 963, 1153, 1326
Cac8I	GCNNGC	6 cut(s)	565, 637, 658, 761, 768, 1326
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	1171
Csp6I	GTAC	4 cut(s)	391, 594, 979, 1534
CviAII	CATG	8 cut(s)	188, 257, 461, 653, 1164, 1261, 1329, 1358
CviQI	GTAC	4 cut(s)	391, 594, 979, 1534
DdeI	CTNAG	4 cut(s)	137, 414, 880, 1452
DpnI	GATC	3 cut(s)	999, 1053, 1256
DpnII	GATC	3 cut(s)	997, 1051, 1254
DraI	TTTAAA	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	13, 507
EarI	CTCTTC	2 cut(s)	13, 507
Eco130I	CCWWGG	2 cut(s)	187, 568
Eco24I	GRGCYC	1 cut(s)	772
Eco31I	GGTCTC	2 cut(s)	10, 1110
Eco32I	GATATC	2 cut(s)	235, 1209
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	1000, 1202
EcoRV	GATATC	2 cut(s)	235, 1209
EcoT14I	CCWWGG	2 cut(s)	187, 568
EcoT38I	GRGCYC	1 cut(s)	772
ErhI	CCWWGG	2 cut(s)	187, 568
FaeI	CATG	8 cut(s)	191, 260, 464, 656, 1167, 1264, 1332, 1361
FaqI	GGGAC	4 cut(s)	71, 278, 1037, 1185
FatI	CATG	8 cut(s)	187, 256, 460, 652, 1163, 1260, 1328, 1357
FauI	CCCGC	2 cut(s)	254, 759
FokI	GGATG	2 cut(s)	948, 1105
FriOI	GRGCYC	1 cut(s)	772
FspBI	CTAG	2 cut(s)	363, 756
GsaI	CCCAGC	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	8 cut(s)	191, 260, 464, 656, 1167, 1264, 1332, 1361
HindIII	AAGCTT	1 cut(s)	1490
HinfI	GANTC	4 cut(s)	41, 496, 1351, 1429
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	691, 1510
Hpy166II	GTNNAC	2 cut(s)	403, 846
Hpy188I	TCNGA	7 cut(s)	13, 40, 711, 721, 903, 1136, 1434
Hpy188III	TCNNGA	2 cut(s)	139, 436
Hpy8I	GTNNAC	2 cut(s)	403, 846
Hpy99I	CGWCG	7 cut(s)	34, 37, 40, 77, 83, 101, 152
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	6 cut(s)	161, 538, 643, 865, 1185, 1300
HpyCH4IV	ACGT	3 cut(s)	99, 267, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 1325, 1330
HpyF3I	CTNAG	4 cut(s)	137, 414, 880, 1452
HpySE526I	ACGT	3 cut(s)	99, 267, 405
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	8 cut(s)	191, 260, 464, 656, 1167, 1264, 1332, 1361
KpnI	GGTACC	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	997, 1051, 1254
LmnI	GCTCC	4 cut(s)	359, 835, 898, 1151
LweI	GCATC	4 cut(s)	463, 550, 725, 1457
MaeI	CTAG	2 cut(s)	363, 756
MaeII	ACGT	3 cut(s)	99, 267, 405
MaeIII	GTNAC	3 cut(s)	910, 1294, 1456
MalI	GATC	3 cut(s)	999, 1053, 1256
MboI	GATC	3 cut(s)	997, 1051, 1254
MboII	GAAGA	5 cut(s)	94, 167, 494, 820, 1007
MflI	RGATCY	2 cut(s)	997, 1051
MhlI	GDGCHC	3 cut(s)	348, 772, 848
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	6 cut(s)	249, 671, 795, 1078, 1099, 1213
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	3 cut(s)	35, 505, 1423
MmeI	TCCRAC	1 cut(s)	18
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	4 cut(s)	617, 674, 788, 1488
MslI	CAYNNNNRTG	3 cut(s)	735, 1087, 1393
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	335, 766
MspCI	CTTAAG	1 cut(s)	1487
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	3 cut(s)	395, 1002, 1204
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	1002, 1204
MwoI	GCNNNNNNNGC	3 cut(s)	332, 1325, 1330
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	997, 1051, 1254
NlaIII	CATG	8 cut(s)	191, 260, 464, 656, 1167, 1264, 1332, 1361
NlaIV	GGNNCC	4 cut(s)	87, 163, 392, 1053
NmuCI	GTSAC	1 cut(s)	1294
NspI	RCATGY	1 cut(s)	1167
PciI	ACATGT	1 cut(s)	1163
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	1351
PleI	GAGTC	3 cut(s)	35, 504, 1423
PpsI	GAGTC	3 cut(s)	35, 504, 1423
PpuMI	RGGWCCY	1 cut(s)	85
PscI	ACATGT	1 cut(s)	1163
PshBI	ATTAAT	1 cut(s)	674
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	1000, 1202
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	1000, 1202
PspN4I	GGNNCC	4 cut(s)	87, 163, 392, 1053
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	1321
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	997, 1051
RsaI	GTAC	4 cut(s)	392, 595, 980, 1535
RsaNI	GTAC	4 cut(s)	391, 594, 979, 1534
RseI	CAYNNNNRTG	3 cut(s)	735, 1087, 1393
SaqAI	TTAA	4 cut(s)	617, 674, 788, 1488
Sau3AI	GATC	3 cut(s)	997, 1051, 1254
Sau96I	GGNCC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	1535
SchI	GAGTC	3 cut(s)	35, 505, 1423
ScrFI	CCNGG	3 cut(s)	395, 1002, 1204
SduI	GDGCHC	3 cut(s)	348, 772, 848
SfaNI	GCATC	4 cut(s)	463, 550, 725, 1457
SfcI	CTRYAG	2 cut(s)	1317, 1497
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	3 cut(s)	735, 1087, 1393
SmlI	CTYRAG	2 cut(s)	771, 1487
SmoI	CTYRAG	2 cut(s)	771, 1487
Sse9I	AATT	6 cut(s)	249, 671, 795, 1078, 1099, 1213
SsiI	CCGC	4 cut(s)	69, 261, 335, 766
SspI	AATATT	2 cut(s)	1066, 1506
SspMI	CTAG	2 cut(s)	363, 756
StyD4I	CCNGG	3 cut(s)	393, 1000, 1202
StyI	CCWWGG	2 cut(s)	187, 568
TaaI	ACNGT	6 cut(s)	161, 538, 643, 865, 1185, 1300
TaiI	ACGT	3 cut(s)	102, 270, 408
TaqI	TCGA	4 cut(s)	81, 96, 150, 1171
TasI	AATT	6 cut(s)	249, 671, 795, 1078, 1099, 1213
TatI	WGTACW	2 cut(s)	978, 1533
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	1351
Tru1I	TTAA	4 cut(s)	617, 674, 788, 1488
Tru9I	TTAA	4 cut(s)	617, 674, 788, 1488
TscAI	CASTG	6 cut(s)	611, 648, 788, 963, 1160, 1326
TseFI	GTSAC	1 cut(s)	1294
Tsp45I	GTSAC	1 cut(s)	1294
TspDTI	ATGAA	6 cut(s)	494, 641, 890, 939, 1071, 1343
TspRI	CASTG	6 cut(s)	611, 648, 788, 963, 1160, 1326
Vha464I	CTTAAG	1 cut(s)	1487
VneI	GTGCAC	1 cut(s)	844
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	674
XapI	RAATTY	1 cut(s)	795
XceI	RCATGY	1 cut(s)	1167
XspI	CTAG	2 cut(s)	363, 756
ZraI	GACGTC	1 cut(s)	100
ZrmI	AGTACT	1 cut(s)	1535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.