Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

60245331 .. 60266311

Gene Structure 20981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGACTTGTCCTCACTCTCCACTGCACCAAAAAACGTTGCAGCAGATGTGGCAAAACTGTTCTACGAGATCGACGTAATCCGATCGAAGCTTCAGGAAATGAGGCAACCTCGAGAAGCACCTGATGTCCATGGCTACTACGCACTCCATTGGGCTGATCTCGCCCACTACATAATTCAGCATGGCGGGGACGTGAATGCCACCGAGAATATAGGGCAGACAGCATTGCATTGGGCAGCCGTGCAGGGTGCAATCGCAGCGGCTGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCTGCTGATGTAAATGGGTACCGGGCAGTTCACGTTACTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTGCAAAGTATCATGCTGATTTTGATGGACCTGACAATGAGGGTAGGAGTCCTCTTCATTGGGCTGCCTATAAGGGATTTGCGGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAGAGGAAACGTGGAGGCTTGCACTGTACTTGTTTATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTTTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTTGCTCTTTTCCTTTCCAGCCAGCAGTGGGCTCAAGGAAACCAATGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTTTTCTGCACAATAATCATTCATACAGTTCTCTTTATGAACTCAGTTCTTGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTATTGGTTTCTGGGGATGGGCAGCTACTTCATTTGCAGTGGGTTCGCTCATTATGTTCTACAGGTGCAGTAGTCAAGATCCTGGCTACATCAAAAGAGGTATGCTTCTGTTCTCTGATCCTCTGTTAAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGTCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGCCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCAAGATTTCTTTATTTTCATCTGCATGGGAACATTGACATCAAGCATTTCTGCTGCTGTTACAGTTCAAAGGATTTGGACTGCTGTGCCAACATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAATTATTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTATGACACAGTGGCACAAGCATCTCAGGTACCAGTTCATGTCTTCTAAGCAGACAGCTCGTAATATCACAACTAATGAACTGGCAAATGCTATTCGTTATAGTTATCTTCGTTGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACCGTGCAGATTTTTTCATTCAGGGCTATACAGAGGAAGATGAAATTGCTTGGCCTCCATTGCAGCAGGATGCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

524

Amino Acids

59.04

Weight (kDa)

8.4

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	44 - 101	1.3e-06	Ankyrin repeats (3 copies)
Ank_2	PF12796	103 - 168	6.6e-08	Ankyrin repeats (3 copies)
Ank_2	PF12796	166 - 227	2.3e-08	Ankyrin repeats (3 copies)
DHHC	PF01529	340 - 473	3.3e-30	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	315, 1362
AccB1I	GGYRCC	3 cut(s)	315, 1362, 1485
AciI	CCGC	4 cut(s)	186, 260, 455, 1459
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	2 cut(s)	917, 956
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	4 cut(s)	317, 520, 570, 1364
AfiI	CCNNNNNNNGG	1 cut(s)	691
AflIII	ACRYGT	1 cut(s)	1073
AgsI	TTSAA	4 cut(s)	364, 985, 1214, 1280
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	925, 1112
AluBI	AGCT	5 cut(s)	91, 287, 818, 869, 1391
AluI	AGCT	5 cut(s)	91, 287, 818, 869, 1391
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	1020
AlwI	GGATC	2 cut(s)	917, 956
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	1547
ApoI	RAATTY	1 cut(s)	720
AseI	ATTAAT	1 cut(s)	599
Asp718I	GGTACC	2 cut(s)	315, 1362
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	616
AsuII	TTCGAA	1 cut(s)	1465
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	401
BanI	GGYRCC	3 cut(s)	315, 1362, 1485
BanII	GRGCYC	1 cut(s)	697
BbsI	GAAGAC	1 cut(s)	1368
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	5 cut(s)	392, 855, 997, 1110, 1448
BceAI	ACGGC	2 cut(s)	224, 1473
BcgI	CGANNNNNNTGC	4 cut(s)	870, 904, 1373, 1407
BciT130I	CCWGG	2 cut(s)	927, 1114
BciVI	GTATCC	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	1020
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	904
BfuI	GTATCC	1 cut(s)	451
BglI	GCCNNNNNGGC	1 cut(s)	1240
Bme1390I	CCNGG	3 cut(s)	320, 927, 1114
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	317, 1364, 1487
BmrFI	CCNGG	3 cut(s)	320, 927, 1114
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	4 cut(s)	475, 650, 1363, 1555
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	1368
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
Bpu14I	TTCGAA	1 cut(s)	1465
BpuEI	CTTGAG	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	1081
BsaI	GGTCTC	1 cut(s)	1020
BsaJI	CCNNGG	3 cut(s)	130, 493, 1112
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	4 cut(s)	536, 1366, 1419, 1569
Bse3DI	GCAATG	3 cut(s)	224, 1105, 1553
BseBI	CCWGG	2 cut(s)	927, 1114
BseCI	ATCGAT	1 cut(s)	1081
BseDI	CCNNGG	3 cut(s)	130, 493, 1112
BseGI	GGATG	3 cut(s)	866, 1008, 1570
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMI	GCAATG	3 cut(s)	224, 1105, 1553
BseMII	CTCAG	3 cut(s)	353, 819, 1372
BseNI	ACTGG	4 cut(s)	536, 1366, 1419, 1569
BsgI	GTGCAG	5 cut(s)	9, 263, 754, 931, 1521
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	1549
BshNI	GGYRCC	3 cut(s)	315, 1362, 1485
BshVI	ATCGAT	1 cut(s)	1081
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	2 cut(s)	203, 1053
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	1 cut(s)	1020
BsmFI	GGGAC	2 cut(s)	203, 1053
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	1549
Bso31I	GGTCTC	1 cut(s)	1020
BsoBI	CYCGRG	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	1465
Bsp1286I	GDGCHC	2 cut(s)	273, 697
Bsp143I	GATC	5 cut(s)	69, 83, 157, 922, 961
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	4 cut(s)	186, 260, 455, 1459
BspANI	GGCC	1 cut(s)	1549
BspCNI	CTCAG	3 cut(s)	352, 818, 1371
BspDI	ATCGAT	1 cut(s)	1081
BspLI	GGNNCC	3 cut(s)	317, 1364, 1487
BspPI	GGATC	2 cut(s)	917, 956
BspT104I	TTCGAA	1 cut(s)	1465
BspT107I	GGYRCC	3 cut(s)	315, 1362, 1485
BspTNI	GGTCTC	1 cut(s)	1020
BsrDI	GCAATG	3 cut(s)	224, 1105, 1553
BsrI	ACTGG	4 cut(s)	536, 1366, 1419, 1569
BssECI	CCNNGG	3 cut(s)	130, 493, 1112
BssMI	GATC	5 cut(s)	69, 83, 157, 922, 961
BssT1I	CCWWGG	2 cut(s)	130, 493
Bst2UI	CCWGG	2 cut(s)	927, 1114
Bst4CI	ACNGT	9 cut(s)	60, 463, 568, 790, 1067, 1095, 1210, 1344, 1499
Bst6I	CTCTTC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	1465
BstC8I	GCNNGC	4 cut(s)	490, 562, 583, 686
BstDEI	CTNAG	4 cut(s)	339, 805, 1358, 1380
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	3 cut(s)	866, 1008, 1570
BstKTI	GATC	5 cut(s)	72, 86, 160, 925, 964
BstMAI	GTCTC	1 cut(s)	1020
BstMBI	GATC	5 cut(s)	69, 83, 157, 922, 961
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 161, 257, 1240, 1555
BstNI	CCWGG	2 cut(s)	927, 1114
BstNSI	RCATGY	1 cut(s)	1077
BstSCI	CCNGG	3 cut(s)	318, 925, 1112
BstSFI	CTRYAG	1 cut(s)	904
BstV2I	GAAGAC	1 cut(s)	1368
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
Bsu15I	ATCGAT	1 cut(s)	1081
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	1549
BsuTUI	ATCGAT	1 cut(s)	1081
BtgI	CCRYGG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	866, 1008, 1570
BtsI	GCAGTG	3 cut(s)	21, 695, 888
BtsIMutI	CAGTG	7 cut(s)	21, 529, 564, 695, 888, 1063, 1349
Cac8I	GCNNGC	4 cut(s)	490, 562, 583, 686
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	1081
Csp6I	GTAC	4 cut(s)	316, 519, 569, 1363
CviAII	CATG	9 cut(s)	131, 182, 386, 1074, 1171, 1239, 1268, 1372, 1481
CviQI	GTAC	4 cut(s)	316, 519, 569, 1363
DdeI	CTNAG	4 cut(s)	339, 805, 1358, 1380
DpnI	GATC	5 cut(s)	71, 85, 159, 924, 963
DpnII	GATC	5 cut(s)	69, 83, 157, 922, 961
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	130, 493
Eco24I	GRGCYC	1 cut(s)	697
Eco31I	GGTCTC	1 cut(s)	1020
Eco32I	GATATC	1 cut(s)	1119
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	925, 1112
EcoRV	GATATC	1 cut(s)	1119
EcoT14I	CCWWGG	2 cut(s)	130, 493
EcoT38I	GRGCYC	1 cut(s)	697
ErhI	CCWWGG	2 cut(s)	130, 493
FaeI	CATG	9 cut(s)	134, 185, 389, 1077, 1174, 1242, 1271, 1375, 1484
FaqI	GGGAC	2 cut(s)	203, 1053
FatI	CATG	9 cut(s)	130, 181, 385, 1073, 1170, 1238, 1267, 1371, 1480
FauI	CCCGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	873, 1015
FriOI	GRGCYC	1 cut(s)	697
FspBI	CTAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	1549
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	9 cut(s)	134, 185, 389, 1077, 1174, 1242, 1271, 1375, 1484
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	421, 1261
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	6 cut(s)	83, 636, 646, 828, 961, 1046
Hpy188III	TCNNGA	5 cut(s)	95, 113, 361, 920, 1451
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	9 cut(s)	60, 463, 568, 790, 1067, 1095, 1210, 1344, 1499
HpyCH4IV	ACGT	5 cut(s)	36, 75, 192, 330, 552
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 161, 257, 1240, 1555
HpyF3I	CTNAG	4 cut(s)	339, 805, 1358, 1380
HpySE526I	ACGT	5 cut(s)	36, 75, 192, 330, 552
Hsp92II	CATG	9 cut(s)	134, 185, 389, 1077, 1174, 1242, 1271, 1375, 1484
KpnI	GGTACC	2 cut(s)	319, 1366
Kzo9I	GATC	5 cut(s)	69, 83, 157, 922, 961
LmnI	GCTCC	4 cut(s)	284, 760, 823, 1061
LweI	GCATC	4 cut(s)	475, 650, 1363, 1555
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	5 cut(s)	36, 75, 192, 330, 552
MaeIII	GTNAC	3 cut(s)	331, 835, 1204
MalI	GATC	5 cut(s)	71, 85, 159, 924, 963
MboI	GATC	5 cut(s)	69, 83, 157, 922, 961
MboII	GAAGA	6 cut(s)	419, 745, 1262, 1368, 1433, 1544
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	2 cut(s)	273, 697
MluCI	AATT	8 cut(s)	174, 596, 720, 988, 1009, 1123, 1287, 1539
MlyI	GAGTC	1 cut(s)	430
MseI	TTAA	5 cut(s)	542, 599, 713, 971, 1573
MslI	CAYNNNNRTG	4 cut(s)	660, 997, 1169, 1303
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	3 cut(s)	320, 927, 1114
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	927, 1114
MwoI	GCNNNNNNNGC	5 cut(s)	50, 161, 257, 1240, 1555
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	5 cut(s)	69, 83, 157, 922, 961
NlaIII	CATG	9 cut(s)	134, 185, 389, 1077, 1174, 1242, 1271, 1375, 1484
NlaIV	GGNNCC	3 cut(s)	317, 1364, 1487
NspI	RCATGY	1 cut(s)	1077
NspV	TTCGAA	1 cut(s)	1465
PaeR7I	CTCGAG	1 cut(s)	111
PciI	ACATGT	1 cut(s)	1073
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	1261
Ple19I	CGATCG	1 cut(s)	86
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PscI	ACATGT	1 cut(s)	1073
PshBI	ATTAAT	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	925, 1112
PspGI	CCWGG	2 cut(s)	925, 1112
PspN4I	GGNNCC	3 cut(s)	317, 1364, 1487
PspPI	GGNCC	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	922
PvuI	CGATCG	1 cut(s)	86
RsaI	GTAC	4 cut(s)	317, 520, 570, 1364
RsaNI	GTAC	4 cut(s)	316, 519, 569, 1363
RseI	CAYNNNNRTG	4 cut(s)	660, 997, 1169, 1303
SaqAI	TTAA	5 cut(s)	542, 599, 713, 971, 1573
Sau3AI	GATC	5 cut(s)	69, 83, 157, 922, 961
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	320, 927, 1114
SduI	GDGCHC	2 cut(s)	273, 697
SfaNI	GCATC	4 cut(s)	475, 650, 1363, 1555
SfcI	CTRYAG	1 cut(s)	904
Sfr274I	CTCGAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	1465
SinI	GGWCC	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	4 cut(s)	660, 997, 1169, 1303
SmlI	CTYRAG	2 cut(s)	111, 696
SmoI	CTYRAG	2 cut(s)	111, 696
Sse9I	AATT	8 cut(s)	174, 596, 720, 988, 1009, 1123, 1287, 1539
SsiI	CCGC	4 cut(s)	186, 260, 455, 1459
SspI	AATATT	1 cut(s)	976
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	318, 925, 1112
StyI	CCWWGG	2 cut(s)	130, 493
TaaI	ACNGT	9 cut(s)	60, 463, 568, 790, 1067, 1095, 1210, 1344, 1499
TaiI	ACGT	5 cut(s)	39, 78, 195, 333, 555
TaqI	TCGA	5 cut(s)	72, 86, 112, 1081, 1465
TasI	AATT	8 cut(s)	174, 596, 720, 988, 1009, 1123, 1287, 1539
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	1261
Tru1I	TTAA	5 cut(s)	542, 599, 713, 971, 1573
Tru9I	TTAA	5 cut(s)	542, 599, 713, 971, 1573
TscAI	CASTG	7 cut(s)	28, 536, 571, 695, 888, 1070, 1349
TspRI	CASTG	7 cut(s)	28, 536, 571, 695, 888, 1070, 1349
VpaK11BI	GGWCC	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	1 cut(s)	720
XceI	RCATGY	1 cut(s)	1077
XhoI	CTCGAG	1 cut(s)	111
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.