Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Reverse (-)

26297454 .. 26309798

Gene Structure 12345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGCCGGTCCTGATATGGCCGGTCCCTCAGACACACACCATGACTCTGGTCCAACCCCGGATGCAAGAAAATTCTATGAGCTATTTAGAGATGCTGACATTGATTTTGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATGTGGAGGCTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTCTCTAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTGTTGTGCACAATAATCAGTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTGTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTGAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGCCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCGAGATTTCTTTATTTTGATCTGCATGGGAACATTGACATCAACCATTTCTGCTGCTGTCACAGTTCAAAGGATTTGGACTGCAGTGCCAGCATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAAGTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTACGACTCTGACAACGGCACAAGCATCTCAGATAGCTCGAAATATCACAACTAATGAACTGGCAAATGCTATTCGTTATGGGTATCTCCGTGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACTGTGCAGATTTTTTCATTCAGGGCTATACAGACGATGATGAAATTGCCTGGCCTCCATTGCAGCAGGTTGCCAGTTAAAATATGCAGACTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

457

Amino Acids

50.76

Weight (kDa)

8.65

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	39 - 126	3.8e-17	Ankyrin repeats (3 copies)
Ank_4	PF13637	39 - 88	9e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	95 - 157	1.1e-08	Ankyrin repeats (3 copies)
DHHC	PF01529	274 - 401	2.8e-33	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1332
AccB1I	GGYRCC	1 cut(s)	1265
AciI	CCGC	2 cut(s)	478, 1239
AclWI	GGATC	3 cut(s)	704, 758, 771
AcoI	YGGCCR	2 cut(s)	3, 18
AcsI	RAATTY	2 cut(s)	71, 507
AfaI	GTAC	2 cut(s)	307, 692
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	875
AgsI	TTSAA	5 cut(s)	151, 775, 787, 1016, 1082
AjnI	CCWGG	3 cut(s)	712, 914, 1324
AluBI	AGCT	4 cut(s)	82, 605, 656, 1172
AluI	AGCT	4 cut(s)	82, 605, 656, 1172
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	822
Alw44I	GTGCAC	1 cut(s)	556
AlwI	GGATC	3 cut(s)	704, 758, 771
AoxI	GGCC	3 cut(s)	3, 18, 1327
ApaLI	GTGCAC	1 cut(s)	556
ApeKI	GCWGC	9 cut(s)	122, 224, 323, 475, 602, 629, 653, 1001, 1338
ApoI	RAATTY	2 cut(s)	71, 507
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AseI	ATTAAT	1 cut(s)	386
AspS9I	GGNCC	3 cut(s)	8, 23, 50
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	403
AsuII	TTCGAA	1 cut(s)	1245
AvaII	GGWCC	3 cut(s)	8, 23, 50
BaeGI	GKGCMC	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	763
BanI	GGYRCC	1 cut(s)	1265
BanII	GRGCYC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	9 cut(s)	109, 211, 310, 487, 614, 616, 665, 988, 1350
BccI	CCATC	4 cut(s)	642, 799, 912, 1228
BceAI	ACGGC	2 cut(s)	1167, 1253
BcgI	CGANNNNNNTGC	2 cut(s)	657, 691
BciT130I	CCWGG	3 cut(s)	714, 916, 1326
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	1029
BfuAI	ACCTGC	1 cut(s)	1332
BglI	GCCNNNNNGGC	1 cut(s)	1042
BisI	GCNGC	9 cut(s)	123, 225, 324, 476, 603, 630, 654, 1002, 1339
BlsI	GCNGC	9 cut(s)	124, 226, 325, 477, 604, 631, 655, 1003, 1340
Bme1390I	CCNGG	4 cut(s)	59, 714, 916, 1326
Bme18I	GGWCC	3 cut(s)	8, 23, 50
BmgT120I	GGNCC	3 cut(s)	8, 23, 50
BmiI	GGNNCC	3 cut(s)	25, 765, 1267
BmrFI	CCNGG	4 cut(s)	59, 714, 916, 1326
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	6 cut(s)	52, 82, 175, 262, 437, 1169
BmuI	ACTGGG	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	1245
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	883
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	3 cut(s)	57, 280, 914
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse118I	RCCGGY	2 cut(s)	5, 20
Bse1I	ACTGG	4 cut(s)	323, 500, 1200, 1349
Bse3DI	GCAATG	1 cut(s)	1333
BseBI	CCWGG	3 cut(s)	714, 916, 1326
BseCI	ATCGAT	1 cut(s)	883
BseDI	CCNNGG	3 cut(s)	57, 280, 914
BseGI	GGATG	3 cut(s)	67, 653, 810
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	1333
BseMII	CTCAG	4 cut(s)	42, 140, 606, 1178
BseNI	ACTGG	4 cut(s)	323, 500, 1200, 1349
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	9 cut(s)	109, 211, 310, 487, 614, 616, 665, 988, 1350
BsgI	GTGCAG	2 cut(s)	718, 1301
BshFI	GGCC	3 cut(s)	5, 20, 1329
BshNI	GGYRCC	1 cut(s)	1265
BshVI	ATCGAT	1 cut(s)	883
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	6, 21, 59
BslFI	GGGAC	3 cut(s)	9, 749, 897
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	3 cut(s)	9, 749, 897
BsnI	GGCC	3 cut(s)	5, 20, 1329
Bso31I	GGTCTC	1 cut(s)	822
Bsp119I	TTCGAA	1 cut(s)	1245
Bsp1286I	GDGCHC	2 cut(s)	484, 560
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	3 cut(s)	709, 763, 966
BspACI	CCGC	2 cut(s)	478, 1239
BspANI	GGCC	3 cut(s)	5, 20, 1329
BspCNI	CTCAG	4 cut(s)	41, 139, 605, 1177
BspDI	ATCGAT	1 cut(s)	883
BspLI	GGNNCC	3 cut(s)	25, 765, 1267
BspMAI	CTGCAG	1 cut(s)	1033
BspMI	ACCTGC	1 cut(s)	1332
BspPI	GGATC	3 cut(s)	704, 758, 771
BspT104I	TTCGAA	1 cut(s)	1245
BspT107I	GGYRCC	1 cut(s)	1265
BspTNI	GGTCTC	1 cut(s)	822
BsrDI	GCAATG	1 cut(s)	1333
BsrFI	RCCGGY	2 cut(s)	5, 20
BsrGI	TGTACA	1 cut(s)	690
BsrI	ACTGG	4 cut(s)	323, 500, 1200, 1349
BssAI	RCCGGY	2 cut(s)	5, 20
BssECI	CCNNGG	3 cut(s)	57, 280, 914
BssMI	GATC	3 cut(s)	709, 763, 966
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	714, 916, 1326
Bst4CI	ACNGT	6 cut(s)	250, 355, 577, 897, 1012, 1279
Bst6I	CTCTTC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	690
BstBI	TTCGAA	1 cut(s)	1245
BstC8I	GCNNGC	6 cut(s)	277, 349, 370, 473, 480, 1038
BstDEI	CTNAG	4 cut(s)	28, 126, 592, 1164
BstF5I	GGATG	3 cut(s)	67, 653, 810
BstKTI	GATC	3 cut(s)	712, 766, 969
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	3 cut(s)	709, 763, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	1037, 1042, 1335
BstNI	CCWGG	3 cut(s)	714, 916, 1326
BstNSI	RCATGY	1 cut(s)	879
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	4 cut(s)	57, 712, 914, 1324
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	9 cut(s)	109, 211, 310, 487, 614, 616, 665, 988, 1350
BstX2I	RGATCY	2 cut(s)	709, 763
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	2 cut(s)	709, 763
Bsu15I	ATCGAT	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	5, 20, 1329
BsuTUI	ATCGAT	1 cut(s)	883
BtsCI	GGATG	3 cut(s)	67, 653, 810
BtsI	GCAGTG	3 cut(s)	675, 865, 1038
BtsIMutI	CAGTG	6 cut(s)	316, 351, 493, 675, 865, 1038
BveI	ACCTGC	1 cut(s)	1332
Cac8I	GCNNGC	6 cut(s)	277, 349, 370, 473, 480, 1038
Cfr10I	RCCGGY	2 cut(s)	5, 20
Cfr13I	GGNCC	3 cut(s)	8, 23, 50
ClaI	ATCGAT	1 cut(s)	883
Csp6I	GTAC	2 cut(s)	306, 691
CviAII	CATG	8 cut(s)	41, 173, 365, 876, 973, 1041, 1070, 1261
CviQI	GTAC	2 cut(s)	306, 691
DdeI	CTNAG	4 cut(s)	28, 126, 592, 1164
DpnI	GATC	3 cut(s)	711, 765, 968
DpnII	GATC	3 cut(s)	709, 763, 966
DraI	TTTAAA	1 cut(s)	330
EaeI	YGGCCR	2 cut(s)	3, 18
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	822
Eco32I	GATATC	1 cut(s)	921
Eco47I	GGWCC	3 cut(s)	8, 23, 50
EcoRII	CCWGG	3 cut(s)	712, 914, 1324
EcoRV	GATATC	1 cut(s)	921
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	8 cut(s)	44, 176, 368, 879, 976, 1044, 1073, 1264
FaqI	GGGAC	3 cut(s)	9, 749, 897
FatI	CATG	8 cut(s)	40, 172, 364, 875, 972, 1040, 1069, 1260
FauI	CCCGC	1 cut(s)	471
Fnu4HI	GCNGC	9 cut(s)	123, 225, 324, 476, 603, 630, 654, 1002, 1339
FokI	GGATG	3 cut(s)	74, 660, 817
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	9 cut(s)	123, 225, 324, 476, 603, 630, 654, 1002, 1339
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	9 cut(s)	123, 225, 324, 476, 603, 630, 654, 1002, 1339
HaeIII	GGCC	3 cut(s)	5, 20, 1329
HapII	CCGG	3 cut(s)	6, 21, 59
Hin1II	CATG	8 cut(s)	44, 176, 368, 879, 976, 1044, 1073, 1264
HinfI	GANTC	4 cut(s)	44, 208, 1063, 1141
HpaII	CCGG	3 cut(s)	6, 21, 59
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	115, 558
Hpy188I	TCNGA	7 cut(s)	31, 423, 433, 615, 848, 1146, 1167
Hpy188III	TCNNGA	3 cut(s)	11, 148, 1231
Hpy8I	GTNNAC	2 cut(s)	115, 558
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	6 cut(s)	250, 355, 577, 897, 1012, 1279
HpyCH4IV	ACGT	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1037, 1042, 1335
HpyF3I	CTNAG	4 cut(s)	28, 126, 592, 1164
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	8 cut(s)	44, 176, 368, 879, 976, 1044, 1073, 1264
Kzo9I	GATC	3 cut(s)	709, 763, 966
LmnI	GCTCC	3 cut(s)	547, 610, 863
Lsp1109I	GCAGC	9 cut(s)	109, 211, 310, 487, 614, 616, 665, 988, 1350
LweI	GCATC	6 cut(s)	52, 82, 175, 262, 437, 1169
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	622, 1006
MalI	GATC	3 cut(s)	711, 765, 968
MboI	GATC	3 cut(s)	709, 763, 966
MboII	GAAGA	4 cut(s)	206, 532, 719, 1064
MflI	RGATCY	2 cut(s)	709, 763
MhlI	GDGCHC	2 cut(s)	484, 560
MluCI	AATT	7 cut(s)	71, 383, 507, 790, 811, 925, 1319
MlyI	GAGTC	3 cut(s)	38, 217, 1135
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	9 cut(s)	37, 193, 222, 279, 337, 473, 754, 777, 1340
MseI	TTAA	4 cut(s)	329, 386, 500, 1353
MslI	CAYNNNNRTG	3 cut(s)	447, 799, 1105
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	3 cut(s)	6, 21, 59
MspR9I	CCNGG	4 cut(s)	59, 714, 916, 1326
MvaI	CCWGG	3 cut(s)	714, 916, 1326
MwoI	GCNNNNNNNGC	3 cut(s)	1037, 1042, 1335
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	709, 763, 966
NlaIII	CATG	8 cut(s)	44, 176, 368, 879, 976, 1044, 1073, 1264
NlaIV	GGNNCC	3 cut(s)	25, 765, 1267
NmuCI	GTSAC	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	879
NspV	TTCGAA	1 cut(s)	1245
PciI	ACATGT	1 cut(s)	875
PfeI	GAWTC	1 cut(s)	1063
PkrI	GCNGC	9 cut(s)	124, 226, 325, 477, 604, 631, 655, 1003, 1340
PleI	GAGTC	3 cut(s)	38, 216, 1135
PpsI	GAGTC	3 cut(s)	38, 216, 1135
PscI	ACATGT	1 cut(s)	875
PshAI	GACNNNNGTC	1 cut(s)	48
PshBI	ATTAAT	1 cut(s)	386
Psp6I	CCWGG	3 cut(s)	712, 914, 1324
PspGI	CCWGG	3 cut(s)	712, 914, 1324
PspN4I	GGNNCC	3 cut(s)	25, 765, 1267
PspPI	GGNCC	3 cut(s)	8, 23, 50
PstI	CTGCAG	1 cut(s)	1033
PsuI	RGATCY	2 cut(s)	709, 763
RsaI	GTAC	2 cut(s)	307, 692
RsaNI	GTAC	2 cut(s)	306, 691
RseI	CAYNNNNRTG	3 cut(s)	447, 799, 1105
SaqAI	TTAA	4 cut(s)	329, 386, 500, 1353
SatI	GCNGC	9 cut(s)	123, 225, 324, 476, 603, 630, 654, 1002, 1339
Sau3AI	GATC	3 cut(s)	709, 763, 966
Sau96I	GGNCC	3 cut(s)	8, 23, 50
SchI	GAGTC	3 cut(s)	38, 217, 1135
ScrFI	CCNGG	4 cut(s)	59, 714, 916, 1326
SduI	GDGCHC	2 cut(s)	484, 560
SfaNI	GCATC	6 cut(s)	52, 82, 175, 262, 437, 1169
SfcI	CTRYAG	1 cut(s)	1029
SfuI	TTCGAA	1 cut(s)	1245
SinI	GGWCC	3 cut(s)	8, 23, 50
SmiMI	CAYNNNNRTG	3 cut(s)	447, 799, 1105
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	7 cut(s)	71, 383, 507, 790, 811, 925, 1319
SsiI	CCGC	2 cut(s)	478, 1239
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	4 cut(s)	57, 712, 914, 1324
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	6 cut(s)	250, 355, 577, 897, 1012, 1279
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	883, 1174, 1245
TasI	AATT	7 cut(s)	71, 383, 507, 790, 811, 925, 1319
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	1 cut(s)	1063
Tru1I	TTAA	4 cut(s)	329, 386, 500, 1353
Tru9I	TTAA	4 cut(s)	329, 386, 500, 1353
TscAI	CASTG	6 cut(s)	323, 358, 500, 675, 872, 1038
TseFI	GTSAC	1 cut(s)	1006
TseI	GCWGC	9 cut(s)	122, 224, 323, 475, 602, 629, 653, 1001, 1338
Tsp45I	GTSAC	1 cut(s)	1006
TspDTI	ATGAA	9 cut(s)	206, 353, 602, 651, 783, 1055, 1206, 1281, 1331
TspGWI	ACGGA	1 cut(s)	1214
TspRI	CASTG	6 cut(s)	323, 358, 500, 675, 872, 1038
VneI	GTGCAC	1 cut(s)	556
VpaK11BI	GGWCC	3 cut(s)	8, 23, 50
VspI	ATTAAT	1 cut(s)	386
XapI	RAATTY	2 cut(s)	71, 507
XceI	RCATGY	1 cut(s)	879
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.