Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

5070261 .. 5078518

Gene Structure 8258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04330.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGCTTATTCAGAGATAGAGGTGGTGTCTTCGGACTCAAAAACCCAGGAAAACCCTGCCGAGGTTCCCGTGTTCGACGTTTTCTCTGCTTCTGCTTATGGCGATTTTCAGAAACTCAGAAAGTTCGTCGAGCAAGACGGTGCCTCTCTCTCCAAGCCAGACGTCCATGGCTACTACGCCCTCCATTGGGCTGCTCTCAATAACTTCCCCGATATTTCCCACTACATAATTCAGCATGGTGGAGATGTCAATGCGACTGAGAATGTACAGCAGACAGCATTGCATTGGGCAGCCGTGAAGGGTGCAATTGCGGTGGCGGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCAGCTGATGTACATGGCTACCGGGCAGTTCACGTTGCTGCCCAATATGGGCAAACATCTTTTCTGAATCACATTGTTGCAAGATATCATGCTGATTTTGATGCACCTGATAATGAGGGGAGGAGTCCTCTTCATTGGGCCGCATATAAAGGTTTTGCAGATACAGTTAGATTACTTCTGTTTAGAGATGCATGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCAGCCTTAAGTGGGAACGTGGAGGCTTGCACAGTGCTTGTCTATGCTGGCACTAAGCAGGAATTAACGGTGAAAGACAATGCTGGTTTTACTCCCGTTCAGATTGCTTCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTTGCTAACCAGCAGCGGGCTCATAGCAACTACTGGAGAGACAAATTTTGCAGTGGAAAGATGGCGGATATTGGTTATGCACCTGTCTTGTTGTGTATAATAGTCTTTCAGACAGTTCTCTTTATGAATTCAGTCCTTGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTCGGTCTCTGGGGATGGACTGCCATTTCATTAGCAGTGGGTTCCTTGATTATGTTCTACAGGTGCAGCAGTAAAGATCCTGGTTACATCAAAAGAGCAGGGGATTTAAGCAATCCTATAATTACAGAGGATCCTTTGTTGAACGTTGATTTGAACAATTCTGCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCCACTTGCAAGATAATTAGACCTGTTCGCTCTAAACACTGCCCCTCATGTAACCGATGCGTAGAACAGTTTGACCATCACTGTCCATGGATATCTAATTGTGTTGGAAAGAGAAACAAGCGAGATTTCTTTATACTTATCTGCCTGGGAACTTTGACGTCACTCATTTCTACGGCTGTTGCAGTTCAAAGGATTTGGGGTGCATTGCCAGGATTGCGAACAGAGGAATCATGGATTCGTCGTGTGGTAGTTCAGTATCCTAGTATTGTTGCTTTTCTGTTTGTGGACGTAATTATTTTGATTGCTGTTACAACCCTGACAATGGCACAGGCAACTCAGATAGCTCGAAATATCACCACCAACGAATTGGCGAATGCTATTCGTTATGGGTATCTTCGGGGTCCAGATGGGCGGTTCCGAAACCCATATAACCATGGGTGCAGGAAAAATTGTTCTGATTTTCTCATTCAGGGCCACACAGATGATGAAATGGCTTGGCCTCCATTGCAGCAGGTTGCCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

540

Amino Acids

59.69

Weight (kDa)

7.56

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	165, 1256
Acc36I	ACCTGC	1 cut(s)	1597
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	6 cut(s)	311, 317, 492, 745, 794, 1507
AclI	AACGTT	1 cut(s)	1044
AclWI	GGATC	3 cut(s)	971, 1025, 1038
AcsI	RAATTY	2 cut(s)	773, 856
AcyI	GRCGYC	2 cut(s)	162, 1253
AfaI	GTAC	3 cut(s)	267, 363, 574
AfiI	CCNNNNNNNGG	7 cut(s)	61, 186, 187, 399, 600, 745, 1417
AflII	CTTAAG	1 cut(s)	595
AgsI	TTSAA	3 cut(s)	1042, 1054, 1283
AjnI	CCWGG	4 cut(s)	45, 979, 1239, 1303
AloI	GAACNNNNNNTCC	2 cut(s)	1531, 1563
AluBI	AGCT	4 cut(s)	341, 356, 872, 1439
AluI	AGCT	4 cut(s)	341, 356, 872, 1439
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	3 cut(s)	762, 911, 1089
AlwI	GGATC	3 cut(s)	971, 1025, 1038
AoxI	GGCC	3 cut(s)	489, 1567, 1592
ApoI	RAATTY	2 cut(s)	773, 856
AspS9I	GGNCC	3 cut(s)	489, 1496, 1567
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	670, 1441
AvaII	GGWCC	1 cut(s)	1496
BamHI	GGATCC	1 cut(s)	1030
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	5 cut(s)	784, 909, 1066, 1179, 1496
BceAI	ACGGC	2 cut(s)	278, 1284
BciT130I	CCWGG	4 cut(s)	47, 981, 1241, 1305
BciVI	GTATCC	1 cut(s)	1362
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	762, 911, 1089
BfaI	CTAG	2 cut(s)	342, 1356
BfmI	CTRYAG	1 cut(s)	958
BfrI	CTTAAG	1 cut(s)	595
BfuAI	ACCTGC	1 cut(s)	1597
BfuI	GTATCC	1 cut(s)	1362
Bme1390I	CCNGG	5 cut(s)	47, 374, 981, 1241, 1305
Bme18I	GGWCC	1 cut(s)	1496
BmgT120I	GGNCC	3 cut(s)	489, 1496, 1567
BmiI	GGNNCC	6 cut(s)	66, 142, 943, 1032, 1497, 1511
BmrFI	CCNGG	5 cut(s)	47, 374, 981, 1241, 1305
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	3 cut(s)	442, 529, 1142
BmuI	ACTGGG	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	1 cut(s)	784
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	2 cut(s)	162, 1253
BsaI	GGTCTC	2 cut(s)	911, 1089
BsaJI	CCNNGG	7 cut(s)	45, 60, 166, 547, 1181, 1240, 1528
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	7 cut(s)	61, 186, 187, 399, 600, 745, 1417
Bse1I	ACTGG	3 cut(s)	590, 767, 1614
Bse3DI	GCAATG	3 cut(s)	278, 1298, 1598
BseBI	CCWGG	4 cut(s)	47, 981, 1241, 1305
BseDI	CCNNGG	7 cut(s)	45, 60, 166, 547, 1181, 1240, 1528
BseGI	GGATG	3 cut(s)	325, 920, 1077
BseLI	CCNNNNNNNGG	7 cut(s)	61, 186, 187, 399, 600, 745, 1417
BseMI	GCAATG	3 cut(s)	278, 1298, 1598
BseMII	CTCAG	3 cut(s)	130, 249, 1445
BseNI	ACTGG	3 cut(s)	590, 767, 1614
BseRI	GAGGAG	1 cut(s)	487
BsgI	GTGCAG	2 cut(s)	985, 1555
BshFI	GGCC	3 cut(s)	491, 1569, 1594
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	1080
BslI	CCNNNNNNNGG	7 cut(s)	61, 186, 187, 399, 600, 745, 1417
BsmAI	GTCTC	3 cut(s)	762, 911, 1089
BsmFI	GGGAC	1 cut(s)	1080
BsmI	GAATGC	1 cut(s)	1474
BsnI	GGCC	3 cut(s)	491, 1569, 1594
Bso31I	GGTCTC	2 cut(s)	911, 1089
Bsp1286I	GDGCHC	2 cut(s)	327, 751
Bsp1407I	TGTACA	2 cut(s)	265, 361
Bsp143I	GATC	2 cut(s)	976, 1030
Bsp19I	CCATGG	3 cut(s)	166, 1181, 1528
BspACI	CCGC	6 cut(s)	311, 317, 492, 745, 794, 1507
BspANI	GGCC	3 cut(s)	491, 1569, 1594
BspCNI	CTCAG	3 cut(s)	129, 250, 1444
BspLI	GGNNCC	6 cut(s)	66, 142, 943, 1032, 1497, 1511
BspMI	ACCTGC	1 cut(s)	1597
BspPI	GGATC	3 cut(s)	971, 1025, 1038
BspT107I	GGYRCC	1 cut(s)	140
BspTI	CTTAAG	1 cut(s)	595
BspTNI	GGTCTC	2 cut(s)	911, 1089
BsrDI	GCAATG	3 cut(s)	278, 1298, 1598
BsrGI	TGTACA	2 cut(s)	265, 361
BsrI	ACTGG	3 cut(s)	590, 767, 1614
BssECI	CCNNGG	7 cut(s)	45, 60, 166, 547, 1181, 1240, 1528
BssMI	GATC	2 cut(s)	976, 1030
BssNI	GRCGYC	2 cut(s)	162, 1253
BssT1I	CCWWGG	4 cut(s)	166, 547, 1181, 1528
Bst2UI	CCWGG	4 cut(s)	47, 981, 1241, 1305
Bst4CI	ACNGT	7 cut(s)	140, 517, 622, 658, 844, 1164, 1178
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	2 cut(s)	162, 1253
BstAFI	CTTAAG	1 cut(s)	595
BstAUI	TGTACA	2 cut(s)	265, 361
BstC8I	GCNNGC	4 cut(s)	544, 616, 637, 747
BstDEI	CTNAG	4 cut(s)	116, 258, 642, 1431
BstDSI	CCRYGG	3 cut(s)	166, 1181, 1528
BstF5I	GGATG	3 cut(s)	325, 920, 1077
BstKTI	GATC	2 cut(s)	979, 1033
BstMAI	GTCTC	3 cut(s)	762, 911, 1089
BstMBI	GATC	2 cut(s)	976, 1030
BstMWI	GCNNNNNNNGC	2 cut(s)	1309, 1600
BstNI	CCWGG	4 cut(s)	47, 981, 1241, 1305
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	5 cut(s)	45, 372, 979, 1239, 1303
BstSFI	CTRYAG	1 cut(s)	958
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	2 cut(s)	976, 1030
BstXI	CCANNNNNNTGG	1 cut(s)	1462
BstYI	RGATCY	2 cut(s)	976, 1030
BsuI	GTATCC	1 cut(s)	1362
BsuRI	GGCC	3 cut(s)	491, 1569, 1594
BtgI	CCRYGG	3 cut(s)	166, 1181, 1528
BtsCI	GGATG	3 cut(s)	325, 920, 1077
BtsI	GCAGTG	3 cut(s)	787, 942, 1132
BtsIMutI	CAGTG	6 cut(s)	583, 627, 787, 942, 1132, 1174
BveI	ACCTGC	1 cut(s)	1597
Cac8I	GCNNGC	4 cut(s)	544, 616, 637, 747
Cfr13I	GGNCC	3 cut(s)	489, 1496, 1567
Csp6I	GTAC	3 cut(s)	266, 362, 573
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	9 cut(s)	167, 236, 365, 440, 543, 1143, 1182, 1326, 1529
CviQI	GTAC	3 cut(s)	266, 362, 573
DdeI	CTNAG	4 cut(s)	116, 258, 642, 1431
DpnI	GATC	2 cut(s)	978, 1032
DpnII	GATC	2 cut(s)	976, 1030
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	2 cut(s)	332, 809
Eco130I	CCWWGG	4 cut(s)	166, 547, 1181, 1528
Eco24I	GRGCYC	1 cut(s)	751
Eco31I	GGTCTC	2 cut(s)	911, 1089
Eco32I	GATATC	2 cut(s)	437, 1188
Eco47I	GGWCC	1 cut(s)	1496
EcoRI	GAATTC	1 cut(s)	856
EcoRII	CCWGG	4 cut(s)	45, 979, 1239, 1303
EcoRV	GATATC	2 cut(s)	437, 1188
EcoT14I	CCWWGG	4 cut(s)	166, 547, 1181, 1528
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	4 cut(s)	166, 547, 1181, 1528
FaeI	CATG	9 cut(s)	170, 239, 368, 443, 546, 1146, 1185, 1329, 1532
FaqI	GGGAC	1 cut(s)	1080
FatI	CATG	9 cut(s)	166, 235, 364, 439, 542, 1142, 1181, 1325, 1528
FauI	CCCGC	1 cut(s)	738
FokI	GGATG	3 cut(s)	332, 927, 1084
FriOI	GRGCYC	1 cut(s)	751
FspBI	CTAG	2 cut(s)	342, 1356
GsuI	CTGGAG	1 cut(s)	784
HaeIII	GGCC	3 cut(s)	491, 1569, 1594
HapII	CCGG	1 cut(s)	373
Hin1I	GRCGYC	2 cut(s)	162, 1253
Hin1II	CATG	9 cut(s)	170, 239, 368, 443, 546, 1146, 1185, 1329, 1532
HinfI	GANTC	5 cut(s)	35, 418, 475, 1322, 1330
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	2 cut(s)	670, 1441
Hpy166II	GTNNAC	2 cut(s)	382, 1381
Hpy188III	TCNNGA	1 cut(s)	1499
Hpy8I	GTNNAC	2 cut(s)	382, 1381
Hpy99I	CGWCG	3 cut(s)	80, 131, 1338
HpyAV	CCTTC	2 cut(s)	292, 560
HpyCH4III	ACNGT	7 cut(s)	140, 517, 622, 658, 844, 1164, 1178
HpyCH4IV	ACGT	7 cut(s)	78, 162, 384, 606, 1044, 1253, 1383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1309, 1600
HpyF3I	CTNAG	4 cut(s)	116, 258, 642, 1431
HpySE526I	ACGT	7 cut(s)	78, 162, 384, 606, 1044, 1253, 1383
Hsp92I	GRCGYC	2 cut(s)	162, 1253
Hsp92II	CATG	9 cut(s)	170, 239, 368, 443, 546, 1146, 1185, 1329, 1532
Kzo9I	GATC	2 cut(s)	976, 1030
LmnI	GCTCC	2 cut(s)	338, 877
LweI	GCATC	3 cut(s)	442, 529, 1142
MaeI	CTAG	2 cut(s)	342, 1356
MaeII	ACGT	7 cut(s)	78, 162, 384, 606, 1044, 1253, 1383
MaeIII	GTNAC	5 cut(s)	889, 983, 1145, 1254, 1402
MalI	GATC	2 cut(s)	978, 1032
MboI	GATC	2 cut(s)	976, 1030
MboII	GAAGA	3 cut(s)	21, 473, 1481
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	2 cut(s)	976, 1030
MhlI	GDGCHC	2 cut(s)	327, 751
MlyI	GAGTC	2 cut(s)	29, 484
MmeI	TCCRAC	1 cut(s)	1180
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	3 cut(s)	596, 653, 1007
MslI	CAYNNNNRTG	2 cut(s)	714, 1575
MspA1I	CMGCKG	2 cut(s)	356, 745
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	5 cut(s)	47, 374, 981, 1241, 1305
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	1474
MvaI	CCWGG	4 cut(s)	47, 981, 1241, 1305
MwoI	GCNNNNNNNGC	2 cut(s)	1309, 1600
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	3 cut(s)	166, 1181, 1528
NdeII	GATC	2 cut(s)	976, 1030
NlaIII	CATG	9 cut(s)	170, 239, 368, 443, 546, 1146, 1185, 1329, 1532
NlaIV	GGNNCC	6 cut(s)	66, 142, 943, 1032, 1497, 1511
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	1254
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	546
PctI	GAATGC	1 cut(s)	1474
PfeI	GAWTC	3 cut(s)	418, 1322, 1330
PleI	GAGTC	2 cut(s)	29, 483
PpsI	GAGTC	2 cut(s)	29, 483
Psp1406I	AACGTT	1 cut(s)	1044
Psp6I	CCWGG	4 cut(s)	45, 979, 1239, 1303
PspGI	CCWGG	4 cut(s)	45, 979, 1239, 1303
PspN4I	GGNNCC	6 cut(s)	66, 142, 943, 1032, 1497, 1511
PspPI	GGNCC	3 cut(s)	489, 1496, 1567
PsuI	RGATCY	2 cut(s)	976, 1030
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	3 cut(s)	267, 363, 574
RsaNI	GTAC	3 cut(s)	266, 362, 573
RseI	CAYNNNNRTG	2 cut(s)	714, 1575
SaqAI	TTAA	3 cut(s)	596, 653, 1007
Sau3AI	GATC	2 cut(s)	976, 1030
Sau96I	GGNCC	3 cut(s)	489, 1496, 1567
SchI	GAGTC	2 cut(s)	29, 484
ScrFI	CCNGG	5 cut(s)	47, 374, 981, 1241, 1305
SduI	GDGCHC	2 cut(s)	327, 751
SfaNI	GCATC	3 cut(s)	442, 529, 1142
SfcI	CTRYAG	1 cut(s)	958
SinI	GGWCC	1 cut(s)	1496
SmiMI	CAYNNNNRTG	2 cut(s)	714, 1575
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SphI	GCATGC	1 cut(s)	546
SsiI	CCGC	6 cut(s)	311, 317, 492, 745, 794, 1507
SspMI	CTAG	2 cut(s)	342, 1356
StyD4I	CCNGG	5 cut(s)	45, 372, 979, 1239, 1303
StyI	CCWWGG	4 cut(s)	166, 547, 1181, 1528
TaaI	ACNGT	7 cut(s)	140, 517, 622, 658, 844, 1164, 1178
TaiI	ACGT	7 cut(s)	81, 165, 387, 609, 1047, 1256, 1386
TaqI	TCGA	3 cut(s)	75, 129, 1441
TaqII	GACCGA	1 cut(s)	893
TatI	WGTACW	2 cut(s)	265, 361
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	3 cut(s)	418, 1322, 1330
Tru1I	TTAA	3 cut(s)	596, 653, 1007
Tru9I	TTAA	3 cut(s)	596, 653, 1007
TscAI	CASTG	6 cut(s)	590, 627, 787, 942, 1139, 1181
TseFI	GTSAC	1 cut(s)	1254
Tsp45I	GTSAC	1 cut(s)	1254
TspDTI	ATGAA	4 cut(s)	473, 869, 918, 1596
TspRI	CASTG	6 cut(s)	590, 627, 787, 942, 1139, 1181
Vha464I	CTTAAG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	1496
XapI	RAATTY	2 cut(s)	773, 856
XceI	RCATGY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1459
XspI	CTAG	2 cut(s)	342, 1356
ZraI	GACGTC	2 cut(s)	163, 1254
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.