Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

60543761 .. 60552000

Gene Structure 8240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33360

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGGGGACTGATCGAGAATATAGGGCAGACGTCATTGCATTGATGTGCTCTTGCAGACTGGAGCTAGGGTTGAGGCTGCTGATTTCAATGGGAGACAGCGCAGTTCACGTTACTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTAGCAAAGTATCATGCTGATTTGGATGGACCTGACAATGAGGTGGTTATCTCCAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTTTTCTGCACAATAATCATTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTATTGGTTTCTGGGGATGGGCAGCTACTTCATTTGCAGTGGGTTCGCTCATTATGTTCTACAGGTGCAGTAGTCAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTAAATATTGGTTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGTCCCACATGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

207

Amino Acids

22.74

Weight (kDa)

8.39

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
AciI	CCGC	2 cut(s)	5, 217
AclWI	GGATC	3 cut(s)	443, 497, 510
AcsI	RAATTY	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	4 cut(s)	90, 145, 311, 526
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	3 cut(s)	67, 344, 395
AluI	AGCT	3 cut(s)	67, 344, 395
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	90, 561
AlwI	GGATC	3 cut(s)	443, 497, 510
ApeKI	GCWGC	5 cut(s)	79, 214, 341, 368, 392
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	5 cut(s)	66, 226, 353, 355, 404
BccI	CCATC	3 cut(s)	173, 381, 538
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	90, 561
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	430
BisI	GCNGC	5 cut(s)	80, 215, 342, 369, 393
BlsI	GCNGC	5 cut(s)	81, 216, 343, 370, 394
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	453
BpmI	CTGGAG	2 cut(s)	83, 190
BpuEI	CTTGAG	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	66, 239
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	453
BseGI	GGATG	3 cut(s)	184, 392, 549
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	134, 345
BseNI	ACTGG	2 cut(s)	66, 239
BseXI	GCAGC	5 cut(s)	66, 226, 353, 355, 404
BsgI	GTGCAG	2 cut(s)	280, 457
BsiHKAI	GWGCWC	1 cut(s)	53
BslFI	GGGAC	3 cut(s)	22, 488, 594
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	90, 561
BsmFI	GGGAC	3 cut(s)	22, 488, 594
Bso31I	GGTCTC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	53, 223
Bsp143I	GATC	3 cut(s)	13, 448, 502
BspACI	CCGC	2 cut(s)	5, 217
BspCNI	CTCAG	2 cut(s)	133, 344
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	3 cut(s)	443, 497, 510
BspTNI	GGTCTC	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	66, 239
BssMI	GATC	3 cut(s)	13, 448, 502
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	316, 608
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	212, 219
BstDEI	CTNAG	2 cut(s)	120, 331
BstF5I	GGATG	3 cut(s)	184, 392, 549
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	16, 451, 505
BstMAI	GTCTC	2 cut(s)	90, 561
BstMBI	GATC	3 cut(s)	13, 448, 502
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	430
BstV1I	GCAGC	5 cut(s)	66, 226, 353, 355, 404
BstX2I	RGATCY	2 cut(s)	448, 502
BstYI	RGATCY	2 cut(s)	448, 502
BtsCI	GGATG	3 cut(s)	184, 392, 549
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	232, 414, 604
Cac8I	GCNNGC	2 cut(s)	212, 219
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	2 cut(s)	167, 615
CviJI	RGCY	7 cut(s)	67, 79, 210, 221, 344, 395, 456
CviKI_1	RGCY	7 cut(s)	67, 79, 210, 221, 344, 395, 456
DdeI	CTNAG	2 cut(s)	120, 331
DpnI	GATC	3 cut(s)	15, 450, 504
DpnII	GATC	3 cut(s)	13, 448, 502
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	2 cut(s)	170, 618
FaiI	YATR	9 cut(s)	24, 126, 168, 326, 425, 489, 491, 541, 616
FaqI	GGGAC	3 cut(s)	22, 488, 594
FatI	CATG	2 cut(s)	166, 614
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	80, 215, 342, 369, 393
FokI	GGATG	3 cut(s)	191, 399, 556
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	5 cut(s)	80, 215, 342, 369, 393
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	5 cut(s)	80, 215, 342, 369, 393
GsuI	CTGGAG	2 cut(s)	83, 190
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	170, 618
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	354, 587
Hpy188III	TCNNGA	3 cut(s)	17, 142, 446
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	316, 608
HpyCH4IV	ACGT	2 cut(s)	33, 111
HpyCH4V	TGCA	7 cut(s)	41, 57, 266, 297, 407, 438, 576
HpyF3I	CTNAG	2 cut(s)	120, 331
HpySE526I	ACGT	2 cut(s)	33, 111
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	170, 618
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	13, 448, 502
LmnI	GCTCC	4 cut(s)	64, 286, 349, 602
Lsp1109I	GCAGC	5 cut(s)	66, 226, 353, 355, 404
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	2 cut(s)	33, 111
MaeIII	GTNAC	2 cut(s)	112, 361
MalI	GATC	3 cut(s)	15, 450, 504
MboI	GATC	3 cut(s)	13, 448, 502
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	2 cut(s)	448, 502
MhlI	GDGCHC	2 cut(s)	53, 223
MluCI	AATT	4 cut(s)	246, 529, 550, 619
MnlI	CCTC	4 cut(s)	69, 187, 493, 516
MseI	TTAA	2 cut(s)	239, 512
MslI	CAYNNNNRTG	2 cut(s)	46, 538
MspA1I	CMGCKG	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
NdeII	GATC	3 cut(s)	13, 448, 502
NlaIII	CATG	2 cut(s)	170, 618
NlaIV	GGNNCC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	618
PciI	ACATGT	1 cut(s)	614
PkrI	GCNGC	5 cut(s)	81, 216, 343, 370, 394
PscI	ACATGT	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	448, 502
RseI	CAYNNNNRTG	2 cut(s)	46, 538
SaqAI	TTAA	2 cut(s)	239, 512
SatI	GCNGC	5 cut(s)	80, 215, 342, 369, 393
Sau3AI	GATC	3 cut(s)	13, 448, 502
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	53, 223
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	46, 538
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	246, 529, 550, 619
SsiI	CCGC	2 cut(s)	5, 217
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	316, 608
TaiI	ACGT	2 cut(s)	36, 114
TaqI	TCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	246, 529, 550, 619
Tru1I	TTAA	2 cut(s)	239, 512
Tru9I	TTAA	2 cut(s)	239, 512
TscAI	CASTG	3 cut(s)	239, 414, 611
TseI	GCWGC	5 cut(s)	79, 214, 341, 368, 392
TspDTI	ATGAA	3 cut(s)	341, 390, 522
TspRI	CASTG	3 cut(s)	239, 414, 611
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	1 cut(s)	618
XspI	CTAG	1 cut(s)	68
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.