Rroxscaffold_2G00089650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003809
Physical Location & Seq
Reverse (-)
11583275 .. 11583592
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089650.1

Sequence Viewer

Length: 318 bp
ATGGCCTCTTCGCAGTTAGAGATAGTCTCCTCGTCGTCGTCGTCGGACTCAAAACCCCTTGACCAAAATCCTACCGCAGCCGCCGTCGAAGTCCCTATAATCGACGTCTCCTCCGTTTCGCTTACGACGATTTTCCCAAACTCGGGAAGTTCATTGAGGAAGACGGTGCCTCTCTCTCTCGGCCGGATGTCCATGGCTACTACACGCTCATTGGGCTTGCGGCTGGATGGCTCACACCTCAATGCCTCAATGATGCATCCGATGCTCAATGAAGAGTTTATGGGTTTTCGTGGATTTGAGAAGGAGATGATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.28

Weight (kDa)

5.24

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 166
AciI CCGC 3 cut(s) 75, 81, 220
AcoI YGGCCR 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 142, 143
Alw26I GTCTC 2 cut(s) 31, 112
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 2 cut(s) 3, 181
ApeKI GCWGC 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 142
BanI GGYRCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 221, 304
BceAI ACGGC 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 31, 112
BisI GCNGC 3 cut(s) 78, 81, 221
BlsI GCNGC 3 cut(s) 79, 82, 222
BmeT110I CYCGRG 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 3 cut(s) 243, 252, 265
BpiI GAAGAC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 143
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 3 cut(s) 192, 232, 256
BseLI CCNNNNNNNGG 2 cut(s) 142, 143
BseRI GAGGAG 2 cut(s) 19, 100
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 5, 183
BshNI GGYRCC 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 142, 143
BsmAI GTCTC 2 cut(s) 31, 112
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 5, 183
BsoBI CYCGRG 1 cut(s) 142
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 3 cut(s) 75, 81, 220
BspANI GGCC 2 cut(s) 5, 183
BspLI GGNNCC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 13, 267
BstACI GRCGYC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 3 cut(s) 192, 232, 256
BstMAI GTCTC 2 cut(s) 31, 112
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 213, 262
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 167
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 5, 183
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 3 cut(s) 192, 232, 256
Cac8I GCNNGC 1 cut(s) 218
CviAII CATG 1 cut(s) 193
CviJI RGCY 7 cut(s) 5, 80, 183, 197, 216, 223, 231
CviKI_1 RGCY 7 cut(s) 5, 80, 183, 197, 216, 223, 231
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 13, 267
EarI CTCTTC 2 cut(s) 13, 267
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 192
Eco52I CGGCCG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 98, 194, 281
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 78, 81, 221
FokI GGATG 3 cut(s) 199, 239, 243
Fsp4HI GCNGC 3 cut(s) 78, 81, 221
GluI GCNGC 3 cut(s) 78, 81, 221
HaeIII GGCC 2 cut(s) 5, 183
HapII CCGG 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 196
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 46, 261
Hpy188III TCNNGA 1 cut(s) 144
Hpy99I CGWCG 7 cut(s) 37, 40, 43, 46, 89, 107, 130
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 262
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 196
LpnPI CCDG 2 cut(s) 197, 209
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 3 cut(s) 243, 252, 265
MaeII ACGT 1 cut(s) 105
MboII GAAGA 2 cut(s) 172, 284
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 7 cut(s) 16, 40, 121, 150, 180, 248, 256
Mph1103I ATGCAT 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 213, 262
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 168
NmeAIII GCCGAG 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 3 cut(s) 38, 111, 125
PkrI GCNGC 3 cut(s) 79, 82, 222
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 240
SatI GCNGC 3 cut(s) 78, 81, 221
SchI GAGTC 1 cut(s) 41
SetI ASST 2 cut(s) 108, 240
SfaNI GCATC 3 cut(s) 243, 252, 265
SmiMI CAYNNNNRTG 1 cut(s) 240
SsiI CCGC 3 cut(s) 75, 81, 220
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 87, 102
TauI GCSGC 2 cut(s) 83, 223
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 141, 285
TspGWI ACGGA 1 cut(s) 103
ZraI GACGTC 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.