Rh6BG170100

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
28136743 .. 28150819
14077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG170100.1

Sequence Viewer

Length: 1641 bp
ATGGTTTCTTCTGAGATAGAGATAGTCTCGTCGTCGTCATCGGACTCAAAACCCCTTGACCAAAACCCTACCGCCGTCGAGGTCCCTATAATCGACGTCTTCTCTGCTTCTGCTTACGGCGATTTCCCCAAACTCAGGAAGTTCGTCGAGGAAGACGGTGCCTCTCTCTCCCAGCCTGATGGCCATGGCTACTACGCACTCCATTGGGCTGCTCTCAATAACTTCCCTGATATCGCCCACTACATAATTCAGCATGGCGGGGACGTGAATGCCACCGAGAATATAGGGCAGACAGCATTGCATTGGGCAGCCGTGCAGGGTGCAATCGCAGCGGCCGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCTGCTGATGTAAATGGGTACCGGGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATTGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATGTGGAGGCTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTCTCTAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTGTTGTGCACAATAATCAGTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTGTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTGAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGCCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCGAGATTTCTTTATTTTGATCTGCATGGGAACATTGACATCAACCATTTCTGCTGCTGTCACAGTTCAAAGGATTTGGACTGCAGTGCCAGCATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAAGTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTACGACTCTGACAACGGCACAAGCATCTCAGATAGCTCGAAATATCACAACTAATGAACTGGCAAATGCTATTCGTTATGGGTATCTTCGTGGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACTGTGCAGATTTTTTCATTCAGGGCTATACAGACGATGATGAAATTGCCTGGCCTCCATTGCAGCAGGTTGCCAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

60.08

Weight (kDa)

6.39

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 36 - 125 1.7e-12 Ankyrin repeats (3 copies)
Ank_3 PF13606 62 - 91 8.9e-06 Ankyrin repeat
Ank_4 PF13637 100 - 145 6e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 126 - 192 4.4e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 182 - 252 3.4e-09 Ankyrin repeats (3 copies)
DHHC PF01529 369 - 496 3.9e-33 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 1618
Acc65I GGTACC 1 cut(s) 387
AccB1I GGYRCC 3 cut(s) 158, 387, 1551
AciI CCGC 5 cut(s) 72, 258, 332, 763, 1525
AclWI GGATC 3 cut(s) 989, 1043, 1056
AcoI YGGCCR 2 cut(s) 181, 333
AcsI RAATTY 1 cut(s) 792
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 3 cut(s) 389, 592, 977
AfiI CCNNNNNNNGG 2 cut(s) 135, 763
AflIII ACRYGT 1 cut(s) 1160
AgsI TTSAA 5 cut(s) 436, 1060, 1072, 1301, 1367
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 3 cut(s) 997, 1199, 1610
AluBI AGCT 4 cut(s) 359, 890, 941, 1457
AluI AGCT 4 cut(s) 359, 890, 941, 1457
Alw21I GWGCWC 2 cut(s) 345, 845
Alw26I GTCTC 2 cut(s) 31, 1107
Alw44I GTGCAC 1 cut(s) 841
AlwI GGATC 3 cut(s) 989, 1043, 1056
AoxI GGCC 3 cut(s) 181, 333, 1613
ApaLI GTGCAC 1 cut(s) 841
ApoI RAATTY 1 cut(s) 792
AseI ATTAAT 1 cut(s) 671
Asp718I GGTACC 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 82, 1514
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 688
AsuII TTCGAA 1 cut(s) 1531
AvaII GGWCC 2 cut(s) 82, 1514
BaeGI GKGCMC 1 cut(s) 845
BalI TGGCCA 1 cut(s) 183
BamHI GGATCC 1 cut(s) 1048
BanI GGYRCC 3 cut(s) 158, 387, 1551
BanII GRGCYC 1 cut(s) 769
BbsI GAAGAC 2 cut(s) 91, 159
Bbv12I GWGCWC 2 cut(s) 345, 845
BccI CCATC 5 cut(s) 173, 927, 1084, 1197, 1514
BceAI ACGGC 5 cut(s) 59, 133, 296, 1452, 1539
BcgI CGANNNNNNTGC 2 cut(s) 942, 976
BciT130I CCWGG 3 cut(s) 999, 1201, 1612
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 2 cut(s) 31, 1107
BfaI CTAG 2 cut(s) 360, 753
BfmI CTRYAG 1 cut(s) 1314
BfuAI ACCTGC 1 cut(s) 1618
BglI GCCNNNNNGGC 1 cut(s) 1327
Bme1390I CCNGG 4 cut(s) 392, 999, 1201, 1612
Bme18I GGWCC 2 cut(s) 82, 1514
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 82, 1514
BmiI GGNNCC 5 cut(s) 84, 160, 389, 1050, 1553
BmrFI CCNGG 4 cut(s) 392, 999, 1201, 1612
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 4 cut(s) 460, 547, 722, 1454
BmuI ACTGGG 1 cut(s) 613
BpiI GAAGAC 2 cut(s) 91, 159
BplI GAGNNNNNCTC 2 cut(s) 11, 43
Bpu14I TTCGAA 1 cut(s) 1531
BpuEI CTTGAG 1 cut(s) 753
BpuMI CCSGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 1168
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 1107
BsaJI CCNNGG 3 cut(s) 184, 565, 1199
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 763
Bse1I ACTGG 4 cut(s) 608, 785, 1485, 1635
Bse3DI GCAATG 2 cut(s) 296, 1619
BseBI CCWGG 3 cut(s) 999, 1201, 1612
BseCI ATCGAT 1 cut(s) 1168
BseDI CCNNGG 3 cut(s) 184, 565, 1199
BseGI GGATG 2 cut(s) 938, 1095
BseLI CCNNNNNNNGG 2 cut(s) 135, 763
BseMI GCAATG 2 cut(s) 296, 1619
BseMII CTCAG 4 cut(s) 148, 425, 891, 1463
BseNI ACTGG 4 cut(s) 608, 785, 1485, 1635
BseSI GKGCMC 1 cut(s) 845
BseX3I CGGCCG 1 cut(s) 333
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 3 cut(s) 335, 1003, 1587
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 3 cut(s) 183, 335, 1615
BshNI GGYRCC 3 cut(s) 158, 387, 1551
BshVI ATCGAT 1 cut(s) 1168
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 2 cut(s) 345, 845
BsiSI CCGG 1 cut(s) 391
BslFI GGGAC 4 cut(s) 68, 275, 1034, 1182
BslI CCNNNNNNNGG 2 cut(s) 135, 763
BsmAI GTCTC 2 cut(s) 31, 1107
BsmFI GGGAC 4 cut(s) 68, 275, 1034, 1182
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 3 cut(s) 183, 335, 1615
Bso31I GGTCTC 1 cut(s) 1107
Bsp119I TTCGAA 1 cut(s) 1531
Bsp1286I GDGCHC 3 cut(s) 345, 769, 845
Bsp1407I TGTACA 1 cut(s) 975
Bsp143I GATC 3 cut(s) 994, 1048, 1251
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 5 cut(s) 72, 258, 332, 763, 1525
BspANI GGCC 3 cut(s) 183, 335, 1615
BspCNI CTCAG 5 cut(s) 4, 147, 424, 890, 1462
BspDI ATCGAT 1 cut(s) 1168
BspLI GGNNCC 5 cut(s) 84, 160, 389, 1050, 1553
BspMAI CTGCAG 1 cut(s) 1318
BspMI ACCTGC 1 cut(s) 1618
BspPI GGATC 3 cut(s) 989, 1043, 1056
BspT104I TTCGAA 1 cut(s) 1531
BspT107I GGYRCC 3 cut(s) 158, 387, 1551
BspTNI GGTCTC 1 cut(s) 1107
BsrDI GCAATG 2 cut(s) 296, 1619
BsrGI TGTACA 1 cut(s) 975
BsrI ACTGG 4 cut(s) 608, 785, 1485, 1635
BssECI CCNNGG 3 cut(s) 184, 565, 1199
BssMI GATC 3 cut(s) 994, 1048, 1251
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 184, 565
Bst2UI CCWGG 3 cut(s) 999, 1201, 1612
Bst4CI ACNGT 7 cut(s) 158, 535, 640, 862, 1182, 1297, 1565
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 975
BstBI TTCGAA 1 cut(s) 1531
BstC8I GCNNGC 6 cut(s) 562, 634, 655, 758, 765, 1323
BstDEI CTNAG 5 cut(s) 12, 134, 411, 877, 1449
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 938, 1095
BstKTI GATC 3 cut(s) 997, 1051, 1254
BstMAI GTCTC 2 cut(s) 31, 1107
BstMBI GATC 3 cut(s) 994, 1048, 1251
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 4 cut(s) 329, 1322, 1327, 1621
BstNI CCWGG 3 cut(s) 999, 1201, 1612
BstNSI RCATGY 1 cut(s) 1164
BstSCI CCNGG 4 cut(s) 390, 997, 1199, 1610
BstSFI CTRYAG 1 cut(s) 1314
BstSLI GKGCMC 1 cut(s) 845
BstV2I GAAGAC 2 cut(s) 91, 159
BstX2I RGATCY 2 cut(s) 994, 1048
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 2 cut(s) 994, 1048
BstZI CGGCCG 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 1168
BsuRI GGCC 3 cut(s) 183, 335, 1615
BsuTUI ATCGAT 1 cut(s) 1168
BtgI CCRYGG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 938, 1095
BtsI GCAGTG 3 cut(s) 960, 1150, 1323
BtsIMutI CAGTG 6 cut(s) 601, 636, 778, 960, 1150, 1323
BveI ACCTGC 1 cut(s) 1618
Cac8I GCNNGC 6 cut(s) 562, 634, 655, 758, 765, 1323
Cfr13I GGNCC 2 cut(s) 82, 1514
ClaI ATCGAT 1 cut(s) 1168
Csp6I GTAC 3 cut(s) 388, 591, 976
CviAII CATG 9 cut(s) 185, 254, 458, 650, 1161, 1258, 1326, 1355, 1547
CviQI GTAC 3 cut(s) 388, 591, 976
DdeI CTNAG 5 cut(s) 12, 134, 411, 877, 1449
DpnI GATC 3 cut(s) 996, 1050, 1253
DpnII GATC 3 cut(s) 994, 1048, 1251
DraI TTTAAA 1 cut(s) 615
EaeI YGGCCR 2 cut(s) 181, 333
EagI CGGCCG 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
EclXI CGGCCG 1 cut(s) 333
Eco130I CCWWGG 2 cut(s) 184, 565
Eco24I GRGCYC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 1107
Eco32I GATATC 2 cut(s) 232, 1206
Eco47I GGWCC 2 cut(s) 82, 1514
Eco52I CGGCCG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 997, 1199, 1610
EcoRV GATATC 2 cut(s) 232, 1206
EcoT14I CCWWGG 2 cut(s) 184, 565
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 2 cut(s) 184, 565
FaeI CATG 9 cut(s) 188, 257, 461, 653, 1164, 1261, 1329, 1358, 1550
FaqI GGGAC 4 cut(s) 68, 275, 1034, 1182
FatI CATG 9 cut(s) 184, 253, 457, 649, 1160, 1257, 1325, 1354, 1546
FauI CCCGC 2 cut(s) 251, 756
FokI GGATG 2 cut(s) 945, 1102
FriOI GRGCYC 1 cut(s) 769
FspBI CTAG 2 cut(s) 360, 753
GsaI CCCAGC 1 cut(s) 175
HaeIII GGCC 3 cut(s) 183, 335, 1615
HapII CCGG 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 9 cut(s) 188, 257, 461, 653, 1164, 1261, 1329, 1358, 1550
HinfI GANTC 4 cut(s) 44, 493, 1348, 1426
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 2 cut(s) 400, 843
Hpy188I TCNGA 8 cut(s) 13, 43, 708, 718, 900, 1133, 1431, 1452
Hpy188III TCNNGA 3 cut(s) 136, 433, 1517
Hpy8I GTNNAC 2 cut(s) 400, 843
Hpy99I CGWCG 5 cut(s) 34, 37, 80, 98, 149
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 7 cut(s) 158, 535, 640, 862, 1182, 1297, 1565
HpyCH4IV ACGT 3 cut(s) 96, 264, 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 1322, 1327, 1621
HpyF3I CTNAG 5 cut(s) 12, 134, 411, 877, 1449
HpySE526I ACGT 3 cut(s) 96, 264, 402
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 9 cut(s) 188, 257, 461, 653, 1164, 1261, 1329, 1358, 1550
KpnI GGTACC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 994, 1048, 1251
LmnI GCTCC 4 cut(s) 356, 832, 895, 1148
LweI GCATC 4 cut(s) 460, 547, 722, 1454
MaeI CTAG 2 cut(s) 360, 753
MaeII ACGT 3 cut(s) 96, 264, 402
MaeIII GTNAC 2 cut(s) 907, 1291
MalI GATC 3 cut(s) 996, 1050, 1253
MboI GATC 3 cut(s) 994, 1048, 1251
MboII GAAGA 7 cut(s) 91, 164, 491, 817, 1004, 1349, 1499
MflI RGATCY 2 cut(s) 994, 1048
MhlI GDGCHC 3 cut(s) 345, 769, 845
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 7 cut(s) 246, 668, 792, 1075, 1096, 1210, 1605
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 3 cut(s) 38, 502, 1420
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 4 cut(s) 614, 671, 785, 1639
MslI CAYNNNNRTG 3 cut(s) 732, 1084, 1390
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 332, 763
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 4 cut(s) 392, 999, 1201, 1612
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 3 cut(s) 999, 1201, 1612
MwoI GCNNNNNNNGC 4 cut(s) 329, 1322, 1327, 1621
NciI CCSGG 1 cut(s) 392
NcoI CCATGG 1 cut(s) 184
NdeII GATC 3 cut(s) 994, 1048, 1251
NlaIII CATG 9 cut(s) 188, 257, 461, 653, 1164, 1261, 1329, 1358, 1550
NlaIV GGNNCC 5 cut(s) 84, 160, 389, 1050, 1553
NmuCI GTSAC 1 cut(s) 1291
NspI RCATGY 1 cut(s) 1164
NspV TTCGAA 1 cut(s) 1531
PciI ACATGT 1 cut(s) 1160
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 1348
PleI GAGTC 3 cut(s) 38, 501, 1420
PpsI GAGTC 3 cut(s) 38, 501, 1420
PpuMI RGGWCCY 1 cut(s) 82
PscI ACATGT 1 cut(s) 1160
PshBI ATTAAT 1 cut(s) 671
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 3 cut(s) 997, 1199, 1610
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 3 cut(s) 997, 1199, 1610
PspN4I GGNNCC 5 cut(s) 84, 160, 389, 1050, 1553
PspPI GGNCC 2 cut(s) 82, 1514
PspPPI RGGWCCY 1 cut(s) 82
PstI CTGCAG 1 cut(s) 1318
PsuI RGATCY 2 cut(s) 994, 1048
RsaI GTAC 3 cut(s) 389, 592, 977
RsaNI GTAC 3 cut(s) 388, 591, 976
RseI CAYNNNNRTG 3 cut(s) 732, 1084, 1390
SaqAI TTAA 4 cut(s) 614, 671, 785, 1639
Sau3AI GATC 3 cut(s) 994, 1048, 1251
Sau96I GGNCC 2 cut(s) 82, 1514
SchI GAGTC 3 cut(s) 38, 502, 1420
ScrFI CCNGG 4 cut(s) 392, 999, 1201, 1612
SduI GDGCHC 3 cut(s) 345, 769, 845
SfaNI GCATC 4 cut(s) 460, 547, 722, 1454
SfcI CTRYAG 1 cut(s) 1314
SfuI TTCGAA 1 cut(s) 1531
SinI GGWCC 2 cut(s) 82, 1514
SmiMI CAYNNNNRTG 3 cut(s) 732, 1084, 1390
SmlI CTYRAG 1 cut(s) 768
SmoI CTYRAG 1 cut(s) 768
Sse9I AATT 7 cut(s) 246, 668, 792, 1075, 1096, 1210, 1605
SsiI CCGC 5 cut(s) 72, 258, 332, 763, 1525
SspI AATATT 1 cut(s) 1063
SspMI CTAG 2 cut(s) 360, 753
StyD4I CCNGG 4 cut(s) 390, 997, 1199, 1610
StyI CCWWGG 2 cut(s) 184, 565
TaaI ACNGT 7 cut(s) 158, 535, 640, 862, 1182, 1297, 1565
TaiI ACGT 3 cut(s) 99, 267, 405
TaqI TCGA 6 cut(s) 78, 93, 147, 1168, 1459, 1531
TasI AATT 7 cut(s) 246, 668, 792, 1075, 1096, 1210, 1605
TatI WGTACW 1 cut(s) 975
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 1348
Tru1I TTAA 4 cut(s) 614, 671, 785, 1639
Tru9I TTAA 4 cut(s) 614, 671, 785, 1639
TscAI CASTG 6 cut(s) 608, 643, 785, 960, 1157, 1323
TseFI GTSAC 1 cut(s) 1291
Tsp45I GTSAC 1 cut(s) 1291
TspDTI ATGAA 9 cut(s) 491, 638, 887, 936, 1068, 1340, 1491, 1567, 1617
TspRI CASTG 6 cut(s) 608, 643, 785, 960, 1157, 1323
VneI GTGCAC 1 cut(s) 841
VpaK11BI GGWCC 2 cut(s) 82, 1514
VspI ATTAAT 1 cut(s) 671
XapI RAATTY 1 cut(s) 792
XceI RCATGY 1 cut(s) 1164
XspI CTAG 2 cut(s) 360, 753
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.