Rh6DG155400

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003809
Physical Location & Seq
Reverse (-)
23355934 .. 23368434
12501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG155400.1

Sequence Viewer

Length: 1644 bp
ATGGTCTCTTCAGAGATAGAGATAGTCTCGTCGTCGTCGGACTCAAAACCCCTTGACCAAAACCCTACCGCCGTCGCCGTCGAGGTCCCTATAATCGACGTCTTCTCTGCTTCTGCTTACGGCGATTTCCCCAAACTCAGGAAGTTCGTCGAGGAAGACGGTGCCTCTCTCTCCCAGCCTGATGTCCATGGCTACTACGCACTCCATTGGGCTGCTCTCAATAACTTCCCTGATCTCGCCCACTACATAATTCAGCATGGCGGGGACGTGAATGCCACCGAGAATATAGGGCAGACAGCATTGCATTGGGCAGCCGTGCAGGGTGCAATCGCAGCGGCTGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCTGCTGATGTAAATGGGTACCGGGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATGTGGAGGCTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTCTCTAGCCAGCAGCGGGCCCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTGTTGTGCACAATAATCAGTCAAACAGTTCTCTTTATGAGTTCAGTTCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTGTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTGAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGCCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCGAGATTTCTTTATTTTGATCTGCATGGGAACATTGACATCAACCATTTCTGCTGCTGTCACAGTTCAAAGGATTTGGACTGCAGTGCCAGCATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAAGTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTACGACTCTGACAACGGCACAAGCATCTCAGATAGCTCGAAATATCACAACTAATGAACTGGCAAATGCTATTCGTTATGGGTATCTTCGTGGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACTGTGCAGATTTTTTCATTCAGGGCTATACAGACGATGCTGAAATTGCCTGGCCTCCATTGCAGCAGGTTGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

547

Amino Acids

60.14

Weight (kDa)

6.48

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 37 - 126 5.5e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 101 - 146 6e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 128 - 193 5e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 191 - 253 1.4e-08 Ankyrin repeats (3 copies)
DHHC PF01529 370 - 497 3.9e-33 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 1621
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 3 cut(s) 161, 390, 1554
AciI CCGC 5 cut(s) 69, 261, 335, 766, 1528
AclWI GGATC 3 cut(s) 992, 1046, 1059
AcsI RAATTY 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 3 cut(s) 392, 595, 980
AfiI CCNNNNNNNGG 2 cut(s) 138, 766
AflIII ACRYGT 1 cut(s) 1163
AgsI TTSAA 5 cut(s) 439, 1063, 1075, 1304, 1370
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 3 cut(s) 1000, 1202, 1613
AluBI AGCT 4 cut(s) 362, 893, 944, 1460
AluI AGCT 4 cut(s) 362, 893, 944, 1460
Alw21I GWGCWC 2 cut(s) 348, 848
Alw26I GTCTC 3 cut(s) 10, 31, 1110
Alw44I GTGCAC 1 cut(s) 844
AlwI GGATC 3 cut(s) 992, 1046, 1059
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 2 cut(s) 768, 1616
ApaI GGGCCC 1 cut(s) 772
ApaLI GTGCAC 1 cut(s) 844
ApoI RAATTY 1 cut(s) 795
AseI ATTAAT 1 cut(s) 674
Asp718I GGTACC 1 cut(s) 390
AspS9I GGNCC 4 cut(s) 85, 768, 769, 1517
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 691
AsuII TTCGAA 1 cut(s) 1534
AvaII GGWCC 2 cut(s) 85, 1517
BaeGI GKGCMC 2 cut(s) 772, 848
BamHI GGATCC 1 cut(s) 1051
BanI GGYRCC 3 cut(s) 161, 390, 1554
BanII GRGCYC 1 cut(s) 772
BbsI GAAGAC 2 cut(s) 94, 162
Bbv12I GWGCWC 2 cut(s) 348, 848
BccI CCATC 4 cut(s) 930, 1087, 1200, 1517
BceAI ACGGC 6 cut(s) 56, 62, 136, 299, 1455, 1542
BcgI CGANNNNNNTGC 2 cut(s) 945, 979
BciT130I CCWGG 3 cut(s) 1002, 1204, 1615
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 10, 31, 1110
BfaI CTAG 2 cut(s) 363, 756
BfmI CTRYAG 1 cut(s) 1317
BfuAI ACCTGC 1 cut(s) 1621
BglI GCCNNNNNGGC 1 cut(s) 1330
Bme1390I CCNGG 4 cut(s) 395, 1002, 1204, 1615
Bme18I GGWCC 2 cut(s) 85, 1517
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 4 cut(s) 85, 768, 769, 1517
BmiI GGNNCC 6 cut(s) 87, 163, 392, 770, 1053, 1556
BmrFI CCNGG 4 cut(s) 395, 1002, 1204, 1615
BmrI ACTGGG 1 cut(s) 616
BmsI GCATC 5 cut(s) 463, 550, 725, 1457, 1591
BmuI ACTGGG 1 cut(s) 616
BpiI GAAGAC 2 cut(s) 94, 162
BplI GAGNNNNNCTC 2 cut(s) 11, 43
Bpu14I TTCGAA 1 cut(s) 1534
BpuMI CCSGG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 1171
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 2 cut(s) 10, 1110
BsaJI CCNNGG 4 cut(s) 187, 568, 772, 1202
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 766
Bse1I ACTGG 4 cut(s) 611, 788, 1488, 1638
Bse3DI GCAATG 2 cut(s) 299, 1622
BseBI CCWGG 3 cut(s) 1002, 1204, 1615
BseCI ATCGAT 1 cut(s) 1171
BseDI CCNNGG 4 cut(s) 187, 568, 772, 1202
BseGI GGATG 2 cut(s) 941, 1098
BseLI CCNNNNNNNGG 2 cut(s) 138, 766
BseMI GCAATG 2 cut(s) 299, 1622
BseMII CTCAG 3 cut(s) 151, 428, 1466
BseNI ACTGG 4 cut(s) 611, 788, 1488, 1638
BseSI GKGCMC 2 cut(s) 772, 848
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 3 cut(s) 338, 1006, 1590
BshFI GGCC 2 cut(s) 770, 1618
BshNI GGYRCC 3 cut(s) 161, 390, 1554
BshVI ATCGAT 1 cut(s) 1171
BsiHKAI GWGCWC 2 cut(s) 348, 848
BsiSI CCGG 1 cut(s) 394
BslFI GGGAC 4 cut(s) 71, 278, 1037, 1185
BslI CCNNNNNNNGG 2 cut(s) 138, 766
BsmAI GTCTC 3 cut(s) 10, 31, 1110
BsmFI GGGAC 4 cut(s) 71, 278, 1037, 1185
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 770, 1618
Bso31I GGTCTC 2 cut(s) 10, 1110
Bsp119I TTCGAA 1 cut(s) 1534
Bsp120I GGGCCC 1 cut(s) 768
Bsp1286I GDGCHC 3 cut(s) 348, 772, 848
Bsp1407I TGTACA 1 cut(s) 978
Bsp143I GATC 4 cut(s) 232, 997, 1051, 1254
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 5 cut(s) 69, 261, 335, 766, 1528
BspANI GGCC 2 cut(s) 770, 1618
BspCNI CTCAG 3 cut(s) 150, 427, 1465
BspDI ATCGAT 1 cut(s) 1171
BspLI GGNNCC 6 cut(s) 87, 163, 392, 770, 1053, 1556
BspMAI CTGCAG 1 cut(s) 1321
BspMI ACCTGC 1 cut(s) 1621
BspPI GGATC 3 cut(s) 992, 1046, 1059
BspT104I TTCGAA 1 cut(s) 1534
BspT107I GGYRCC 3 cut(s) 161, 390, 1554
BspTNI GGTCTC 2 cut(s) 10, 1110
BsrDI GCAATG 2 cut(s) 299, 1622
BsrGI TGTACA 1 cut(s) 978
BsrI ACTGG 4 cut(s) 611, 788, 1488, 1638
BssECI CCNNGG 4 cut(s) 187, 568, 772, 1202
BssMI GATC 4 cut(s) 232, 997, 1051, 1254
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 3 cut(s) 187, 568, 772
Bst2UI CCWGG 3 cut(s) 1002, 1204, 1615
Bst4CI ACNGT 7 cut(s) 161, 538, 643, 865, 1185, 1300, 1568
Bst6I CTCTTC 2 cut(s) 13, 507
BstACI GRCGYC 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 978
BstBI TTCGAA 1 cut(s) 1534
BstC8I GCNNGC 6 cut(s) 565, 637, 658, 761, 768, 1326
BstDEI CTNAG 3 cut(s) 137, 414, 1452
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 941, 1098
BstKTI GATC 4 cut(s) 235, 1000, 1054, 1257
BstMAI GTCTC 3 cut(s) 10, 31, 1110
BstMBI GATC 4 cut(s) 232, 997, 1051, 1254
BstMWI GCNNNNNNNGC 5 cut(s) 332, 1325, 1330, 1610, 1624
BstNI CCWGG 3 cut(s) 1002, 1204, 1615
BstNSI RCATGY 1 cut(s) 1167
BstSCI CCNGG 4 cut(s) 393, 1000, 1202, 1613
BstSFI CTRYAG 1 cut(s) 1317
BstSLI GKGCMC 2 cut(s) 772, 848
BstV2I GAAGAC 2 cut(s) 94, 162
BstX2I RGATCY 2 cut(s) 997, 1051
BstYI RGATCY 2 cut(s) 997, 1051
Bsu15I ATCGAT 1 cut(s) 1171
BsuRI GGCC 2 cut(s) 770, 1618
BsuTUI ATCGAT 1 cut(s) 1171
BtgI CCRYGG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 941, 1098
BtsI GCAGTG 3 cut(s) 963, 1153, 1326
BtsIMutI CAGTG 6 cut(s) 604, 639, 781, 963, 1153, 1326
BveI ACCTGC 1 cut(s) 1621
Cac8I GCNNGC 6 cut(s) 565, 637, 658, 761, 768, 1326
CaiI CAGNNNCTG 1 cut(s) 338
Cfr13I GGNCC 4 cut(s) 85, 768, 769, 1517
ClaI ATCGAT 1 cut(s) 1171
Csp6I GTAC 3 cut(s) 391, 594, 979
CviAII CATG 9 cut(s) 188, 257, 461, 653, 1164, 1261, 1329, 1358, 1550
CviQI GTAC 3 cut(s) 391, 594, 979
DdeI CTNAG 3 cut(s) 137, 414, 1452
DpnI GATC 4 cut(s) 234, 999, 1053, 1256
DpnII GATC 4 cut(s) 232, 997, 1051, 1254
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 13, 507
EarI CTCTTC 2 cut(s) 13, 507
Eco130I CCWWGG 3 cut(s) 187, 568, 772
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 2 cut(s) 10, 1110
Eco32I GATATC 1 cut(s) 1209
Eco47I GGWCC 2 cut(s) 85, 1517
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 3 cut(s) 1000, 1202, 1613
EcoRV GATATC 1 cut(s) 1209
EcoT14I CCWWGG 3 cut(s) 187, 568, 772
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 3 cut(s) 187, 568, 772
FaeI CATG 9 cut(s) 191, 260, 464, 656, 1167, 1264, 1332, 1361, 1553
FaqI GGGAC 4 cut(s) 71, 278, 1037, 1185
FatI CATG 9 cut(s) 187, 256, 460, 652, 1163, 1260, 1328, 1357, 1549
FauI CCCGC 2 cut(s) 254, 759
FokI GGATG 2 cut(s) 948, 1105
FriOI GRGCYC 1 cut(s) 772
FspBI CTAG 2 cut(s) 363, 756
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 2 cut(s) 770, 1618
HapII CCGG 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 9 cut(s) 191, 260, 464, 656, 1167, 1264, 1332, 1361, 1553
HinfI GANTC 4 cut(s) 41, 496, 1351, 1429
HpaII CCGG 1 cut(s) 394
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 2 cut(s) 403, 846
Hpy188I TCNGA 8 cut(s) 13, 40, 711, 721, 903, 1136, 1434, 1455
Hpy188III TCNNGA 3 cut(s) 139, 436, 1520
Hpy8I GTNNAC 2 cut(s) 403, 846
Hpy99I CGWCG 7 cut(s) 34, 37, 40, 77, 83, 101, 152
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 7 cut(s) 161, 538, 643, 865, 1185, 1300, 1568
HpyCH4IV ACGT 3 cut(s) 99, 267, 405
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 1325, 1330, 1610, 1624
HpyF3I CTNAG 3 cut(s) 137, 414, 1452
HpySE526I ACGT 3 cut(s) 99, 267, 405
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 9 cut(s) 191, 260, 464, 656, 1167, 1264, 1332, 1361, 1553
KpnI GGTACC 1 cut(s) 394
Kzo9I GATC 4 cut(s) 232, 997, 1051, 1254
LmnI GCTCC 4 cut(s) 359, 835, 898, 1151
LweI GCATC 5 cut(s) 463, 550, 725, 1457, 1591
MaeI CTAG 2 cut(s) 363, 756
MaeII ACGT 3 cut(s) 99, 267, 405
MaeIII GTNAC 2 cut(s) 910, 1294
MalI GATC 4 cut(s) 234, 999, 1053, 1256
MboI GATC 4 cut(s) 232, 997, 1051, 1254
MboII GAAGA 7 cut(s) 94, 167, 494, 820, 1007, 1352, 1502
MflI RGATCY 2 cut(s) 997, 1051
MhlI GDGCHC 3 cut(s) 348, 772, 848
MluCI AATT 7 cut(s) 249, 671, 795, 1078, 1099, 1213, 1608
MlyI GAGTC 3 cut(s) 35, 505, 1423
MmeI TCCRAC 1 cut(s) 18
MseI TTAA 4 cut(s) 617, 674, 788, 1642
MslI CAYNNNNRTG 3 cut(s) 735, 1087, 1393
MspA1I CMGCKG 2 cut(s) 335, 766
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 4 cut(s) 395, 1002, 1204, 1615
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 3 cut(s) 1002, 1204, 1615
MwoI GCNNNNNNNGC 5 cut(s) 332, 1325, 1330, 1610, 1624
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 187
NdeII GATC 4 cut(s) 232, 997, 1051, 1254
NlaIII CATG 9 cut(s) 191, 260, 464, 656, 1167, 1264, 1332, 1361, 1553
NlaIV GGNNCC 6 cut(s) 87, 163, 392, 770, 1053, 1556
NmuCI GTSAC 1 cut(s) 1294
NspI RCATGY 1 cut(s) 1167
NspV TTCGAA 1 cut(s) 1534
PciI ACATGT 1 cut(s) 1163
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 1351
PleI GAGTC 3 cut(s) 35, 504, 1423
PpsI GAGTC 3 cut(s) 35, 504, 1423
PpuMI RGGWCCY 1 cut(s) 85
PscI ACATGT 1 cut(s) 1163
PshBI ATTAAT 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 85
Psp6I CCWGG 3 cut(s) 1000, 1202, 1613
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 3 cut(s) 1000, 1202, 1613
PspN4I GGNNCC 6 cut(s) 87, 163, 392, 770, 1053, 1556
PspOMI GGGCCC 1 cut(s) 768
PspPI GGNCC 4 cut(s) 85, 768, 769, 1517
PspPPI RGGWCCY 1 cut(s) 85
PstI CTGCAG 1 cut(s) 1321
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 2 cut(s) 997, 1051
RsaI GTAC 3 cut(s) 392, 595, 980
RsaNI GTAC 3 cut(s) 391, 594, 979
RseI CAYNNNNRTG 3 cut(s) 735, 1087, 1393
SaqAI TTAA 4 cut(s) 617, 674, 788, 1642
Sau3AI GATC 4 cut(s) 232, 997, 1051, 1254
Sau96I GGNCC 4 cut(s) 85, 768, 769, 1517
SchI GAGTC 3 cut(s) 35, 505, 1423
ScrFI CCNGG 4 cut(s) 395, 1002, 1204, 1615
SduI GDGCHC 3 cut(s) 348, 772, 848
SfaNI GCATC 5 cut(s) 463, 550, 725, 1457, 1591
SfcI CTRYAG 1 cut(s) 1317
SfuI TTCGAA 1 cut(s) 1534
SinI GGWCC 2 cut(s) 85, 1517
SmiMI CAYNNNNRTG 3 cut(s) 735, 1087, 1393
Sse9I AATT 7 cut(s) 249, 671, 795, 1078, 1099, 1213, 1608
SsiI CCGC 5 cut(s) 69, 261, 335, 766, 1528
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 363, 756
StyD4I CCNGG 4 cut(s) 393, 1000, 1202, 1613
StyI CCWWGG 3 cut(s) 187, 568, 772
TaaI ACNGT 7 cut(s) 161, 538, 643, 865, 1185, 1300, 1568
TaiI ACGT 3 cut(s) 102, 270, 408
TaqI TCGA 6 cut(s) 81, 96, 150, 1171, 1462, 1534
TasI AATT 7 cut(s) 249, 671, 795, 1078, 1099, 1213, 1608
TatI WGTACW 1 cut(s) 978
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 1351
Tru1I TTAA 4 cut(s) 617, 674, 788, 1642
Tru9I TTAA 4 cut(s) 617, 674, 788, 1642
TscAI CASTG 6 cut(s) 611, 646, 788, 963, 1160, 1326
TseFI GTSAC 1 cut(s) 1294
Tsp45I GTSAC 1 cut(s) 1294
TspDTI ATGAA 7 cut(s) 494, 641, 939, 1071, 1343, 1494, 1570
TspRI CASTG 6 cut(s) 611, 646, 788, 963, 1160, 1326
VneI GTGCAC 1 cut(s) 844
VpaK11BI GGWCC 2 cut(s) 85, 1517
VspI ATTAAT 1 cut(s) 674
XapI RAATTY 1 cut(s) 795
XceI RCATGY 1 cut(s) 1167
XspI CTAG 2 cut(s) 363, 756
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.