Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003809

Physical Location & Seq

Genomic Coordinates Forward (+)

11226431 .. 11236100

Gene Structure 9670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G078000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGCTTCTTCAGAGATAGAGGTGGTGTCATCGGACTCCAAAACCCAGAAAAACCCTACCGAGGTGCCGGTGGTCGACGTCTTCTCCGCTTCTGCTTATGGCGATTTTCTGAAACTGAGAAAGTTTGTCGAACAAGACGGTGCCTCTCTCTCCAACCCTGACGTCCATGGCTACTACGCCCTCCATTGGGCTGCTCTTAATAACTTCCCCGATATAGCTCAGTACATAATTGAGCATGGTGGCGATGTCAATGCGACTGAGAATATACAACAGACAGCGTTGCACTGGGCAGCTGTGCAGGGTGCAATTGCGGCGGCGGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCTGCTGATGTAAATGGATACCGGGCAGCTCACGTTGCTGCTCAATATGGGCAAACATCTTTCTTGAATCACATTGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGGAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTTAGGTTACTTCTGTTTAGAGATGCAAGCCAAGGGAGACAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAGAGGAAATGTGGAGGCTTGCACTGTTCTTGTTTATGCCGGTACTAAGCAGGAATTAACGGTGAAAGACAATGCTGGTTTTACTCCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTTGCTAACCAGCAGAGGGCTCACAGTAACCGTTGGAGAGACAAATTTTGCAGTGGGAAGATGGCAGATATTGGTTTCGCTCCTATCTTGTTGTGTACAATAATCTTTCAAACAATTCTCTTTATGAACTCTGTCCTCGCAGCTCCTAATCTGACAAAGGTTACTGCTGCTGTTGGCCTTTGGGGATGGGCTGCTATTTCGTTAGCTGTGGGTTCGCTAATTATGTTCTACAGGTGCAGTAGTAAAGATCCAGGTTACATAAAAAGAGCAGGGGAATTCAGCAGTCATACAGACACAGAGGATCGTTTGTTGAATATTGATTTGAACAACAACTCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCCACTTGCAAGATAATTCGGCCTGTTCGCTCTAAACACTGCCCCACATGTAACCGATGTGTAGAACAGTTTGACCATCATTGTCCATGGATATCTAATTGTGTTGGCAAGAGAAACAAGCGAGATTTTTTTATTTTTATCTGCATGGGAACTTTGACGTCGATAATTTCTGCTGCCGTTACAGTTCAAAGGATTTGGAGTTCAATGCCAGCATGGAGAACAGAAGAAACATGGATTCATCATCTGGTAGTTCAACATCCTAGTGTTGTTGCTTTTCTGTTTTTGGACGTTATTATTTTGGTTGCTGCTACAACTCTGACGGTGGCACAGGCAACTCAGATAGCTCGAAATATCACCACCAATGAATTGGCGAATGCTATTCGTTATGGGTATCTTCGTGGTCCAGATGGGCGGTTCCGGAACCCATATAACCATGGGTGCAGGAAGAATTGTGCTGATTTTCTTATTCAGGGCCACACAGATGATGATGAAATTGCTTGGCCTCCATTGCAGCAAGTTACCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

541

Amino Acids

59.87

Weight (kDa)

7.03

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14255
fragaria_vesca	FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900 FvH4_2g10900
malus_domestica	MD05G1051300.v1.1 MD10G1058600.v1.1
prunus_persica	Prupe.8G078000_v2.0.a1
pyrus_communis	pycom05g04330 pycom10g04530
rosa_chinensis	RchiOBHm_Chr5g0056731 RchiOBHm_Chr6g0269021
rosa_laevigata	RLG00000013888 RLG00000035124
rosa_multiflora	Rmu_co8178534.1_g000001 Rmu_sc0004350.1_g000008 Rmu_sc0029526.1_g000001 Rmu_sc0033095.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089650 Rroxscaffold_7G00199080
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh5AG371900 Rh5AG372000 Rh5BG383800 Rh5DG396800 Rh6AG164900 Rh6BG170100 Rh6CG163600 Rh6DG155400
rosa_wichuraiana	Rw5G034890 Rw6G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	81, 165, 1256
AccB1I	GGYRCC	2 cut(s)	64, 140
AccI	GTMKAC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	1512
AciI	CCGC	5 cut(s)	87, 311, 314, 317, 1507
AclWI	GGATC	2 cut(s)	971, 1038
AcsI	RAATTY	2 cut(s)	773, 1004
AcyI	GRCGYC	3 cut(s)	78, 162, 1253
AfaI	GTAC	4 cut(s)	224, 574, 640, 826
AfiI	CCNNNNNNNGG	4 cut(s)	61, 186, 187, 745
AflIII	ACRYGT	1 cut(s)	1142
AgsI	TTSAA	7 cut(s)	418, 839, 1042, 1054, 1283, 1299, 1349
AjnI	CCWGG	1 cut(s)	979
AloI	GAACNNNNNNTCC	2 cut(s)	1279, 1311
AluBI	AGCT	7 cut(s)	218, 293, 341, 380, 872, 935, 1439
AluI	AGCT	7 cut(s)	218, 293, 341, 380, 872, 935, 1439
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	3 cut(s)	547, 762, 1089
AlwI	GGATC	2 cut(s)	971, 1038
Aor13HI	TCCGGA	1 cut(s)	1512
AoxI	GGCC	4 cut(s)	904, 1115, 1567, 1595
ApoI	RAATTY	2 cut(s)	773, 1004
AspS9I	GGNCC	2 cut(s)	1496, 1567
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	670, 1441
AvaII	GGWCC	1 cut(s)	1496
BanI	GGYRCC	2 cut(s)	64, 140
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	5 cut(s)	784, 909, 1066, 1179, 1496
BceAI	ACGGC	1 cut(s)	1256
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	981
BciVI	GTATCC	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	547, 762, 1089
BfaI	CTAG	2 cut(s)	342, 1356
BfmI	CTRYAG	1 cut(s)	958
BfuI	GTATCC	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	374, 981
Bme18I	GGWCC	1 cut(s)	1496
BmgT120I	GGNCC	2 cut(s)	1496, 1567
BmiI	GGNNCC	4 cut(s)	66, 142, 1511, 1517
BmrFI	CCNGG	2 cut(s)	374, 981
BmrI	ACTGGG	2 cut(s)	295, 595
BmsI	GCATC	3 cut(s)	442, 529, 704
BmuI	ACTGGG	2 cut(s)	295, 595
BpiI	GAAGAC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	3 cut(s)	78, 162, 1253
BsaI	GGTCTC	1 cut(s)	1089
BsaJI	CCNNGG	5 cut(s)	60, 166, 547, 1181, 1528
BsaWI	WCCGGW	1 cut(s)	1512
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 330, 360
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 186, 187, 745
Bse118I	RCCGGY	2 cut(s)	67, 635
Bse1I	ACTGG	3 cut(s)	290, 590, 1617
Bse3DI	GCAATG	1 cut(s)	1601
BseAI	TCCGGA	1 cut(s)	1512
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	5 cut(s)	60, 166, 547, 1181, 1528
BseGI	GGATG	4 cut(s)	325, 920, 1077, 1351
BseLI	CCNNNNNNNGG	4 cut(s)	61, 186, 187, 745
BseMI	GCAATG	1 cut(s)	1601
BseMII	CTCAG	4 cut(s)	107, 233, 249, 1445
BseNI	ACTGG	3 cut(s)	290, 590, 1617
BseRI	GAGGAG	1 cut(s)	487
BsgI	GTGCAG	3 cut(s)	317, 985, 1555
BshFI	GGCC	4 cut(s)	906, 1117, 1569, 1597
BshNI	GGYRCC	2 cut(s)	64, 140
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	4 cut(s)	68, 373, 636, 1513
BslFI	GGGAC	1 cut(s)	1080
BslI	CCNNNNNNNGG	4 cut(s)	61, 186, 187, 745
BsmAI	GTCTC	3 cut(s)	547, 762, 1089
BsmFI	GGGAC	1 cut(s)	1080
BsmI	GAATGC	1 cut(s)	1474
BsnI	GGCC	4 cut(s)	906, 1117, 1569, 1597
Bso31I	GGTCTC	1 cut(s)	1089
Bsp1286I	GDGCHC	2 cut(s)	327, 751
Bsp13I	TCCGGA	1 cut(s)	1512
Bsp1407I	TGTACA	1 cut(s)	824
Bsp143I	GATC	2 cut(s)	976, 1030
Bsp19I	CCATGG	3 cut(s)	166, 1181, 1528
BspACI	CCGC	5 cut(s)	87, 311, 314, 317, 1507
BspANI	GGCC	4 cut(s)	906, 1117, 1569, 1597
BspCNI	CTCAG	4 cut(s)	108, 232, 250, 1444
BspEI	TCCGGA	1 cut(s)	1512
BspLI	GGNNCC	4 cut(s)	66, 142, 1511, 1517
BspPI	GGATC	2 cut(s)	971, 1038
BspT107I	GGYRCC	2 cut(s)	64, 140
BspTNI	GGTCTC	1 cut(s)	1089
BsrDI	GCAATG	1 cut(s)	1601
BsrFI	RCCGGY	2 cut(s)	67, 635
BsrGI	TGTACA	1 cut(s)	824
BsrI	ACTGG	3 cut(s)	290, 590, 1617
BssAI	RCCGGY	2 cut(s)	67, 635
BssECI	CCNNGG	5 cut(s)	60, 166, 547, 1181, 1528
BssMI	GATC	2 cut(s)	976, 1030
BssNI	GRCGYC	3 cut(s)	78, 162, 1253
BssT1I	CCWWGG	4 cut(s)	166, 547, 1181, 1528
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	9 cut(s)	140, 517, 622, 658, 755, 761, 1164, 1279, 1417
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	3 cut(s)	78, 162, 1253
BstAUI	TGTACA	1 cut(s)	824
BstC8I	GCNNGC	3 cut(s)	544, 616, 1305
BstDEI	CTNAG	5 cut(s)	116, 219, 258, 642, 1431
BstDSI	CCRYGG	3 cut(s)	166, 1181, 1528
BstF5I	GGATG	4 cut(s)	325, 920, 1077, 1351
BstKTI	GATC	2 cut(s)	979, 1033
BstMAI	GTCTC	3 cut(s)	547, 762, 1089
BstMBI	GATC	2 cut(s)	976, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 386, 1603
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	1 cut(s)	1146
BstSCI	CCNGG	2 cut(s)	372, 979
BstSFI	CTRYAG	1 cut(s)	958
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	976
BstXI	CCANNNNNNTGG	1 cut(s)	1462
BstYI	RGATCY	1 cut(s)	976
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	4 cut(s)	906, 1117, 1569, 1597
BtgI	CCRYGG	3 cut(s)	166, 1181, 1528
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	325, 920, 1077, 1351
BtsI	GCAGTG	2 cut(s)	787, 1132
BtsIMutI	CAGTG	5 cut(s)	283, 583, 618, 787, 1132
Cac8I	GCNNGC	3 cut(s)	544, 616, 1305
Cfr10I	RCCGGY	2 cut(s)	67, 635
Cfr13I	GGNCC	2 cut(s)	1496, 1567
Csp6I	GTAC	4 cut(s)	223, 573, 639, 825
CviAII	CATG	9 cut(s)	167, 236, 440, 1143, 1182, 1240, 1308, 1326, 1529
CviQI	GTAC	4 cut(s)	223, 573, 639, 825
DdeI	CTNAG	5 cut(s)	116, 219, 258, 642, 1431
DpnI	GATC	2 cut(s)	978, 1032
DpnII	GATC	2 cut(s)	976, 1030
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	332
Eco130I	CCWWGG	4 cut(s)	166, 547, 1181, 1528
Eco24I	GRGCYC	1 cut(s)	751
Eco31I	GGTCTC	1 cut(s)	1089
Eco32I	GATATC	1 cut(s)	1188
Eco47I	GGWCC	1 cut(s)	1496
EcoRI	GAATTC	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	979
EcoRV	GATATC	1 cut(s)	1188
EcoT14I	CCWWGG	4 cut(s)	166, 547, 1181, 1528
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	4 cut(s)	166, 547, 1181, 1528
FaeI	CATG	9 cut(s)	170, 239, 443, 1146, 1185, 1243, 1311, 1329, 1532
FaqI	GGGAC	1 cut(s)	1080
FatI	CATG	9 cut(s)	166, 235, 439, 1142, 1181, 1239, 1307, 1325, 1528
FblI	GTMKAC	1 cut(s)	75
FokI	GGATG	4 cut(s)	332, 927, 1084, 1338
FriOI	GRGCYC	1 cut(s)	751
FspBI	CTAG	2 cut(s)	342, 1356
HaeIII	GGCC	4 cut(s)	906, 1117, 1569, 1597
HapII	CCGG	4 cut(s)	68, 373, 636, 1513
Hin1I	GRCGYC	3 cut(s)	78, 162, 1253
Hin1II	CATG	9 cut(s)	170, 239, 443, 1146, 1185, 1243, 1311, 1329, 1532
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	35, 418, 475, 1330
HpaII	CCGG	4 cut(s)	68, 373, 636, 1513
HphI	GGTGA	2 cut(s)	670, 1441
Hpy166II	GTNNAC	2 cut(s)	76, 825
Hpy188I	TCNGA	8 cut(s)	13, 34, 111, 690, 700, 882, 1413, 1434
Hpy188III	TCNNGA	3 cut(s)	415, 1499, 1513
Hpy8I	GTNNAC	2 cut(s)	76, 825
Hpy99I	CGWCG	2 cut(s)	80, 1258
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	9 cut(s)	140, 517, 622, 658, 755, 761, 1164, 1279, 1417
HpyCH4IV	ACGT	5 cut(s)	78, 162, 384, 1253, 1383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 386, 1603
HpyF3I	CTNAG	5 cut(s)	116, 219, 258, 642, 1431
HpySE526I	ACGT	5 cut(s)	78, 162, 384, 1253, 1383
Hsp92I	GRCGYC	3 cut(s)	78, 162, 1253
Hsp92II	CATG	9 cut(s)	170, 239, 443, 1146, 1185, 1243, 1311, 1329, 1532
Kpn2I	TCCGGA	1 cut(s)	1512
Kzo9I	GATC	2 cut(s)	976, 1030
LmnI	GCTCC	3 cut(s)	338, 814, 877
LweI	GCATC	3 cut(s)	442, 529, 704
MaeI	CTAG	2 cut(s)	342, 1356
MaeII	ACGT	5 cut(s)	78, 162, 384, 1253, 1383
MaeIII	GTNAC	7 cut(s)	522, 755, 889, 983, 1145, 1273, 1612
MalI	GATC	2 cut(s)	978, 1032
MboI	GATC	2 cut(s)	976, 1030
MboII	GAAGA	6 cut(s)	73, 473, 799, 1331, 1481, 1552
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	976
MhlI	GDGCHC	2 cut(s)	327, 751
MlyI	GAGTC	2 cut(s)	29, 484
MmeI	TCCRAC	2 cut(s)	177, 743
MroI	TCCGGA	1 cut(s)	1512
MseI	TTAA	3 cut(s)	198, 596, 653
MslI	CAYNNNNRTG	3 cut(s)	714, 1356, 1575
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	4 cut(s)	68, 373, 636, 1513
MspR9I	CCNGG	2 cut(s)	374, 981
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	1474
MvaI	CCWGG	1 cut(s)	981
MwoI	GCNNNNNNNGC	3 cut(s)	311, 386, 1603
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	3 cut(s)	166, 1181, 1528
NdeII	GATC	2 cut(s)	976, 1030
NlaIII	CATG	9 cut(s)	170, 239, 443, 1146, 1185, 1243, 1311, 1329, 1532
NlaIV	GGNNCC	4 cut(s)	66, 142, 1511, 1517
NspI	RCATGY	1 cut(s)	1146
PciI	ACATGT	1 cut(s)	1142
PctI	GAATGC	1 cut(s)	1474
PfeI	GAWTC	2 cut(s)	418, 1330
PleI	GAGTC	2 cut(s)	29, 483
PpsI	GAGTC	2 cut(s)	29, 483
PscI	ACATGT	1 cut(s)	1142
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	4 cut(s)	66, 142, 1511, 1517
PspPI	GGNCC	2 cut(s)	1496, 1567
PsuI	RGATCY	1 cut(s)	976
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	4 cut(s)	224, 574, 640, 826
RsaNI	GTAC	4 cut(s)	223, 573, 639, 825
RseI	CAYNNNNRTG	3 cut(s)	714, 1356, 1575
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	198, 596, 653
Sau3AI	GATC	2 cut(s)	976, 1030
Sau96I	GGNCC	2 cut(s)	1496, 1567
SchI	GAGTC	2 cut(s)	29, 484
ScrFI	CCNGG	2 cut(s)	374, 981
SduI	GDGCHC	2 cut(s)	327, 751
SfaNI	GCATC	3 cut(s)	442, 529, 704
SfcI	CTRYAG	1 cut(s)	958
SinI	GGWCC	1 cut(s)	1496
SmiMI	CAYNNNNRTG	3 cut(s)	714, 1356, 1575
SsiI	CCGC	5 cut(s)	87, 311, 314, 317, 1507
SspI	AATATT	1 cut(s)	1045
SspMI	CTAG	2 cut(s)	342, 1356
StyD4I	CCNGG	2 cut(s)	372, 979
StyI	CCWWGG	4 cut(s)	166, 547, 1181, 1528
TaaI	ACNGT	9 cut(s)	140, 517, 622, 658, 755, 761, 1164, 1279, 1417
TaiI	ACGT	5 cut(s)	81, 165, 387, 1256, 1386
TaqI	TCGA	4 cut(s)	75, 129, 1256, 1441
TatI	WGTACW	2 cut(s)	222, 824
TauI	GCSGC	2 cut(s)	314, 317
TfiI	GAWTC	2 cut(s)	418, 1330
Tru1I	TTAA	3 cut(s)	198, 596, 653
Tru9I	TTAA	3 cut(s)	198, 596, 653
TscAI	CASTG	5 cut(s)	290, 590, 625, 787, 1139
TspDTI	ATGAA	5 cut(s)	473, 869, 1322, 1473, 1599
TspRI	CASTG	5 cut(s)	290, 590, 625, 787, 1139
VpaK11BI	GGWCC	1 cut(s)	1496
XapI	RAATTY	2 cut(s)	773, 1004
XceI	RCATGY	1 cut(s)	1146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1459
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	2 cut(s)	342, 1356
ZraI	GACGTC	3 cut(s)	79, 163, 1254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.