RLG00000013888

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003809
Physical Location & Seq
Forward (+)
43611976 .. 43623945
11970 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013888

Sequence Viewer

Length: 1653 bp
ATGGTCTCTTCAGAGATAGAGATAGTCTCCTCGTCGTCGTCGTCATCGGACTCAAAACCCCTTGACCAAAACCCTACCGCCGTCGCCGTCGAGGTCCCTATAATCGACGTCTTCTCTGCTTCTGCTTACGGCGATTTTCCCAAACTCAGGAAGTTCGTCGAGGAGGACGGTGCCTCTCTCTCCCAGCCTGATGTCCATGGCTACTACGCACTCCATTGGGCTGCTCTCAATAACTTCCCTGATCTCGCCCACTACATAATTCAGCATGGCGGGGACGTCAATGCCACTGAGAATATAGGGCAGACAGCATTGCATTGGGCAGCCGTGCAGGGTGCAATCGCAGCCGCCGATGTGCTCTTGCAGAATGGAGCTAGGGTTGAGGCTGCTGATGTAAATGGGTACCGGGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTGCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGCAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCAGATACAGTAAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGAGGCAAGATAAAGAAGGTTGTACCCCTTTGCACTGGGCTGCTTTAAAAGGAAATGTGGAGGCTTGCACTGTGCTTGTTCATGCAGGCACAAAGCAGGAATTAATGGTGAAAGACAATGCTGGTTTCACACCTGTTCAGATTGCATCTGATAAAGGTCATCAGCGTGTCGCTCTTTTCCTCTCTAGCCAGCAGCGGGCTCAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTGTTGTGCACAATAATCAGTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGCTCGTAATCTCACAAAGGTTACTGCTGCTGTTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTGTACAGGTGCAGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACAGAGGATCCTCTGTTGAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGCCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGTCCCTGGATATCTAATTGTGTTGGCAAGAGAAACAAGCGAGATTTCTTTATTTTGATCTGCATGGGAACATTGACATCAACCATTTCTGCTGCTGTCACAGTTCAAAGGATTTGGACTGCAGTGCCAGCATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAAGTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTACGACTCTGACAACGGCACAAGCATCTCAGATAGCTCGAAATATCACAACTAATGAACTGGCAAATGCTATTCGTTACGGGTATCTTCGTGGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACTGTGCAAATTTTTTCATTCAGGGCTATACAGACGATGATGAAATTGCCTGGCCTCCATTGCAGCAGGTTGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

551

Amino Acids

60.53

Weight (kDa)

6.59

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 40 - 129 5.6e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 104 - 149 6e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 131 - 196 5e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 194 - 256 1.4e-08 Ankyrin repeats (3 copies)
DHHC PF01529 373 - 500 3.9e-33 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 111, 279
Acc36I ACCTGC 1 cut(s) 1630
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 3 cut(s) 170, 399, 1563
AciI CCGC 5 cut(s) 78, 270, 345, 775, 1537
AclWI GGATC 3 cut(s) 1001, 1055, 1068
AcsI RAATTY 2 cut(s) 804, 1582
AcyI GRCGYC 2 cut(s) 108, 276
AfaI GTAC 3 cut(s) 401, 604, 989
AfiI CCNNNNNNNGG 2 cut(s) 147, 775
AflIII ACRYGT 1 cut(s) 1172
AgsI TTSAA 5 cut(s) 448, 1072, 1084, 1313, 1379
AjnI CCWGG 3 cut(s) 1009, 1211, 1622
AluBI AGCT 4 cut(s) 371, 902, 953, 1469
AluI AGCT 4 cut(s) 371, 902, 953, 1469
Alw21I GWGCWC 2 cut(s) 357, 857
Alw26I GTCTC 3 cut(s) 10, 31, 1119
Alw44I GTGCAC 1 cut(s) 853
AlwI GGATC 3 cut(s) 1001, 1055, 1068
AoxI GGCC 1 cut(s) 1625
ApaLI GTGCAC 1 cut(s) 853
ApoI RAATTY 2 cut(s) 804, 1582
AseI ATTAAT 1 cut(s) 683
Asp718I GGTACC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 94, 1526
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 700
AsuII TTCGAA 1 cut(s) 1543
AvaII GGWCC 2 cut(s) 94, 1526
BaeGI GKGCMC 1 cut(s) 857
BamHI GGATCC 1 cut(s) 1060
BanI GGYRCC 3 cut(s) 170, 399, 1563
BanII GRGCYC 1 cut(s) 781
BarI GAAGNNNNNNTAC 2 cut(s) 540, 572
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 2 cut(s) 357, 857
BccI CCATC 4 cut(s) 939, 1096, 1209, 1526
BceAI ACGGC 6 cut(s) 65, 71, 145, 308, 1464, 1551
BcgI CGANNNNNNTGC 2 cut(s) 954, 988
BciT130I CCWGG 3 cut(s) 1011, 1213, 1624
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 3 cut(s) 10, 31, 1119
BfaI CTAG 2 cut(s) 372, 765
BfmI CTRYAG 1 cut(s) 1326
BfuAI ACCTGC 1 cut(s) 1630
BglI GCCNNNNNGGC 1 cut(s) 1339
Bme1390I CCNGG 4 cut(s) 404, 1011, 1213, 1624
Bme18I GGWCC 2 cut(s) 94, 1526
BmgT120I GGNCC 2 cut(s) 94, 1526
BmiI GGNNCC 5 cut(s) 96, 172, 401, 1062, 1565
BmrFI CCNGG 4 cut(s) 404, 1011, 1213, 1624
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 4 cut(s) 472, 559, 734, 1466
BmuI ACTGGG 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 11, 43
Bpu14I TTCGAA 1 cut(s) 1543
BpuEI CTTGAG 1 cut(s) 765
BpuMI CCSGG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 1180
BsaHI GRCGYC 2 cut(s) 108, 276
BsaI GGTCTC 2 cut(s) 10, 1119
BsaJI CCNNGG 3 cut(s) 196, 577, 1211
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 775
Bse1I ACTGG 4 cut(s) 620, 797, 1497, 1647
Bse3DI GCAATG 2 cut(s) 308, 1631
BseBI CCWGG 3 cut(s) 1011, 1213, 1624
BseCI ATCGAT 1 cut(s) 1180
BseDI CCNNGG 3 cut(s) 196, 577, 1211
BseGI GGATG 2 cut(s) 950, 1107
BseLI CCNNNNNNNGG 2 cut(s) 147, 775
BseMI GCAATG 2 cut(s) 308, 1631
BseMII CTCAG 5 cut(s) 160, 279, 437, 903, 1475
BseNI ACTGG 4 cut(s) 620, 797, 1497, 1647
BseRI GAGGAG 2 cut(s) 19, 176
BseSI GKGCMC 1 cut(s) 857
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 2 cut(s) 347, 1015
BshFI GGCC 1 cut(s) 1627
BshNI GGYRCC 3 cut(s) 170, 399, 1563
BshVI ATCGAT 1 cut(s) 1180
BsiHKAI GWGCWC 2 cut(s) 357, 857
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 4 cut(s) 80, 287, 1046, 1194
BslI CCNNNNNNNGG 2 cut(s) 147, 775
BsmAI GTCTC 3 cut(s) 10, 31, 1119
BsmFI GGGAC 4 cut(s) 80, 287, 1046, 1194
BsnI GGCC 1 cut(s) 1627
Bso31I GGTCTC 2 cut(s) 10, 1119
Bsp119I TTCGAA 1 cut(s) 1543
Bsp1286I GDGCHC 3 cut(s) 357, 781, 857
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 4 cut(s) 241, 1006, 1060, 1263
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 5 cut(s) 78, 270, 345, 775, 1537
BspANI GGCC 1 cut(s) 1627
BspCNI CTCAG 5 cut(s) 159, 280, 436, 902, 1474
BspDI ATCGAT 1 cut(s) 1180
BspLI GGNNCC 5 cut(s) 96, 172, 401, 1062, 1565
BspMAI CTGCAG 1 cut(s) 1330
BspMI ACCTGC 1 cut(s) 1630
BspPI GGATC 3 cut(s) 1001, 1055, 1068
BspT104I TTCGAA 1 cut(s) 1543
BspT107I GGYRCC 3 cut(s) 170, 399, 1563
BspTNI GGTCTC 2 cut(s) 10, 1119
BsrDI GCAATG 2 cut(s) 308, 1631
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 4 cut(s) 620, 797, 1497, 1647
BssECI CCNNGG 3 cut(s) 196, 577, 1211
BssMI GATC 4 cut(s) 241, 1006, 1060, 1263
BssNI GRCGYC 2 cut(s) 108, 276
BssT1I CCWWGG 2 cut(s) 196, 577
Bst2UI CCWGG 3 cut(s) 1011, 1213, 1624
Bst4CI ACNGT 7 cut(s) 170, 547, 652, 874, 1194, 1309, 1577
Bst6I CTCTTC 2 cut(s) 13, 516
BstACI GRCGYC 2 cut(s) 108, 276
BstAUI TGTACA 1 cut(s) 987
BstBI TTCGAA 1 cut(s) 1543
BstC8I GCNNGC 6 cut(s) 574, 646, 667, 770, 777, 1335
BstDEI CTNAG 5 cut(s) 146, 288, 423, 889, 1461
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 2 cut(s) 950, 1107
BstKTI GATC 4 cut(s) 244, 1009, 1063, 1266
BstMAI GTCTC 3 cut(s) 10, 31, 1119
BstMBI GATC 4 cut(s) 241, 1006, 1060, 1263
BstMWI GCNNNNNNNGC 4 cut(s) 341, 1334, 1339, 1633
BstNI CCWGG 3 cut(s) 1011, 1213, 1624
BstNSI RCATGY 1 cut(s) 1176
BstSCI CCNGG 4 cut(s) 402, 1009, 1211, 1622
BstSFI CTRYAG 1 cut(s) 1326
BstSLI GKGCMC 1 cut(s) 857
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 2 cut(s) 1006, 1060
BstYI RGATCY 2 cut(s) 1006, 1060
Bsu15I ATCGAT 1 cut(s) 1180
BsuRI GGCC 1 cut(s) 1627
BsuTUI ATCGAT 1 cut(s) 1180
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 950, 1107
BtsI GCAGTG 3 cut(s) 972, 1162, 1335
BtsIMutI CAGTG 7 cut(s) 285, 613, 648, 790, 972, 1162, 1335
BveI ACCTGC 1 cut(s) 1630
Cac8I GCNNGC 6 cut(s) 574, 646, 667, 770, 777, 1335
Cfr13I GGNCC 2 cut(s) 94, 1526
ClaI ATCGAT 1 cut(s) 1180
Csp6I GTAC 3 cut(s) 400, 603, 988
CviAII CATG 9 cut(s) 197, 266, 470, 662, 1173, 1270, 1338, 1367, 1559
CviQI GTAC 3 cut(s) 400, 603, 988
DdeI CTNAG 5 cut(s) 146, 288, 423, 889, 1461
DpnI GATC 4 cut(s) 243, 1008, 1062, 1265
DpnII GATC 4 cut(s) 241, 1006, 1060, 1263
DraI TTTAAA 1 cut(s) 627
Eam1104I CTCTTC 2 cut(s) 13, 516
EarI CTCTTC 2 cut(s) 13, 516
Eco130I CCWWGG 2 cut(s) 196, 577
Eco24I GRGCYC 1 cut(s) 781
Eco31I GGTCTC 2 cut(s) 10, 1119
Eco32I GATATC 1 cut(s) 1218
Eco47I GGWCC 2 cut(s) 94, 1526
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 3 cut(s) 1009, 1211, 1622
EcoRV GATATC 1 cut(s) 1218
EcoT14I CCWWGG 2 cut(s) 196, 577
EcoT38I GRGCYC 1 cut(s) 781
ErhI CCWWGG 2 cut(s) 196, 577
FaeI CATG 9 cut(s) 200, 269, 473, 665, 1176, 1273, 1341, 1370, 1562
FaqI GGGAC 4 cut(s) 80, 287, 1046, 1194
FatI CATG 9 cut(s) 196, 265, 469, 661, 1172, 1269, 1337, 1366, 1558
FauI CCCGC 2 cut(s) 263, 768
FokI GGATG 2 cut(s) 957, 1114
FriOI GRGCYC 1 cut(s) 781
FspBI CTAG 2 cut(s) 372, 765
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 1627
HapII CCGG 1 cut(s) 403
Hin1I GRCGYC 2 cut(s) 108, 276
Hin1II CATG 9 cut(s) 200, 269, 473, 665, 1176, 1273, 1341, 1370, 1562
HinfI GANTC 4 cut(s) 50, 505, 1360, 1438
HpaII CCGG 1 cut(s) 403
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 2 cut(s) 412, 855
Hpy188I TCNGA 7 cut(s) 13, 49, 720, 730, 1145, 1443, 1464
Hpy188III TCNNGA 3 cut(s) 148, 445, 1529
Hpy8I GTNNAC 2 cut(s) 412, 855
Hpy99I CGWCG 7 cut(s) 37, 40, 43, 86, 92, 110, 161
HpyAV CCTTC 1 cut(s) 590
HpyCH4III ACNGT 7 cut(s) 170, 547, 652, 874, 1194, 1309, 1577
HpyCH4IV ACGT 3 cut(s) 108, 276, 414
HpyF10VI GCNNNNNNNGC 4 cut(s) 341, 1334, 1339, 1633
HpyF3I CTNAG 5 cut(s) 146, 288, 423, 889, 1461
HpySE526I ACGT 3 cut(s) 108, 276, 414
Hsp92I GRCGYC 2 cut(s) 108, 276
Hsp92II CATG 9 cut(s) 200, 269, 473, 665, 1176, 1273, 1341, 1370, 1562
KpnI GGTACC 1 cut(s) 403
Kzo9I GATC 4 cut(s) 241, 1006, 1060, 1263
LmnI GCTCC 3 cut(s) 368, 844, 1160
LweI GCATC 4 cut(s) 472, 559, 734, 1466
MaeI CTAG 2 cut(s) 372, 765
MaeII ACGT 3 cut(s) 108, 276, 414
MaeIII GTNAC 3 cut(s) 919, 1303, 1508
MalI GATC 4 cut(s) 243, 1008, 1062, 1265
MboI GATC 4 cut(s) 241, 1006, 1060, 1263
MboII GAAGA 6 cut(s) 103, 503, 829, 1016, 1361, 1511
MflI RGATCY 2 cut(s) 1006, 1060
MhlI GDGCHC 3 cut(s) 357, 781, 857
MluCI AATT 8 cut(s) 258, 680, 804, 1087, 1108, 1222, 1582, 1617
MlyI GAGTC 3 cut(s) 44, 514, 1432
MseI TTAA 4 cut(s) 626, 683, 797, 1651
MslI CAYNNNNRTG 3 cut(s) 744, 1096, 1402
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 4 cut(s) 404, 1011, 1213, 1624
MvaI CCWGG 3 cut(s) 1011, 1213, 1624
MwoI GCNNNNNNNGC 4 cut(s) 341, 1334, 1339, 1633
NciI CCSGG 1 cut(s) 404
NcoI CCATGG 1 cut(s) 196
NdeII GATC 4 cut(s) 241, 1006, 1060, 1263
NlaIII CATG 9 cut(s) 200, 269, 473, 665, 1176, 1273, 1341, 1370, 1562
NlaIV GGNNCC 5 cut(s) 96, 172, 401, 1062, 1565
NmuCI GTSAC 1 cut(s) 1303
NspI RCATGY 1 cut(s) 1176
NspV TTCGAA 1 cut(s) 1543
PciI ACATGT 1 cut(s) 1172
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 345
PfeI GAWTC 1 cut(s) 1360
PleI GAGTC 3 cut(s) 44, 513, 1432
PpsI GAGTC 3 cut(s) 44, 513, 1432
PpuMI RGGWCCY 1 cut(s) 94
PscI ACATGT 1 cut(s) 1172
PshBI ATTAAT 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 1009, 1211, 1622
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 1009, 1211, 1622
PspN4I GGNNCC 5 cut(s) 96, 172, 401, 1062, 1565
PspPI GGNCC 2 cut(s) 94, 1526
PspPPI RGGWCCY 1 cut(s) 94
PstI CTGCAG 1 cut(s) 1330
PsuI RGATCY 2 cut(s) 1006, 1060
RsaI GTAC 3 cut(s) 401, 604, 989
RsaNI GTAC 3 cut(s) 400, 603, 988
RseI CAYNNNNRTG 3 cut(s) 744, 1096, 1402
SaqAI TTAA 4 cut(s) 626, 683, 797, 1651
Sau3AI GATC 4 cut(s) 241, 1006, 1060, 1263
Sau96I GGNCC 2 cut(s) 94, 1526
SchI GAGTC 3 cut(s) 44, 514, 1432
ScrFI CCNGG 4 cut(s) 404, 1011, 1213, 1624
SduI GDGCHC 3 cut(s) 357, 781, 857
SfaNI GCATC 4 cut(s) 472, 559, 734, 1466
SfcI CTRYAG 1 cut(s) 1326
SfuI TTCGAA 1 cut(s) 1543
SinI GGWCC 2 cut(s) 94, 1526
SmiMI CAYNNNNRTG 3 cut(s) 744, 1096, 1402
SmlI CTYRAG 1 cut(s) 780
SmoI CTYRAG 1 cut(s) 780
Sse9I AATT 8 cut(s) 258, 680, 804, 1087, 1108, 1222, 1582, 1617
SsiI CCGC 5 cut(s) 78, 270, 345, 775, 1537
SspI AATATT 1 cut(s) 1075
SspMI CTAG 2 cut(s) 372, 765
StyD4I CCNGG 4 cut(s) 402, 1009, 1211, 1622
StyI CCWWGG 2 cut(s) 196, 577
TaaI ACNGT 7 cut(s) 170, 547, 652, 874, 1194, 1309, 1577
TaiI ACGT 3 cut(s) 111, 279, 417
TaqI TCGA 6 cut(s) 90, 105, 159, 1180, 1471, 1543
TasI AATT 8 cut(s) 258, 680, 804, 1087, 1108, 1222, 1582, 1617
TatI WGTACW 1 cut(s) 987
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 1360
Tru1I TTAA 4 cut(s) 626, 683, 797, 1651
Tru9I TTAA 4 cut(s) 626, 683, 797, 1651
TscAI CASTG 7 cut(s) 292, 620, 655, 797, 972, 1169, 1335
TseFI GTSAC 1 cut(s) 1303
Tsp45I GTSAC 1 cut(s) 1303
TspDTI ATGAA 9 cut(s) 503, 650, 899, 948, 1080, 1352, 1503, 1579, 1629
TspRI CASTG 7 cut(s) 292, 620, 655, 797, 972, 1169, 1335
VneI GTGCAC 1 cut(s) 853
VpaK11BI GGWCC 2 cut(s) 94, 1526
VspI ATTAAT 1 cut(s) 683
XapI RAATTY 2 cut(s) 804, 1582
XceI RCATGY 1 cut(s) 1176
XspI CTAG 2 cut(s) 372, 765
ZraI GACGTC 2 cut(s) 109, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.