Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Forward (+)

11779774 .. 11780515

Gene Structure 742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGCAGCTGAGCGAGGAGGCTGCAATGTCCATGTCTAAGGAAATCAATCTGATAAACAGAGAGGAAGTATCAGTTGCGGTTGACATGCAGCTGAAAATAATTTTCACTAGCTTTGATAAGGTTCCTTTGTTTGTGTGGCTTCCCAGGGGTGACAGCTTGCCAATTCCTCCGATAAGACTTCAAGAGATTTATGAGTCACTCATGCCGTCTGCAAGAACAACAATTGAAGTAGAAAAGATTAAGCTGGTGGTTTGGGATAAGAATCTGCAGCGGTTGCTTGTTGATGAATCAGGCTATGAAGATGGAATAGCTGATCTAGATTTTGTTACTTCTTTTCCGGACGAACTAGCGCAAGGGCTGTTGGCACATGGAACAGCTACTGCAGCAGCAGATAATTCTTTGAGCAAGCAGCAGATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.78

Weight (kDa)

4.4

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	2 cut(s)	80, 274
AgsI	TTSAA	2 cut(s)	185, 230
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	7 cut(s)	10, 94, 114, 159, 247, 314, 380
AluI	AGCT	7 cut(s)	10, 94, 114, 159, 247, 314, 380
AlwNI	CAGNNNCTG	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	340
ApeKI	GCWGC	7 cut(s)	7, 23, 91, 271, 386, 389, 412
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	164
BbvI	GCAGC	6 cut(s)	10, 19, 103, 283, 398, 401
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	148
BfaI	CTAG	3 cut(s)	111, 320, 350
BfmI	CTRYAG	2 cut(s)	269, 384
BisI	GCNGC	7 cut(s)	8, 24, 92, 272, 387, 390, 413
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	7 cut(s)	9, 25, 93, 273, 388, 391, 414
Bme1390I	CCNGG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	148
Bpu1102I	GCTNAGC	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	146, 147
BsaWI	WCCGGW	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 147
BseJI	GATNNNNATC	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	6 cut(s)	10, 19, 103, 283, 398, 401
BsiSI	CCGG	1 cut(s)	341
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	80, 274
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	2 cut(s)	273, 388
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	146, 147
BssMI	GATC	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	161, 410
BstDEI	CTNAG	2 cut(s)	11, 39
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 386
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	269, 384
BstV1I	GCAGC	6 cut(s)	10, 19, 103, 283, 398, 401
Cac8I	GCNNGC	2 cut(s)	161, 410
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	1 cut(s)	355
CviAII	CATG	4 cut(s)	34, 88, 205, 371
DdeI	CTNAG	2 cut(s)	11, 39
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	4 cut(s)	37, 91, 208, 374
FaiI	YATR	6 cut(s)	35, 89, 195, 206, 300, 372
FatI	CATG	4 cut(s)	33, 87, 204, 370
Fnu4HI	GCNGC	7 cut(s)	8, 24, 92, 272, 387, 390, 413
Fsp4HI	GCNGC	7 cut(s)	8, 24, 92, 272, 387, 390, 413
FspBI	CTAG	3 cut(s)	111, 320, 350
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	7 cut(s)	8, 24, 92, 272, 387, 390, 413
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	37, 91, 208, 374
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	197, 265, 290, 418
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	54, 174
Hpy188III	TCNNGA	3 cut(s)	185, 320, 341
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4V	TGCA	5 cut(s)	26, 91, 215, 271, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 386
HpyF3I	CTNAG	2 cut(s)	11, 39
Hsp92II	CATG	4 cut(s)	37, 91, 208, 374
HspAI	GCGC	1 cut(s)	353
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	133, 160, 233, 279, 354
Lsp1109I	GCAGC	6 cut(s)	10, 19, 103, 283, 398, 401
MaeI	CTAG	3 cut(s)	111, 320, 350
MaeIII	GTNAC	3 cut(s)	152, 198, 328
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	1 cut(s)	314
MfeI	CAATTG	1 cut(s)	225
MluCI	AATT	4 cut(s)	102, 165, 225, 397
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	10, 13, 58, 180
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	3 cut(s)	10, 94, 274
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	277, 386
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	4 cut(s)	37, 91, 208, 374
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	2 cut(s)	152, 198
NspI	RCATGY	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	265, 290, 418
PkrI	GCNGC	7 cut(s)	9, 25, 93, 273, 388, 391, 414
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	126
PstI	CTGCAG	2 cut(s)	273, 388
PstNI	CAGNNNCTG	1 cut(s)	383
PvuII	CAGCTG	2 cut(s)	10, 94
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	7 cut(s)	8, 24, 92, 272, 387, 390, 413
Sau3AI	GATC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	8 cut(s)	12, 96, 116, 126, 161, 249, 316, 382
SfcI	CTRYAG	2 cut(s)	269, 384
Sse9I	AATT	4 cut(s)	102, 165, 225, 397
SsiI	CCGC	2 cut(s)	80, 274
SspMI	CTAG	3 cut(s)	111, 320, 350
StyD4I	CCNGG	1 cut(s)	146
TasI	AATT	4 cut(s)	102, 165, 225, 397
TfiI	GAWTC	3 cut(s)	265, 290, 418
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	152, 198
TseI	GCWGC	7 cut(s)	7, 23, 91, 271, 386, 389, 412
Tsp45I	GTSAC	2 cut(s)	152, 198
TspDTI	ATGAA	2 cut(s)	303, 315
XbaI	TCTAGA	1 cut(s)	319
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	3 cut(s)	111, 320, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.