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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g13480 |
| pyrus_communis | pycom08g06270 |
| rosa_chinensis | RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661 |
| rosa_laevigata | RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704 |
| rosa_multiflora | Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820 |
| rosa_rugosa | Rorug01G0465700 Rorug01G0465700 Rorug02G0241200 |
| rosa_samantha | Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200 |
| rosa_wichuraiana | Rw2G001310 Rw2G001330 Rw2G023820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1728, 1964 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 429 |
| Acc36I | ACCTGC | 4 cut(s) | 943, 1249, 1692, 2368 |
| AccI | GTMKAC | 2 cut(s) | 1123, 1547 |
| AccIII | TCCGGA | 2 cut(s) | 108, 2686 |
| AciI | CCGC | 1 cut(s) | 2585 |
| AclWI | GGATC | 5 cut(s) | 758, 1655, 1751, 1868, 2897 |
| AcsI | RAATTY | 8 cut(s) | 119, 1152, 1388, 1810, 1827, 1905, 2909, 3055 |
| AcuI | CTGAAG | 8 cut(s) | 680, 789, 1197, 1529, 2163, 2175, 2400, 2456 |
| AcvI | CACGTG | 1 cut(s) | 845 |
| AcyI | GRCGYC | 2 cut(s) | 2002, 2243 |
| AfaI | GTAC | 7 cut(s) | 747, 753, 1342, 1496, 1838, 2088, 2806 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1005, 1054, 1582, 2032, 2057, 2060, 2602 |
| AflIII | ACRYGT | 2 cut(s) | 748, 844 |
| AhlI | ACTAGT | 1 cut(s) | 803 |
| AjiI | CACGTC | 1 cut(s) | 840 |
| AjnI | CCWGG | 5 cut(s) | 365, 1763, 2056, 2610, 2840 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 365, 397 |
| Alw21I | GWGCWC | 2 cut(s) | 325, 2163 |
| Alw26I | GTCTC | 7 cut(s) | 415, 1200, 1571, 2324, 2707, 2758, 3140 |
| AlwI | GGATC | 5 cut(s) | 758, 1655, 1751, 1868, 2897 |
| Aor13HI | TCCGGA | 2 cut(s) | 108, 2686 |
| AoxI | GGCC | 2 cut(s) | 397, 2463 |
| ApeKI | GCWGC | 7 cut(s) | 193, 1357, 2280, 2723, 2972, 2975, 3095 |
| ApoI | RAATTY | 8 cut(s) | 119, 1152, 1388, 1810, 1827, 1905, 2909, 3055 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 152, 184 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1746, 1773, 1830, 2444 |
| AspS9I | GGNCC | 7 cut(s) | 111, 397, 1396, 1483, 2464, 2608, 2684 |
| AsuHPI | GGTGA | 2 cut(s) | 890, 988 |
| AvaII | GGWCC | 5 cut(s) | 111, 1396, 1483, 2608, 2684 |
| BanII | GRGCYC | 1 cut(s) | 2163 |
| BauI | CACGAG | 1 cut(s) | 1113 |
| BbrPI | CACGTG | 1 cut(s) | 845 |
| BbsI | GAAGAC | 2 cut(s) | 1718, 2527 |
| Bbv12I | GWGCWC | 2 cut(s) | 325, 2163 |
| BbvCI | CCTCAGC | 1 cut(s) | 2076 |
| BbvI | GCAGC | 7 cut(s) | 205, 1344, 2267, 2710, 2984, 2987, 3082 |
| BciT130I | CCWGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| BciVI | GTATCC | 2 cut(s) | 1175, 2034 |
| BclI | TGATCA | 2 cut(s) | 1537, 2394 |
| BcoDI | GTCTC | 7 cut(s) | 415, 1200, 1571, 2324, 2707, 2758, 3140 |
| BcuI | ACTAGT | 1 cut(s) | 803 |
| BfaI | CTAG | 9 cut(s) | 597, 804, 1296, 1400, 1517, 1622, 2417, 2517, 2834 |
| BfmI | CTRYAG | 1 cut(s) | 2884 |
| BfuAI | ACCTGC | 4 cut(s) | 943, 1249, 1692, 2368 |
| BfuI | GTATCC | 2 cut(s) | 1175, 2034 |
| BisI | GCNGC | 7 cut(s) | 194, 1358, 2281, 2724, 2973, 2976, 3096 |
| BlpI | GCTNAGC | 1 cut(s) | 87 |
| BlsI | GCNGC | 7 cut(s) | 195, 1359, 2282, 2725, 2974, 2977, 3097 |
| Bme1390I | CCNGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| Bme18I | GGWCC | 5 cut(s) | 111, 1396, 1483, 2608, 2684 |
| BmgBI | CACGTC | 1 cut(s) | 840 |
| BmgT120I | GGNCC | 7 cut(s) | 111, 397, 1396, 1483, 2464, 2608, 2684 |
| BmiI | GGNNCC | 5 cut(s) | 113, 273, 585, 1397, 2466 |
| BmrFI | CCNGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| BmrI | ACTGGG | 1 cut(s) | 321 |
| BmsI | GCATC | 5 cut(s) | 1174, 1357, 1480, 2614, 2781 |
| BmuI | ACTGGG | 1 cut(s) | 321 |
| BpiI | GAAGAC | 2 cut(s) | 1718, 2527 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2267, 2299 |
| BpmI | CTGGAG | 2 cut(s) | 339, 2040 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2076, 2450 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 87 |
| BpuEI | CTTGAG | 8 cut(s) | 141, 772, 1178, 1230, 1347, 1355, 2780, 2925 |
| BsaAI | YACGTR | 1 cut(s) | 845 |
| BsaHI | GRCGYC | 2 cut(s) | 2002, 2243 |
| BsaI | GGTCTC | 2 cut(s) | 1571, 2758 |
| BsaJI | CCNNGG | 6 cut(s) | 366, 1053, 1561, 1665, 1764, 2545 |
| BsaWI | WCCGGW | 2 cut(s) | 108, 2686 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1005, 1054, 1582, 2032, 2057, 2060, 2602 |
| Bse1I | ACTGG | 4 cut(s) | 316, 322, 2003, 2315 |
| Bse3DI | GCAATG | 5 cut(s) | 508, 631, 1616, 2087, 3180 |
| BseAI | TCCGGA | 2 cut(s) | 108, 2686 |
| BseBI | CCWGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| BseDI | CCNNGG | 6 cut(s) | 366, 1053, 1561, 1665, 1764, 2545 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1005, 1054, 1582, 2032, 2057, 2060, 2602 |
| BseMI | GCAATG | 5 cut(s) | 508, 631, 1616, 2087, 3180 |
| BseMII | CTCAG | 7 cut(s) | 657, 1254, 1572, 2090, 2441, 2892, 2972 |
| BseNI | ACTGG | 4 cut(s) | 316, 322, 2003, 2315 |
| BseRI | GAGGAG | 5 cut(s) | 902, 929, 1474, 2043, 2153 |
| BseXI | GCAGC | 7 cut(s) | 205, 1344, 2267, 2710, 2984, 2987, 3082 |
| BsgI | GTGCAG | 2 cut(s) | 986, 2975 |
| BshFI | GGCC | 2 cut(s) | 399, 2465 |
| BsiHKAI | GWGCWC | 2 cut(s) | 325, 2163 |
| BsiSI | CCGG | 2 cut(s) | 109, 2687 |
| BslFI | GGGAC | 5 cut(s) | 328, 823, 1409, 1798, 2527 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1005, 1054, 1582, 2032, 2057, 2060, 2602 |
| BsmAI | GTCTC | 7 cut(s) | 415, 1200, 1571, 2324, 2707, 2758, 3140 |
| BsmFI | GGGAC | 5 cut(s) | 328, 823, 1409, 1798, 2527 |
| BsmI | GAATGC | 2 cut(s) | 1111, 3098 |
| BsnI | GGCC | 2 cut(s) | 399, 2465 |
| Bso31I | GGTCTC | 2 cut(s) | 1571, 2758 |
| Bsp1286I | GDGCHC | 2 cut(s) | 325, 2163 |
| Bsp13I | TCCGGA | 2 cut(s) | 108, 2686 |
| Bsp1407I | TGTACA | 1 cut(s) | 2804 |
| Bsp143I | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 87 |
| BspACI | CCGC | 1 cut(s) | 2585 |
| BspANI | GGCC | 2 cut(s) | 399, 2465 |
| BspCNI | CTCAG | 7 cut(s) | 658, 1255, 1573, 2089, 2442, 2891, 2973 |
| BspEI | TCCGGA | 2 cut(s) | 108, 2686 |
| BspLI | GGNNCC | 5 cut(s) | 113, 273, 585, 1397, 2466 |
| BspMI | ACCTGC | 4 cut(s) | 943, 1249, 1692, 2368 |
| BspPI | GGATC | 5 cut(s) | 758, 1655, 1751, 1868, 2897 |
| BspQI | GCTCTTC | 1 cut(s) | 2151 |
| BspTNI | GGTCTC | 2 cut(s) | 1571, 2758 |
| BsrDI | GCAATG | 5 cut(s) | 508, 631, 1616, 2087, 3180 |
| BsrGI | TGTACA | 1 cut(s) | 2804 |
| BsrI | ACTGG | 4 cut(s) | 316, 322, 2003, 2315 |
| BssECI | CCNNGG | 6 cut(s) | 366, 1053, 1561, 1665, 1764, 2545 |
| BssMI | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| BssNAI | GTATAC | 2 cut(s) | 1124, 1548 |
| BssNI | GRCGYC | 2 cut(s) | 2002, 2243 |
| BssSI | CACGAG | 1 cut(s) | 1113 |
| BssT1I | CCWWGG | 3 cut(s) | 1561, 1665, 2545 |
| Bst1107I | GTATAC | 2 cut(s) | 1124, 1548 |
| Bst2BI | CACGAG | 1 cut(s) | 1113 |
| Bst2UI | CCWGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| Bst4CI | ACNGT | 3 cut(s) | 1128, 2812, 2949 |
| Bst6I | CTCTTC | 3 cut(s) | 1899, 2151, 2322 |
| BstACI | GRCGYC | 2 cut(s) | 2002, 2243 |
| BstAUI | TGTACA | 1 cut(s) | 2804 |
| BstBAI | YACGTR | 1 cut(s) | 845 |
| BstC8I | GCNNGC | 5 cut(s) | 1045, 1049, 1920, 2728, 2958 |
| BstDSI | CCRYGG | 1 cut(s) | 1053 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2055 |
| BstKTI | GATC | 8 cut(s) | 538, 766, 1540, 1663, 1759, 1876, 2397, 2905 |
| BstMAI | GTCTC | 7 cut(s) | 415, 1200, 1571, 2324, 2707, 2758, 3140 |
| BstMBI | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| BstNI | CCWGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| BstNSI | RCATGY | 2 cut(s) | 752, 2730 |
| BstSCI | CCNGG | 5 cut(s) | 365, 1763, 2056, 2610, 2840 |
| BstSFI | CTRYAG | 1 cut(s) | 2884 |
| BstV1I | GCAGC | 7 cut(s) | 205, 1344, 2267, 2710, 2984, 2987, 3082 |
| BstV2I | GAAGAC | 2 cut(s) | 1718, 2527 |
| BstX2I | RGATCY | 1 cut(s) | 1873 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 337, 1060, 2064 |
| BstYI | RGATCY | 1 cut(s) | 1873 |
| BstZ17I | GTATAC | 2 cut(s) | 1124, 1548 |
| BsuI | GTATCC | 2 cut(s) | 1175, 2034 |
| BsuRI | GGCC | 2 cut(s) | 399, 2465 |
| BtgI | CCRYGG | 1 cut(s) | 1053 |
| BtrI | CACGTC | 1 cut(s) | 840 |
| BtsIMutI | CAGTG | 5 cut(s) | 1221, 1578, 1996, 2754, 2978 |
| BveI | ACCTGC | 4 cut(s) | 943, 1249, 1692, 2368 |
| Cac8I | GCNNGC | 5 cut(s) | 1045, 1049, 1920, 2728, 2958 |
| Cfr13I | GGNCC | 7 cut(s) | 111, 397, 1396, 1483, 2464, 2608, 2684 |
| CseI | GACGC | 5 cut(s) | 695, 1546, 1991, 2232, 3185 |
| Csp6I | GTAC | 7 cut(s) | 746, 752, 1341, 1495, 1837, 2087, 2805 |
| CviAII | CATG | 7 cut(s) | 682, 749, 2093, 2102, 2238, 2727, 3183 |
| CviQI | GTAC | 7 cut(s) | 746, 752, 1341, 1495, 1837, 2087, 2805 |
| DpnI | GATC | 8 cut(s) | 537, 765, 1539, 1662, 1758, 1875, 2396, 2904 |
| DpnII | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| DraI | TTTAAA | 1 cut(s) | 460 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 429 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 429 |
| Eam1104I | CTCTTC | 3 cut(s) | 1899, 2151, 2322 |
| EarI | CTCTTC | 3 cut(s) | 1899, 2151, 2322 |
| Ecl136II | GAGCTC | 1 cut(s) | 2161 |
| Eco130I | CCWWGG | 3 cut(s) | 1561, 1665, 2545 |
| Eco24I | GRGCYC | 1 cut(s) | 2163 |
| Eco31I | GGTCTC | 2 cut(s) | 1571, 2758 |
| Eco47I | GGWCC | 5 cut(s) | 111, 1396, 1483, 2608, 2684 |
| Eco53kI | GAGCTC | 1 cut(s) | 2161 |
| Eco57I | CTGAAG | 8 cut(s) | 680, 789, 1197, 1529, 2163, 2175, 2400, 2456 |
| Eco72I | CACGTG | 1 cut(s) | 845 |
| EcoICRI | GAGCTC | 1 cut(s) | 2161 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2055 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1396, 2464, 2608 |
| EcoRI | GAATTC | 2 cut(s) | 1152, 1905 |
| EcoRII | CCWGG | 5 cut(s) | 365, 1763, 2056, 2610, 2840 |
| EcoT14I | CCWWGG | 3 cut(s) | 1561, 1665, 2545 |
| EcoT38I | GRGCYC | 1 cut(s) | 2163 |
| ErhI | CCWWGG | 3 cut(s) | 1561, 1665, 2545 |
| FaeI | CATG | 7 cut(s) | 685, 752, 2096, 2105, 2241, 2730, 3186 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 890, 922 |
| FaqI | GGGAC | 5 cut(s) | 328, 823, 1409, 1798, 2527 |
| FatI | CATG | 7 cut(s) | 681, 748, 2092, 2101, 2237, 2726, 3182 |
| FbaI | TGATCA | 2 cut(s) | 1537, 2394 |
| FblI | GTMKAC | 2 cut(s) | 1123, 1547 |
| Fnu4HI | GCNGC | 7 cut(s) | 194, 1358, 2281, 2724, 2973, 2976, 3096 |
| FriOI | GRGCYC | 1 cut(s) | 2163 |
| Fsp4HI | GCNGC | 7 cut(s) | 194, 1358, 2281, 2724, 2973, 2976, 3096 |
| FspBI | CTAG | 9 cut(s) | 597, 804, 1296, 1400, 1517, 1622, 2417, 2517, 2834 |
| GluI | GCNGC | 7 cut(s) | 194, 1358, 2281, 2724, 2973, 2976, 3096 |
| GsuI | CTGGAG | 2 cut(s) | 339, 2040 |
| HaeIII | GGCC | 2 cut(s) | 399, 2465 |
| HapII | CCGG | 2 cut(s) | 109, 2687 |
| HgaI | GACGC | 5 cut(s) | 695, 1546, 1991, 2232, 3185 |
| Hin1I | GRCGYC | 2 cut(s) | 2002, 2243 |
| Hin1II | CATG | 7 cut(s) | 685, 752, 2096, 2105, 2241, 2730, 3186 |
| HincII | GTYRAC | 2 cut(s) | 2349, 2373 |
| HindII | GTYRAC | 2 cut(s) | 2349, 2373 |
| HindIII | AAGCTT | 3 cut(s) | 69, 89, 1248 |
| HpaII | CCGG | 2 cut(s) | 109, 2687 |
| HphI | GGTGA | 2 cut(s) | 890, 988 |
| Hpy166II | GTNNAC | 7 cut(s) | 482, 1124, 1343, 1548, 2087, 2349, 2373 |
| Hpy8I | GTNNAC | 7 cut(s) | 482, 1124, 1343, 1548, 2087, 2349, 2373 |
| HpyCH4III | ACNGT | 3 cut(s) | 1128, 2812, 2949 |
| HpyCH4IV | ACGT | 2 cut(s) | 839, 844 |
| HpySE526I | ACGT | 2 cut(s) | 839, 844 |
| Hsp92I | GRCGYC | 2 cut(s) | 2002, 2243 |
| Hsp92II | CATG | 7 cut(s) | 685, 752, 2096, 2105, 2241, 2730, 3186 |
| Kpn2I | TCCGGA | 2 cut(s) | 108, 2686 |
| Ksp22I | TGATCA | 2 cut(s) | 1537, 2394 |
| Kzo9I | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| LguI | GCTCTTC | 1 cut(s) | 2151 |
| LmnI | GCTCC | 5 cut(s) | 271, 320, 583, 2166, 2288 |
| Lsp1109I | GCAGC | 7 cut(s) | 205, 1344, 2267, 2710, 2984, 2987, 3082 |
| LweI | GCATC | 5 cut(s) | 1174, 1357, 1480, 2614, 2781 |
| MaeI | CTAG | 9 cut(s) | 597, 804, 1296, 1400, 1517, 1622, 2417, 2517, 2834 |
| MaeII | ACGT | 2 cut(s) | 839, 844 |
| MaeIII | GTNAC | 9 cut(s) | 175, 696, 825, 840, 1063, 1673, 2263, 2836, 2914 |
| MalI | GATC | 8 cut(s) | 537, 765, 1539, 1662, 1758, 1875, 2396, 2904 |
| MboI | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| MfeI | CAATTG | 2 cut(s) | 692, 701 |
| MflI | RGATCY | 1 cut(s) | 1873 |
| MhlI | GDGCHC | 2 cut(s) | 325, 2163 |
| MmeI | TCCRAC | 2 cut(s) | 337, 1499 |
| MroI | TCCGGA | 2 cut(s) | 108, 2686 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1746, 1773, 1830, 2444 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1058, 2575, 3173 |
| MspA1I | CMGCKG | 1 cut(s) | 2378 |
| MspI | CCGG | 2 cut(s) | 109, 2687 |
| MspR9I | CCNGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| MunI | CAATTG | 2 cut(s) | 692, 701 |
| Mva1269I | GAATGC | 2 cut(s) | 1111, 3098 |
| MvaI | CCWGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| NdeII | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| NlaIII | CATG | 7 cut(s) | 685, 752, 2096, 2105, 2241, 2730, 3186 |
| NlaIV | GGNNCC | 5 cut(s) | 113, 273, 585, 1397, 2466 |
| NmuCI | GTSAC | 5 cut(s) | 696, 840, 1063, 1673, 2263 |
| NspI | RCATGY | 2 cut(s) | 752, 2730 |
| PaeI | GCATGC | 1 cut(s) | 2730 |
| PciI | ACATGT | 1 cut(s) | 748 |
| PciSI | GCTCTTC | 1 cut(s) | 2151 |
| PctI | GAATGC | 2 cut(s) | 1111, 3098 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1746, 1773, 1830, 2444 |
| PfeI | GAWTC | 6 cut(s) | 380, 519, 715, 1843, 2314, 3155 |
| PkrI | GCNGC | 7 cut(s) | 195, 1359, 2282, 2725, 2974, 2977, 3097 |
| PmaCI | CACGTG | 1 cut(s) | 845 |
| PmlI | CACGTG | 1 cut(s) | 845 |
| Ppu21I | YACGTR | 1 cut(s) | 845 |
| PpuMI | RGGWCCY | 2 cut(s) | 1396, 2608 |
| PscI | ACATGT | 1 cut(s) | 748 |
| PsiI | TTATAA | 2 cut(s) | 1728, 1964 |
| Psp124BI | GAGCTC | 1 cut(s) | 2163 |
| Psp5II | RGGWCCY | 2 cut(s) | 1396, 2608 |
| Psp6I | CCWGG | 5 cut(s) | 365, 1763, 2056, 2610, 2840 |
| PspCI | CACGTG | 1 cut(s) | 845 |
| PspGI | CCWGG | 5 cut(s) | 365, 1763, 2056, 2610, 2840 |
| PspN4I | GGNNCC | 5 cut(s) | 113, 273, 585, 1397, 2466 |
| PspPI | GGNCC | 7 cut(s) | 111, 397, 1396, 1483, 2464, 2608, 2684 |
| PspPPI | RGGWCCY | 2 cut(s) | 1396, 2608 |
| PsuI | RGATCY | 1 cut(s) | 1873 |
| PvuII | CAGCTG | 1 cut(s) | 2378 |
| RsaI | GTAC | 7 cut(s) | 747, 753, 1342, 1496, 1838, 2088, 2806 |
| RsaNI | GTAC | 7 cut(s) | 746, 752, 1341, 1495, 1837, 2087, 2805 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1058, 2575, 3173 |
| SacI | GAGCTC | 1 cut(s) | 2163 |
| SapI | GCTCTTC | 1 cut(s) | 2151 |
| SatI | GCNGC | 7 cut(s) | 194, 1358, 2281, 2724, 2973, 2976, 3096 |
| Sau3AI | GATC | 8 cut(s) | 535, 763, 1537, 1660, 1756, 1873, 2394, 2902 |
| Sau96I | GGNCC | 7 cut(s) | 111, 397, 1396, 1483, 2464, 2608, 2684 |
| ScrFI | CCNGG | 5 cut(s) | 367, 1765, 2058, 2612, 2842 |
| SduI | GDGCHC | 2 cut(s) | 325, 2163 |
| SfaNI | GCATC | 5 cut(s) | 1174, 1357, 1480, 2614, 2781 |
| SfcI | CTRYAG | 1 cut(s) | 2884 |
| SinI | GGWCC | 5 cut(s) | 111, 1396, 1483, 2608, 2684 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1058, 2575, 3173 |
| SmlI | CTYRAG | 8 cut(s) | 156, 787, 1157, 1245, 1334, 1362, 2759, 2940 |
| SmoI | CTYRAG | 8 cut(s) | 156, 787, 1157, 1245, 1334, 1362, 2759, 2940 |
| SpeI | ACTAGT | 1 cut(s) | 803 |
| SphI | GCATGC | 1 cut(s) | 2730 |
| SsiI | CCGC | 1 cut(s) | 2585 |
| SspI | AATATT | 1 cut(s) | 1235 |
| SspMI | CTAG | 9 cut(s) | 597, 804, 1296, 1400, 1517, 1622, 2417, 2517, 2834 |
| SstI | GAGCTC | 1 cut(s) | 2163 |
| StyD4I | CCNGG | 5 cut(s) | 365, 1763, 2056, 2610, 2840 |
| StyI | CCWWGG | 3 cut(s) | 1561, 1665, 2545 |
| TaaI | ACNGT | 3 cut(s) | 1128, 2812, 2949 |
| TaiI | ACGT | 2 cut(s) | 842, 847 |
| TaqI | TCGA | 3 cut(s) | 1375, 2785, 3012 |
| TaqII | GACCGA | 1 cut(s) | 311 |
| TatI | WGTACW | 5 cut(s) | 745, 1494, 1836, 2086, 2804 |
| TfiI | GAWTC | 6 cut(s) | 380, 519, 715, 1843, 2314, 3155 |
| TscAI | CASTG | 5 cut(s) | 1221, 1585, 2003, 2754, 2985 |
| TseFI | GTSAC | 5 cut(s) | 696, 840, 1063, 1673, 2263 |
| TseI | GCWGC | 7 cut(s) | 193, 1357, 2280, 2723, 2972, 2975, 3095 |
| Tsp45I | GTSAC | 5 cut(s) | 696, 840, 1063, 1673, 2263 |
| TspGWI | ACGGA | 2 cut(s) | 1070, 1833 |
| TspRI | CASTG | 5 cut(s) | 1221, 1585, 2003, 2754, 2985 |
| VpaK11BI | GGWCC | 5 cut(s) | 111, 1396, 1483, 2608, 2684 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2055 |
| XapI | RAATTY | 8 cut(s) | 119, 1152, 1388, 1810, 1827, 1905, 2909, 3055 |
| XbaI | TCTAGA | 1 cut(s) | 1516 |
| XceI | RCATGY | 2 cut(s) | 752, 2730 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 391, 575, 1006, 2475, 2599 |
| XmiI | GTMKAC | 2 cut(s) | 1123, 1547 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1746, 1773, 1830, 2444 |
| XspI | CTAG | 9 cut(s) | 597, 804, 1296, 1400, 1517, 1622, 2417, 2517, 2834 |